Wall clock time and date at job start Tue Mar 31 2020 14:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38676 * 120.78859 * 2 1 4 4 C 1.38187 * 119.16132 * 179.97438 * 3 2 1 5 5 N 1.31882 * 120.76400 * 359.97438 * 4 3 2 6 6 C 1.31848 * 121.72974 * 0.02716 * 5 4 3 7 7 C 1.50707 * 119.62144 * 179.97438 * 6 5 4 8 8 O 1.45198 * 109.47466 * 179.97438 * 7 6 5 9 9 C 1.34224 * 117.00245 * 180.02562 * 8 7 6 10 10 O 1.20824 * 120.00022 * 0.02562 * 9 8 7 11 11 C 1.50696 * 119.99975 * 180.27819 * 9 8 7 12 12 C 1.52998 * 109.47062 * 179.72416 * 11 9 8 13 13 H 1.09005 * 109.46926 * 304.99682 * 12 11 9 14 14 C 1.50702 * 109.47382 * 64.99878 * 12 11 9 15 15 H 1.08000 * 119.99483 * 29.59727 * 14 12 11 16 16 C 1.37875 * 120.00170 * 209.59650 * 14 12 11 17 17 N 1.31515 * 120.00022 * 4.94237 * 16 14 12 18 18 Si 1.86798 * 120.00014 * 184.95223 * 16 14 12 19 19 H 1.48500 * 109.47437 * 59.99227 * 18 16 14 20 20 H 1.48491 * 109.47206 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46902 * 299.99970 * 18 16 14 22 22 C 1.50704 * 109.47497 * 185.00222 * 12 11 9 23 23 C 1.38240 * 119.99348 * 296.77769 * 22 12 11 24 24 C 1.38242 * 119.99501 * 179.80752 * 23 22 12 25 25 C 1.38238 * 119.99840 * 0.39530 * 24 23 22 26 26 C 1.38233 * 120.00125 * 359.85581 * 25 24 23 27 27 C 1.38227 * 120.00363 * 117.04262 * 22 12 11 28 28 C 1.38225 * 120.76621 * 0.26603 * 6 5 4 29 29 H 1.09002 * 109.46828 * 90.00433 * 1 2 3 30 30 H 1.09004 * 109.47245 * 210.00203 * 1 2 3 31 31 H 1.08994 * 109.47541 * 330.00311 * 1 2 3 32 32 H 1.07999 * 120.41902 * 0.02562 * 3 2 1 33 33 H 1.07993 * 119.61606 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.46907 * 59.99744 * 7 6 5 35 35 H 1.08994 * 109.46947 * 300.00257 * 7 6 5 36 36 H 1.09000 * 109.47133 * 299.72341 * 11 9 8 37 37 H 1.09005 * 109.47243 * 59.72833 * 11 9 8 38 38 H 0.97005 * 119.99831 * 179.97438 * 17 16 14 39 39 H 1.07991 * 120.00535 * 359.97438 * 23 22 12 40 40 H 1.07994 * 119.99599 * 180.22829 * 24 23 22 41 41 H 1.07996 * 119.99400 * 179.83413 * 25 24 23 42 42 H 1.08000 * 119.99581 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.00003 * 359.97438 * 27 22 12 44 44 H 1.07997 * 120.42865 * 179.70642 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2402 0.0001 0.0016 6 6 3.5983 -1.1515 0.0016 7 6 4.3800 -2.4400 0.0022 8 8 3.4608 -3.5639 0.0027 9 6 4.0007 -4.7928 0.0038 10 8 5.2016 -4.9250 0.0048 11 6 3.1089 -6.0076 -0.0020 12 6 3.9699 -7.2723 -0.0063 13 1 4.6624 -7.2375 -0.8474 14 6 4.7478 -7.3549 1.2818 15 1 4.3432 -6.9236 2.1855 16 6 5.9759 -7.9810 1.3065 17 7 6.5128 -8.4202 0.1891 18 14 6.8772 -8.2059 2.9271 19 1 6.0424 -9.0167 3.8496 20 1 8.1657 -8.9029 2.6844 21 1 7.1397 -6.8771 3.5360 22 6 3.0828 -8.4836 -0.1359 23 6 2.1637 -8.7763 0.8543 24 6 1.3471 -9.8852 0.7336 25 6 1.4554 -10.7060 -0.3735 26 6 2.3781 -10.4162 -1.3612 27 6 3.1919 -9.3051 -1.2423 28 6 2.2167 -1.1909 -0.0050 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5137 32 1 1.6966 2.1378 0.0004 33 1 4.1582 2.0754 0.0010 34 1 5.0075 -2.4839 0.8924 35 1 5.0081 -2.4843 -0.8875 36 1 2.4789 -6.0000 0.8875 37 1 2.4805 -5.9928 -0.8926 38 1 7.3770 -8.8604 0.2065 39 1 2.0817 -8.1371 1.7210 40 1 0.6266 -10.1118 1.5054 41 1 0.8193 -11.5737 -0.4665 42 1 2.4629 -11.0577 -2.2259 43 1 3.9126 -9.0786 -2.0141 44 1 1.6965 -2.1374 -0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795982886.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:18 Heat of formation + Delta-G solvation = -35.131110 kcal Electronic energy + Delta-G solvation = -26256.588660 eV Core-core repulsion = 22524.542357 eV Total energy + Delta-G solvation = -3732.046303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.51144 -39.63424 -38.37676 -36.07355 -34.19377 -34.05979 -32.11344 -31.51187 -30.04596 -29.12711 -28.04374 -27.15302 -25.58766 -23.42034 -22.79983 -21.68497 -21.20076 -20.56321 -19.28202 -17.16314 -16.77667 -16.59666 -16.22312 -15.99212 -15.77214 -15.66219 -14.98797 -14.49246 -14.44945 -14.16459 -13.91076 -13.51878 -13.42481 -12.89168 -12.86816 -12.73542 -12.54984 -12.46277 -12.14234 -11.92956 -11.75113 -11.67140 -11.52201 -10.89200 -10.81578 -10.63554 -10.35716 -10.30966 -10.11385 -9.63347 -9.61497 -9.56679 -9.45385 -9.12133 -9.03266 -8.40641 -8.07876 -7.68189 -5.99229 -4.00374 0.97034 1.12346 2.25379 2.28981 3.00227 3.11450 3.36308 3.40013 3.42586 3.61955 4.30955 4.46936 4.48966 4.54684 4.70502 4.93452 5.06216 5.17083 5.28896 5.33128 5.35291 5.48109 5.51044 5.61290 5.64021 5.69514 5.73419 5.77952 5.80860 5.98548 6.03882 6.07840 6.16434 6.23968 6.37432 6.46496 6.57337 6.66490 6.85543 6.95849 7.10194 7.27914 7.38157 7.47054 7.80662 7.84909 7.89257 7.98716 8.28725 8.63719 8.99138 9.62019 11.10469 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012293 B = 0.003186 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.136562 B = 8787.339189 C =10338.934495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.044 4.044 3 C -0.182 4.182 4 C 0.105 3.895 5 N -0.486 5.486 6 C 0.134 3.866 7 C 0.118 3.882 8 O -0.374 6.374 9 C 0.457 3.543 10 O -0.460 6.460 11 C -0.092 4.092 12 C 0.075 3.925 13 H 0.075 0.925 14 C -0.502 4.502 15 H 0.052 0.948 16 C 0.079 3.921 17 N -0.879 5.879 18 Si 0.886 3.114 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.024 4.024 23 C -0.113 4.113 24 C -0.132 4.132 25 C -0.153 4.153 26 C -0.128 4.128 27 C -0.118 4.118 28 C -0.151 4.151 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.133 0.867 33 H 0.157 0.843 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.261 0.739 39 H 0.115 0.885 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.115 0.885 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.718 12.864 -2.234 18.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.052 4.052 3 C -0.202 4.202 4 C -0.052 4.052 5 N -0.197 5.197 6 C -0.003 4.003 7 C 0.043 3.957 8 O -0.293 6.293 9 C 0.298 3.702 10 O -0.341 6.341 11 C -0.130 4.130 12 C 0.056 3.944 13 H 0.093 0.907 14 C -0.539 4.539 15 H 0.071 0.929 16 C -0.125 4.125 17 N -0.515 5.515 18 Si 0.714 3.286 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.024 4.024 23 C -0.131 4.131 24 C -0.150 4.150 25 C -0.171 4.171 26 C -0.147 4.147 27 C -0.136 4.136 28 C -0.171 4.171 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.151 0.849 33 H 0.174 0.826 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.133 0.867 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.133 0.867 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.221 12.723 -2.309 17.120 hybrid contribution -0.075 -0.172 1.008 1.025 sum -11.296 12.551 -1.302 16.935 Atomic orbital electron populations 1.20830 0.90139 1.03393 1.02928 1.20399 0.96916 0.92923 0.95003 1.22024 0.95659 0.98634 1.03863 1.22648 0.91759 0.95581 0.95247 1.67211 1.41511 0.97850 1.13112 1.20830 0.91433 0.92789 0.95222 1.21199 0.89923 0.80360 1.04177 1.86417 1.41350 1.15597 1.85916 1.24010 0.89732 0.83009 0.73475 1.90753 1.16003 1.85647 1.41721 1.21596 0.97698 0.90806 1.02882 1.17916 0.91076 0.84209 1.01176 0.90683 1.20674 1.02508 1.37206 0.93519 0.92949 1.24816 0.96799 0.95037 0.95844 1.69885 1.17362 1.38498 1.25762 0.86754 0.79110 0.78280 0.84453 1.20299 1.21305 1.20272 1.20632 0.92207 0.98210 0.91400 1.20969 0.96060 0.97314 0.98792 1.20987 1.00136 0.96148 0.97732 1.20817 1.00514 1.00057 0.95749 1.20988 0.97118 0.97800 0.98744 1.21091 0.98669 0.95320 0.98494 1.21930 0.94751 0.99368 1.01008 0.90474 0.90712 0.91146 0.84925 0.82582 0.89099 0.89208 0.89266 0.90299 0.92923 0.86733 0.87571 0.87739 0.87560 0.86719 0.83471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.06 36.00 0.36 -0.45 16 2 C -0.04 -0.45 5.92 -104.32 -0.62 -1.07 16 3 C -0.18 -1.68 9.82 -39.44 -0.39 -2.07 16 4 C 0.10 1.12 11.18 -17.55 -0.20 0.92 16 5 N -0.49 -6.76 10.27 -9.47 -0.10 -6.86 16 6 C 0.13 1.91 6.78 -82.59 -0.56 1.35 16 7 C 0.12 1.87 6.01 36.01 0.22 2.08 16 8 O -0.37 -6.29 8.66 -39.24 -0.34 -6.63 16 9 C 0.46 9.16 7.71 36.00 0.28 9.44 16 10 O -0.46 -11.12 14.73 -18.75 -0.28 -11.39 16 11 C -0.09 -1.75 5.06 -27.89 -0.14 -1.89 16 12 C 0.07 1.73 1.69 -92.92 -0.16 1.58 16 13 H 0.08 1.99 6.95 -51.93 -0.36 1.62 16 14 C -0.50 -13.13 6.38 -34.44 -0.22 -13.35 16 15 H 0.05 1.36 7.82 -52.49 -0.41 0.95 16 16 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 17 N -0.88 -25.29 12.85 55.43 0.71 -24.58 16 18 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 C -0.02 -0.51 4.77 -104.62 -0.50 -1.01 16 23 C -0.11 -2.22 8.86 -39.58 -0.35 -2.57 16 24 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 25 C -0.15 -2.59 10.05 -39.58 -0.40 -2.99 16 26 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 27 C -0.12 -2.41 9.67 -39.59 -0.38 -2.79 16 28 C -0.15 -1.87 9.13 -39.44 -0.36 -2.23 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 32 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 33 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 35 H 0.09 1.43 8.13 -51.93 -0.42 1.00 16 36 H 0.09 1.55 7.76 -51.93 -0.40 1.15 16 37 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.11 2.15 7.75 -52.49 -0.41 1.74 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 41 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.11 2.37 7.95 -52.49 -0.42 1.95 16 44 H 0.15 1.77 6.98 -52.49 -0.37 1.40 16 LS Contribution 378.56 15.07 5.70 5.70 Total: -1.00 -31.60 378.56 -9.77 -41.37 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.15 Total: 3.99 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -4.31 Total: -18.37 kcal Atomic # 7 Polarization: -32.05 SS G_CDS: 0.61 Total: -31.44 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.62 Total: -18.03 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.60 -9.77 -41.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795982886.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.235 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds