Wall clock time and date at job start Tue Mar 31 2020 14:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38676 * 120.78859 * 2 1 4 4 C 1.38187 * 119.16132 * 179.97438 * 3 2 1 5 5 N 1.31882 * 120.76400 * 359.97438 * 4 3 2 6 6 C 1.31848 * 121.72974 * 0.02716 * 5 4 3 7 7 C 1.50707 * 119.62144 * 179.97438 * 6 5 4 8 8 O 1.45198 * 109.47466 * 179.97438 * 7 6 5 9 9 C 1.34224 * 117.00245 * 180.02562 * 8 7 6 10 10 O 1.20824 * 120.00022 * 0.02562 * 9 8 7 11 11 C 1.50696 * 119.99975 * 180.27819 * 9 8 7 12 12 C 1.52998 * 109.47062 * 179.72416 * 11 9 8 13 13 H 1.09005 * 109.46926 * 304.99682 * 12 11 9 14 14 C 1.50702 * 109.47382 * 64.99878 * 12 11 9 15 15 H 1.08000 * 119.99483 * 29.59727 * 14 12 11 16 16 C 1.37875 * 120.00170 * 209.59650 * 14 12 11 17 17 N 1.31515 * 120.00022 * 4.94237 * 16 14 12 18 18 Si 1.86798 * 120.00014 * 184.95223 * 16 14 12 19 19 H 1.48500 * 109.47437 * 59.99227 * 18 16 14 20 20 H 1.48491 * 109.47206 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46902 * 299.99970 * 18 16 14 22 22 C 1.50704 * 109.47497 * 185.00222 * 12 11 9 23 23 C 1.38240 * 119.99348 * 296.77769 * 22 12 11 24 24 C 1.38242 * 119.99501 * 179.80752 * 23 22 12 25 25 C 1.38238 * 119.99840 * 0.39530 * 24 23 22 26 26 C 1.38233 * 120.00125 * 359.85581 * 25 24 23 27 27 C 1.38227 * 120.00363 * 117.04262 * 22 12 11 28 28 C 1.38225 * 120.76621 * 0.26603 * 6 5 4 29 29 H 1.09002 * 109.46828 * 90.00433 * 1 2 3 30 30 H 1.09004 * 109.47245 * 210.00203 * 1 2 3 31 31 H 1.08994 * 109.47541 * 330.00311 * 1 2 3 32 32 H 1.07999 * 120.41902 * 0.02562 * 3 2 1 33 33 H 1.07993 * 119.61606 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.46907 * 59.99744 * 7 6 5 35 35 H 1.08994 * 109.46947 * 300.00257 * 7 6 5 36 36 H 1.09000 * 109.47133 * 299.72341 * 11 9 8 37 37 H 1.09005 * 109.47243 * 59.72833 * 11 9 8 38 38 H 0.97005 * 119.99831 * 179.97438 * 17 16 14 39 39 H 1.07991 * 120.00535 * 359.97438 * 23 22 12 40 40 H 1.07994 * 119.99599 * 180.22829 * 24 23 22 41 41 H 1.07996 * 119.99400 * 179.83413 * 25 24 23 42 42 H 1.08000 * 119.99581 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.00003 * 359.97438 * 27 22 12 44 44 H 1.07997 * 120.42865 * 179.70642 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2402 0.0001 0.0016 6 6 3.5983 -1.1515 0.0016 7 6 4.3800 -2.4400 0.0022 8 8 3.4608 -3.5639 0.0027 9 6 4.0007 -4.7928 0.0038 10 8 5.2016 -4.9250 0.0048 11 6 3.1089 -6.0076 -0.0020 12 6 3.9699 -7.2723 -0.0063 13 1 4.6624 -7.2375 -0.8474 14 6 4.7478 -7.3549 1.2818 15 1 4.3432 -6.9236 2.1855 16 6 5.9759 -7.9810 1.3065 17 7 6.5128 -8.4202 0.1891 18 14 6.8772 -8.2059 2.9271 19 1 6.0424 -9.0167 3.8496 20 1 8.1657 -8.9029 2.6844 21 1 7.1397 -6.8771 3.5360 22 6 3.0828 -8.4836 -0.1359 23 6 2.1637 -8.7763 0.8543 24 6 1.3471 -9.8852 0.7336 25 6 1.4554 -10.7060 -0.3735 26 6 2.3781 -10.4162 -1.3612 27 6 3.1919 -9.3051 -1.2423 28 6 2.2167 -1.1909 -0.0050 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5137 32 1 1.6966 2.1378 0.0004 33 1 4.1582 2.0754 0.0010 34 1 5.0075 -2.4839 0.8924 35 1 5.0081 -2.4843 -0.8875 36 1 2.4789 -6.0000 0.8875 37 1 2.4805 -5.9928 -0.8926 38 1 7.3770 -8.8604 0.2065 39 1 2.0817 -8.1371 1.7210 40 1 0.6266 -10.1118 1.5054 41 1 0.8193 -11.5737 -0.4665 42 1 2.4629 -11.0577 -2.2259 43 1 3.9126 -9.0786 -2.0141 44 1 1.6965 -2.1374 -0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795982886.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:17 Heat of formation + Delta-G solvation = -50.674026 kcal Electronic energy + Delta-G solvation = -26257.262651 eV Core-core repulsion = 22524.542357 eV Total energy + Delta-G solvation = -3732.720294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.64768 -41.00201 -39.86610 -37.62617 -35.83830 -35.00456 -33.53305 -33.04273 -31.49596 -30.60044 -28.80134 -28.38651 -27.35905 -24.82906 -24.00470 -23.14602 -22.16113 -22.02878 -20.93295 -18.69306 -18.50865 -17.84993 -17.49651 -17.30009 -17.11081 -16.77571 -16.43908 -15.99333 -15.68002 -15.56573 -15.39436 -14.68662 -14.60211 -14.29272 -14.03254 -13.78074 -13.70437 -13.65289 -13.43890 -13.36654 -13.27944 -13.12360 -12.82288 -12.59099 -12.52961 -12.33039 -11.85590 -11.85093 -11.72312 -11.39388 -11.24185 -10.96980 -10.49830 -10.48050 -10.42899 -9.96305 -9.53281 -9.21809 -8.06743 -6.10939 0.07829 0.28491 0.78810 0.82433 1.37344 1.39442 1.44228 1.47405 1.60044 2.44451 2.72807 3.17308 3.22807 3.34557 3.68300 3.84915 4.00273 4.10540 4.16362 4.21563 4.24494 4.36115 4.37241 4.42065 4.47232 4.52719 4.56685 4.70573 4.71685 4.82100 4.85581 4.92155 4.96110 5.01676 5.13647 5.23580 5.36520 5.37469 5.48546 5.57424 5.62477 5.76004 5.77028 5.84833 5.94895 6.14395 6.37744 6.45981 6.94277 6.96247 7.03376 7.52534 9.02264 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012293 B = 0.003186 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.136562 B = 8787.339189 C =10338.934495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.045 4.045 3 C -0.169 4.169 4 C 0.096 3.904 5 N -0.518 5.518 6 C 0.109 3.891 7 C 0.121 3.879 8 O -0.356 6.356 9 C 0.462 3.538 10 O -0.510 6.510 11 C -0.087 4.087 12 C 0.078 3.922 13 H 0.030 0.970 14 C -0.496 4.496 15 H 0.050 0.950 16 C 0.026 3.974 17 N -0.914 5.914 18 Si 0.934 3.066 19 H -0.266 1.266 20 H -0.289 1.289 21 H -0.281 1.281 22 C -0.047 4.047 23 C -0.125 4.125 24 C -0.127 4.127 25 C -0.146 4.146 26 C -0.129 4.129 27 C -0.141 4.141 28 C -0.163 4.163 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.172 0.828 33 H 0.186 0.814 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.255 0.745 39 H 0.118 0.882 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.132 0.868 43 H 0.096 0.904 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.372 13.589 -1.439 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.053 4.053 3 C -0.188 4.188 4 C -0.061 4.061 5 N -0.229 5.229 6 C -0.027 4.027 7 C 0.046 3.954 8 O -0.274 6.274 9 C 0.305 3.695 10 O -0.396 6.396 11 C -0.124 4.124 12 C 0.059 3.941 13 H 0.049 0.951 14 C -0.534 4.534 15 H 0.068 0.932 16 C -0.174 4.174 17 N -0.553 5.553 18 Si 0.761 3.239 19 H -0.191 1.191 20 H -0.215 1.215 21 H -0.207 1.207 22 C -0.047 4.047 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.163 4.163 26 C -0.147 4.147 27 C -0.160 4.160 28 C -0.183 4.183 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.190 0.810 33 H 0.203 0.797 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.064 0.936 39 H 0.136 0.864 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.150 0.850 43 H 0.114 0.886 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.915 13.459 -1.502 20.146 hybrid contribution 0.923 -0.273 0.714 1.199 sum -13.992 13.186 -0.788 19.243 Atomic orbital electron populations 1.20909 0.87627 1.04535 1.03988 1.20813 0.98689 0.92248 0.93549 1.22461 0.95109 0.99943 1.01324 1.23250 0.93061 0.95397 0.94380 1.67136 1.42790 0.98639 1.14376 1.20548 0.92079 0.92045 0.98045 1.21182 0.90067 0.81082 1.03085 1.86395 1.40942 1.14973 1.85099 1.24266 0.89113 0.84108 0.72008 1.90741 1.18086 1.86466 1.44271 1.21531 0.97168 0.88508 1.05217 1.17702 0.91283 0.87171 0.97954 0.95121 1.20997 1.02529 1.35373 0.94525 0.93175 1.25483 0.98015 0.95745 0.98143 1.70030 1.17540 1.40428 1.27287 0.85992 0.78261 0.77952 0.81737 1.19052 1.21460 1.20658 1.20428 0.93539 0.97778 0.92986 1.21078 0.96326 0.98616 0.98331 1.21381 0.99661 0.94815 0.98604 1.21281 0.99806 1.00661 0.94583 1.21286 0.96438 0.96888 1.00076 1.21112 0.99603 0.96863 0.98405 1.21997 0.94014 1.00583 1.01738 0.89284 0.90636 0.89004 0.81031 0.79680 0.90593 0.90233 0.87099 0.87442 0.93588 0.86360 0.84103 0.83886 0.85032 0.88616 0.83674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.06 71.23 0.72 -0.51 16 2 C -0.04 -0.81 5.92 -19.67 -0.12 -0.92 16 3 C -0.17 -2.60 9.82 22.36 0.22 -2.38 16 4 C 0.10 1.88 11.18 84.67 0.95 2.83 16 5 N -0.52 -14.50 10.27 -183.89 -1.89 -16.39 16 6 C 0.11 3.18 6.78 42.56 0.29 3.47 16 7 C 0.12 4.08 6.01 71.24 0.43 4.51 16 8 O -0.36 -12.47 8.66 -51.36 -0.44 -12.91 16 9 C 0.46 19.35 7.71 71.23 0.55 19.90 16 10 O -0.51 -26.32 14.73 21.97 0.32 -26.00 16 11 C -0.09 -3.35 5.06 29.85 0.15 -3.20 16 12 C 0.08 3.74 1.69 -12.28 -0.02 3.72 16 13 H 0.03 1.73 6.95 -2.38 -0.02 1.72 16 14 C -0.50 -26.81 6.38 25.60 0.16 -26.65 16 15 H 0.05 2.66 7.82 -2.91 -0.02 2.63 16 16 C 0.03 1.46 5.45 84.65 0.46 1.92 16 17 N -0.91 -55.35 12.85 21.45 0.28 -55.07 16 18 Si 0.93 45.90 29.54 68.60 2.03 47.93 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 21 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 22 C -0.05 -2.03 4.77 -19.87 -0.09 -2.12 16 23 C -0.13 -4.74 8.86 22.27 0.20 -4.54 16 24 C -0.13 -3.98 10.05 22.27 0.22 -3.76 16 25 C -0.15 -4.37 10.05 22.27 0.22 -4.15 16 26 C -0.13 -4.39 10.05 22.27 0.22 -4.17 16 27 C -0.14 -5.90 9.67 22.27 0.22 -5.69 16 28 C -0.16 -3.99 9.13 22.36 0.20 -3.78 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.82 8.10 -2.38 -0.02 0.81 16 31 H 0.09 0.62 8.10 -2.39 -0.02 0.61 16 32 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 33 H 0.19 2.33 8.06 -2.91 -0.02 2.30 16 34 H 0.08 2.73 8.13 -2.39 -0.02 2.71 16 35 H 0.08 2.78 8.13 -2.39 -0.02 2.76 16 36 H 0.11 3.80 7.76 -2.39 -0.02 3.78 16 37 H 0.11 3.51 8.14 -2.38 -0.02 3.49 16 38 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 39 H 0.12 4.27 7.75 -2.92 -0.02 4.25 16 40 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 41 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 42 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 43 H 0.10 4.23 7.95 -2.91 -0.02 4.20 16 44 H 0.15 3.45 6.98 -2.91 -0.02 3.43 16 Total: -1.00 -73.15 378.56 6.26 -66.89 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.99 Total: 21.06 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: 4.98 Total: -25.51 kcal Atomic # 7 Polarization: -69.85 SS G_CDS: -1.61 Total: -71.46 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -0.12 Total: -38.91 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -73.15 6.26 -66.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795982886.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.215 kcal (2) G-P(sol) polarization free energy of solvation -73.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds