Wall clock time and date at job start Tue Mar 31 2020 13:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38663 * 120.42204 * 2 1 4 4 C 1.38623 * 118.42386 * 180.24770 * 3 2 1 5 5 C 1.38228 * 119.16034 * 359.74901 * 4 3 2 6 6 N 1.31858 * 120.76071 * 0.02562 * 5 4 3 7 7 C 1.31881 * 121.72515 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.61428 * 179.97438 * 7 6 5 9 9 O 1.45202 * 109.47142 * 89.99898 * 8 7 6 10 10 C 1.34222 * 116.99801 * 180.02562 * 9 8 7 11 11 O 1.20827 * 120.00324 * 359.97438 * 10 9 8 12 12 C 1.50700 * 120.00130 * 180.02562 * 10 9 8 13 13 C 1.52998 * 109.47544 * 179.97438 * 12 10 9 14 14 H 1.09007 * 109.46887 * 53.81672 * 13 12 10 15 15 C 1.50697 * 109.47155 * 293.81685 * 13 12 10 16 16 H 1.07996 * 120.00349 * 324.78882 * 15 13 12 17 17 C 1.37879 * 120.00134 * 144.79100 * 15 13 12 18 18 N 1.31507 * 120.00464 * 181.06646 * 17 15 13 19 19 Si 1.86804 * 119.99609 * 1.34165 * 17 15 13 20 20 H 1.48500 * 109.47160 * 266.74005 * 19 17 15 21 21 H 1.48497 * 109.47511 * 26.74638 * 19 17 15 22 22 H 1.48505 * 109.46900 * 146.74735 * 19 17 15 23 23 C 1.50701 * 109.46972 * 173.81275 * 13 12 10 24 24 C 1.38231 * 119.99796 * 66.67709 * 23 13 12 25 25 C 1.38235 * 119.99741 * 179.78611 * 24 23 13 26 26 C 1.38240 * 120.00191 * 0.43460 * 25 24 23 27 27 C 1.38236 * 119.99460 * 359.81350 * 26 25 24 28 28 C 1.38230 * 120.00169 * 359.97438 * 27 26 25 29 29 H 1.09008 * 109.47095 * 270.25000 * 1 2 3 30 30 H 1.09000 * 109.47197 * 30.24626 * 1 2 3 31 31 H 1.08998 * 109.47732 * 150.25077 * 1 2 3 32 32 H 1.08008 * 120.78943 * 359.97413 * 3 2 1 33 33 H 1.08004 * 120.42284 * 179.73517 * 4 3 2 34 34 H 1.08001 * 119.61592 * 180.02562 * 5 4 3 35 35 H 1.09002 * 109.46866 * 329.99819 * 8 7 6 36 36 H 1.08996 * 109.47154 * 210.00162 * 8 7 6 37 37 H 1.08999 * 109.47252 * 59.99615 * 12 10 9 38 38 H 1.08998 * 109.46896 * 299.99890 * 12 10 9 39 39 H 0.97000 * 120.00777 * 180.27070 * 18 17 15 40 40 H 1.08001 * 120.00369 * 359.97438 * 24 23 13 41 41 H 1.08006 * 119.99904 * 180.27111 * 25 24 23 42 42 H 1.07998 * 120.00179 * 179.83524 * 26 25 24 43 43 H 1.08005 * 119.99238 * 179.97438 * 27 26 25 44 44 H 1.08004 * 119.99637 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1957 0.0000 4 6 3.5945 1.1474 -0.0053 5 6 4.2256 -0.0824 -0.0050 6 7 3.5253 -1.1997 -0.0004 7 6 2.2066 -1.1916 0.0047 8 6 1.4538 -2.4972 0.0093 9 8 1.2174 -2.9148 1.3798 10 6 0.5539 -4.0676 1.5596 11 8 0.1825 -4.7065 0.6037 12 6 0.2711 -4.5646 2.9539 13 6 -0.4923 -5.8884 2.8785 14 1 0.0588 -6.5904 2.2527 15 6 -1.8560 -5.6487 2.2837 16 1 -2.3846 -4.7315 2.4971 17 6 -2.4289 -6.6005 1.4671 18 7 -3.6098 -6.3825 0.9311 19 14 -1.5310 -8.2032 1.1282 20 1 -0.7353 -8.0707 -0.1186 21 1 -0.6248 -8.5125 2.2632 22 1 -2.5191 -9.3004 0.9704 23 6 -0.6422 -6.4614 4.2643 24 6 -1.4263 -5.8123 5.1994 25 6 -1.5674 -6.3402 6.4692 26 6 -0.9171 -7.5126 6.8065 27 6 -0.1288 -8.1589 5.8728 28 6 0.0087 -7.6332 4.6018 29 1 -0.3634 0.0045 1.0277 30 1 -0.3633 0.8878 -0.5177 31 1 -0.3634 -0.8922 -0.5099 32 1 1.6890 2.1423 -0.0004 33 1 4.1736 2.0591 -0.0097 34 1 5.3046 -0.1287 -0.0087 35 1 2.0414 -3.2572 -0.5059 36 1 0.4994 -2.3681 -0.5010 37 1 -0.3307 -3.8285 3.4870 38 1 1.2117 -4.7168 3.4831 39 1 -4.0147 -7.0537 0.3597 40 1 -1.9312 -4.8943 4.9372 41 1 -2.1835 -5.8354 7.1986 42 1 -1.0251 -7.9236 7.7994 43 1 0.3796 -9.0746 6.1365 44 1 0.6243 -8.1385 3.8722 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795983138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:33 Heat of formation + Delta-G solvation = -29.389939 kcal Electronic energy + Delta-G solvation = -26594.354621 eV Core-core repulsion = 22862.557274 eV Total energy + Delta-G solvation = -3731.797347 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.61430 -39.67084 -38.56609 -36.08891 -34.15545 -33.84578 -32.71661 -31.73593 -30.22717 -29.32317 -28.03604 -26.92801 -25.86904 -22.98126 -22.63492 -21.95827 -21.73826 -20.66953 -19.21227 -17.17388 -17.10090 -16.98051 -16.81574 -16.04927 -15.63320 -15.49161 -14.90444 -14.49891 -14.33260 -14.25280 -13.81782 -13.43725 -13.36053 -12.97037 -12.83996 -12.78635 -12.71454 -12.53930 -12.43230 -12.19240 -11.88687 -11.77957 -11.43497 -11.10336 -10.79834 -10.56375 -10.41901 -10.17366 -9.98865 -9.93767 -9.69203 -9.63224 -9.54174 -9.16643 -8.99078 -8.49994 -8.21696 -7.85682 -6.04142 -4.03343 0.82054 1.08758 2.08142 2.11856 3.05161 3.09839 3.40096 3.44799 3.47575 3.78528 4.17495 4.48644 4.52499 4.55314 4.60458 4.72498 4.81572 5.17848 5.27152 5.34453 5.40381 5.49976 5.50804 5.51175 5.54215 5.56323 5.66968 5.77591 5.89502 5.92317 5.93413 6.00028 6.06470 6.10218 6.22747 6.29068 6.49508 6.51445 6.65508 6.78498 6.94252 7.03388 7.12996 7.24937 7.51925 7.67921 7.77882 7.83024 8.45425 8.57986 8.93927 9.59977 11.08386 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014111 B = 0.003268 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.826943 B = 8566.866773 C = 9428.565247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 C -0.081 4.081 4 C -0.166 4.166 5 C 0.090 3.910 6 N -0.464 5.464 7 C 0.126 3.874 8 C 0.114 3.886 9 O -0.363 6.363 10 C 0.460 3.540 11 O -0.471 6.471 12 C -0.088 4.088 13 C 0.053 3.947 14 H 0.052 0.948 15 C -0.497 4.497 16 H 0.073 0.927 17 C 0.088 3.912 18 N -0.896 5.896 19 Si 0.867 3.133 20 H -0.276 1.276 21 H -0.254 1.254 22 H -0.293 1.293 23 C -0.041 4.041 24 C -0.099 4.099 25 C -0.128 4.128 26 C -0.147 4.147 27 C -0.127 4.127 28 C -0.133 4.133 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.157 0.843 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.263 0.737 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.779 12.356 2.587 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.112 4.112 3 C -0.107 4.107 4 C -0.185 4.185 5 C -0.068 4.068 6 N -0.173 5.173 7 C -0.012 4.012 8 C 0.040 3.960 9 O -0.281 6.281 10 C 0.301 3.699 11 O -0.354 6.354 12 C -0.126 4.126 13 C 0.033 3.967 14 H 0.070 0.930 15 C -0.534 4.534 16 H 0.091 0.909 17 C -0.115 4.115 18 N -0.533 5.533 19 Si 0.695 3.305 20 H -0.201 1.201 21 H -0.178 1.178 22 H -0.219 1.219 23 C -0.042 4.042 24 C -0.117 4.117 25 C -0.146 4.146 26 C -0.165 4.165 27 C -0.146 4.146 28 C -0.151 4.151 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.174 0.826 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.139 0.861 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.940 11.267 2.123 16.554 hybrid contribution -0.130 -0.093 -0.450 0.478 sum 11.810 11.174 1.673 16.344 Atomic orbital electron populations 1.20908 0.89698 1.03492 1.03595 1.20804 0.97965 0.93321 0.99095 1.21495 0.94162 0.98022 0.97036 1.22173 0.95295 0.99647 1.01418 1.22737 1.00298 0.87506 0.96255 1.67441 1.07647 1.31780 1.10470 1.20686 0.89593 0.93736 0.97184 1.21526 0.99390 0.92170 0.82954 1.86549 1.70636 1.41366 1.29559 1.23922 0.74336 0.77883 0.93746 1.90711 1.46007 1.55882 1.42788 1.21473 1.01347 1.00416 0.89315 1.18210 0.97576 0.91126 0.89738 0.93000 1.20623 0.99343 1.05309 1.28113 0.90868 1.24876 0.94340 0.97956 0.94318 1.69873 1.16058 1.35129 1.32280 0.86992 0.80157 0.83622 0.79731 1.20140 1.17819 1.21943 1.20632 0.93251 0.94181 0.96093 1.20989 0.97888 1.00510 0.92310 1.21063 1.00093 0.96567 0.96880 1.20881 0.99902 0.96853 0.98899 1.20966 0.99957 0.99567 0.94066 1.21146 1.00895 0.97134 0.95965 0.89961 0.91132 0.90408 0.84603 0.84684 0.82605 0.89856 0.89240 0.88568 0.90065 0.92744 0.86075 0.87114 0.87384 0.87331 0.86971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.62 36.01 0.35 -0.92 16 2 C -0.11 -1.30 5.90 -104.49 -0.62 -1.92 16 3 C -0.08 -0.77 9.86 -39.28 -0.39 -1.16 16 4 C -0.17 -1.45 10.11 -39.44 -0.40 -1.85 16 5 C 0.09 0.95 11.18 -17.54 -0.20 0.76 16 6 N -0.46 -6.57 10.27 -9.47 -0.10 -6.66 16 7 C 0.13 1.79 6.42 -82.59 -0.53 1.26 16 8 C 0.11 1.82 5.35 36.01 0.19 2.02 16 9 O -0.36 -6.51 10.20 -39.24 -0.40 -6.91 16 10 C 0.46 9.36 7.71 36.01 0.28 9.64 16 11 O -0.47 -11.29 14.77 -18.75 -0.28 -11.56 16 12 C -0.09 -1.67 5.08 -27.88 -0.14 -1.81 16 13 C 0.05 1.18 1.17 -92.93 -0.11 1.07 16 14 H 0.05 1.23 4.93 -51.93 -0.26 0.97 16 15 C -0.50 -13.28 6.88 -34.44 -0.24 -13.51 16 16 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 17 C 0.09 2.52 5.47 -17.82 -0.10 2.43 16 18 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 19 Si 0.87 22.09 27.01 -169.99 -4.59 17.50 16 20 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.25 -5.96 4.71 56.52 0.27 -5.69 16 22 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 23 C -0.04 -0.85 4.65 -104.63 -0.49 -1.33 16 24 C -0.10 -1.90 8.93 -39.58 -0.35 -2.25 16 25 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 26 C -0.15 -2.36 10.05 -39.58 -0.40 -2.76 16 27 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 28 C -0.13 -2.57 8.71 -39.59 -0.34 -2.91 16 29 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 30 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 31 H 0.08 0.90 5.95 -51.93 -0.31 0.59 16 32 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 33 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 34 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.08 1.36 8.13 -51.93 -0.42 0.94 16 36 H 0.09 1.38 5.92 -51.93 -0.31 1.07 16 37 H 0.10 1.71 8.05 -51.93 -0.42 1.29 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.12 2.30 7.87 -52.49 -0.41 1.88 16 41 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 42 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 44 H 0.11 2.11 7.12 -52.48 -0.37 1.73 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -33.49 369.40 -9.30 -42.79 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -6.00 Total: 4.25 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -4.27 Total: -18.36 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 0.68 Total: -33.27 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.68 Total: -18.47 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.59 Total: 17.50 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.49 -9.30 -42.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795983138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.395 kcal (2) G-P(sol) polarization free energy of solvation -33.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds