Wall clock time and date at job start Tue Mar 31 2020 13:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38663 * 120.42204 * 2 1 4 4 C 1.38623 * 118.42386 * 180.24770 * 3 2 1 5 5 C 1.38228 * 119.16034 * 359.74901 * 4 3 2 6 6 N 1.31858 * 120.76071 * 0.02562 * 5 4 3 7 7 C 1.31881 * 121.72515 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.61428 * 179.97438 * 7 6 5 9 9 O 1.45202 * 109.47142 * 89.99898 * 8 7 6 10 10 C 1.34222 * 116.99801 * 180.02562 * 9 8 7 11 11 O 1.20827 * 120.00324 * 359.97438 * 10 9 8 12 12 C 1.50700 * 120.00130 * 180.02562 * 10 9 8 13 13 C 1.52998 * 109.47544 * 179.97438 * 12 10 9 14 14 H 1.09007 * 109.46887 * 53.81672 * 13 12 10 15 15 C 1.50697 * 109.47155 * 293.81685 * 13 12 10 16 16 H 1.07996 * 120.00349 * 324.78882 * 15 13 12 17 17 C 1.37879 * 120.00134 * 144.79100 * 15 13 12 18 18 N 1.31507 * 120.00464 * 181.06646 * 17 15 13 19 19 Si 1.86804 * 119.99609 * 1.34165 * 17 15 13 20 20 H 1.48500 * 109.47160 * 266.74005 * 19 17 15 21 21 H 1.48497 * 109.47511 * 26.74638 * 19 17 15 22 22 H 1.48505 * 109.46900 * 146.74735 * 19 17 15 23 23 C 1.50701 * 109.46972 * 173.81275 * 13 12 10 24 24 C 1.38231 * 119.99796 * 66.67709 * 23 13 12 25 25 C 1.38235 * 119.99741 * 179.78611 * 24 23 13 26 26 C 1.38240 * 120.00191 * 0.43460 * 25 24 23 27 27 C 1.38236 * 119.99460 * 359.81350 * 26 25 24 28 28 C 1.38230 * 120.00169 * 359.97438 * 27 26 25 29 29 H 1.09008 * 109.47095 * 270.25000 * 1 2 3 30 30 H 1.09000 * 109.47197 * 30.24626 * 1 2 3 31 31 H 1.08998 * 109.47732 * 150.25077 * 1 2 3 32 32 H 1.08008 * 120.78943 * 359.97413 * 3 2 1 33 33 H 1.08004 * 120.42284 * 179.73517 * 4 3 2 34 34 H 1.08001 * 119.61592 * 180.02562 * 5 4 3 35 35 H 1.09002 * 109.46866 * 329.99819 * 8 7 6 36 36 H 1.08996 * 109.47154 * 210.00162 * 8 7 6 37 37 H 1.08999 * 109.47252 * 59.99615 * 12 10 9 38 38 H 1.08998 * 109.46896 * 299.99890 * 12 10 9 39 39 H 0.97000 * 120.00777 * 180.27070 * 18 17 15 40 40 H 1.08001 * 120.00369 * 359.97438 * 24 23 13 41 41 H 1.08006 * 119.99904 * 180.27111 * 25 24 23 42 42 H 1.07998 * 120.00179 * 179.83524 * 26 25 24 43 43 H 1.08005 * 119.99238 * 179.97438 * 27 26 25 44 44 H 1.08004 * 119.99637 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1957 0.0000 4 6 3.5945 1.1474 -0.0053 5 6 4.2256 -0.0824 -0.0050 6 7 3.5253 -1.1997 -0.0004 7 6 2.2066 -1.1916 0.0047 8 6 1.4538 -2.4972 0.0093 9 8 1.2174 -2.9148 1.3798 10 6 0.5539 -4.0676 1.5596 11 8 0.1825 -4.7065 0.6037 12 6 0.2711 -4.5646 2.9539 13 6 -0.4923 -5.8884 2.8785 14 1 0.0588 -6.5904 2.2527 15 6 -1.8560 -5.6487 2.2837 16 1 -2.3846 -4.7315 2.4971 17 6 -2.4289 -6.6005 1.4671 18 7 -3.6098 -6.3825 0.9311 19 14 -1.5310 -8.2032 1.1282 20 1 -0.7353 -8.0707 -0.1186 21 1 -0.6248 -8.5125 2.2632 22 1 -2.5191 -9.3004 0.9704 23 6 -0.6422 -6.4614 4.2643 24 6 -1.4263 -5.8123 5.1994 25 6 -1.5674 -6.3402 6.4692 26 6 -0.9171 -7.5126 6.8065 27 6 -0.1288 -8.1589 5.8728 28 6 0.0087 -7.6332 4.6018 29 1 -0.3634 0.0045 1.0277 30 1 -0.3633 0.8878 -0.5177 31 1 -0.3634 -0.8922 -0.5099 32 1 1.6890 2.1423 -0.0004 33 1 4.1736 2.0591 -0.0097 34 1 5.3046 -0.1287 -0.0087 35 1 2.0414 -3.2572 -0.5059 36 1 0.4994 -2.3681 -0.5010 37 1 -0.3307 -3.8285 3.4870 38 1 1.2117 -4.7168 3.4831 39 1 -4.0147 -7.0537 0.3597 40 1 -1.9312 -4.8943 4.9372 41 1 -2.1835 -5.8354 7.1986 42 1 -1.0251 -7.9236 7.7994 43 1 0.3796 -9.0746 6.1365 44 1 0.6243 -8.1385 3.8722 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795983138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:32 Heat of formation + Delta-G solvation = -47.978793 kcal Electronic energy + Delta-G solvation = -26595.160694 eV Core-core repulsion = 22862.557274 eV Total energy + Delta-G solvation = -3732.603420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.72749 -41.05418 -40.00019 -37.64123 -35.90982 -34.73673 -33.83688 -33.58194 -31.60411 -30.75556 -29.16092 -28.15834 -27.42509 -24.57558 -23.63734 -23.31980 -22.73182 -22.12014 -20.87808 -19.06983 -18.67614 -18.11918 -17.95824 -17.41407 -16.98218 -16.80661 -16.30338 -15.87217 -15.62987 -15.49480 -15.22392 -14.87296 -14.60935 -14.37986 -14.15684 -13.98334 -13.94164 -13.74172 -13.69941 -13.48147 -13.34494 -13.27164 -12.96094 -12.70283 -12.37579 -12.10819 -11.92977 -11.82657 -11.63999 -11.54690 -11.34897 -11.05672 -10.73481 -10.65405 -10.46810 -9.89917 -9.60675 -9.32313 -8.24414 -6.23297 -0.06844 0.28393 0.68680 0.72451 1.32610 1.36746 1.40459 1.42625 1.79187 2.39794 2.83076 3.07214 3.16165 3.23658 3.59012 3.81185 3.85960 4.01047 4.08431 4.09619 4.24815 4.25933 4.30942 4.33239 4.38816 4.48099 4.54060 4.58763 4.59277 4.69300 4.75334 4.79402 4.85123 4.97278 5.12963 5.14216 5.17782 5.27098 5.34807 5.39250 5.48678 5.63137 5.73121 5.77558 5.82254 6.01641 6.31121 6.35842 6.76624 6.94535 6.96668 7.41912 8.91922 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014111 B = 0.003268 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.826943 B = 8566.866773 C = 9428.565247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.118 4.118 3 C -0.079 4.079 4 C -0.148 4.148 5 C 0.078 3.922 6 N -0.500 5.500 7 C 0.093 3.907 8 C 0.114 3.886 9 O -0.357 6.357 10 C 0.463 3.537 11 O -0.516 6.516 12 C -0.085 4.085 13 C 0.055 3.945 14 H 0.037 0.963 15 C -0.476 4.476 16 H 0.040 0.960 17 C 0.029 3.971 18 N -0.949 5.949 19 Si 0.913 3.087 20 H -0.289 1.289 21 H -0.222 1.222 22 H -0.295 1.295 23 C -0.065 4.065 24 C -0.117 4.117 25 C -0.126 4.126 26 C -0.138 4.138 27 C -0.125 4.125 28 C -0.149 4.149 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.171 0.829 33 H 0.178 0.822 34 H 0.184 0.816 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.260 0.740 40 H 0.111 0.889 41 H 0.139 0.861 42 H 0.147 0.853 43 H 0.141 0.859 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.993 13.568 5.182 20.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.121 4.121 3 C -0.105 4.105 4 C -0.167 4.167 5 C -0.080 4.080 6 N -0.210 5.210 7 C -0.043 4.043 8 C 0.039 3.961 9 O -0.274 6.274 10 C 0.306 3.694 11 O -0.403 6.403 12 C -0.122 4.122 13 C 0.036 3.964 14 H 0.056 0.944 15 C -0.513 4.513 16 H 0.058 0.942 17 C -0.168 4.168 18 N -0.590 5.590 19 Si 0.740 3.260 20 H -0.215 1.215 21 H -0.145 1.145 22 H -0.222 1.222 23 C -0.065 4.065 24 C -0.135 4.135 25 C -0.144 4.144 26 C -0.156 4.156 27 C -0.143 4.143 28 C -0.168 4.168 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.076 0.924 32 H 0.188 0.812 33 H 0.195 0.805 34 H 0.201 0.799 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.068 0.932 40 H 0.129 0.871 41 H 0.157 0.843 42 H 0.164 0.836 43 H 0.158 0.842 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 14.187 12.493 4.758 19.493 hybrid contribution -0.699 -0.275 -1.163 1.384 sum 13.487 12.218 3.595 18.550 Atomic orbital electron populations 1.20912 0.89413 1.03870 1.03411 1.20956 0.98373 0.93562 0.99174 1.21938 0.94736 0.98238 0.95541 1.22641 0.95279 1.00422 0.98391 1.23324 1.01571 0.87429 0.95632 1.67334 1.07751 1.34083 1.11822 1.20434 0.90092 0.93277 1.00491 1.21618 0.99530 0.93374 0.81532 1.86529 1.69710 1.40060 1.31138 1.24214 0.73454 0.77949 0.93793 1.90694 1.48054 1.57340 1.44222 1.21446 1.02713 0.99069 0.88986 1.18079 0.94951 0.92530 0.90842 0.94433 1.20822 1.00591 1.03229 1.26689 0.94168 1.25576 0.95033 1.01167 0.95008 1.70008 1.18089 1.36320 1.34549 0.86253 0.79422 0.80416 0.79952 1.21545 1.14504 1.22162 1.20365 0.95511 0.95441 0.95221 1.21037 0.98248 1.00669 0.93553 1.21403 0.99916 0.96918 0.96174 1.21355 0.98033 0.95843 1.00346 1.21340 0.99592 1.00430 0.92938 1.21266 1.01313 0.96716 0.97465 0.90405 0.88354 0.92411 0.81168 0.80494 0.79920 0.91230 0.89579 0.87402 0.86786 0.93155 0.87112 0.84302 0.83567 0.84155 0.87005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 9.62 71.24 0.69 -1.84 16 2 C -0.12 -2.73 5.90 -19.78 -0.12 -2.85 16 3 C -0.08 -1.25 9.86 22.46 0.22 -1.03 16 4 C -0.15 -2.05 10.11 22.36 0.23 -1.82 16 5 C 0.08 1.50 11.18 84.69 0.95 2.45 16 6 N -0.50 -14.12 10.27 -183.88 -1.89 -16.01 16 7 C 0.09 2.73 6.42 42.54 0.27 3.00 16 8 C 0.11 3.90 5.35 71.24 0.38 4.28 16 9 O -0.36 -13.40 10.20 -51.34 -0.52 -13.92 16 10 C 0.46 19.66 7.71 71.24 0.55 20.21 16 11 O -0.52 -26.26 14.77 21.96 0.32 -25.93 16 12 C -0.08 -3.27 5.08 29.85 0.15 -3.11 16 13 C 0.06 2.51 1.17 -12.29 -0.01 2.50 16 14 H 0.04 1.81 4.93 -2.38 -0.01 1.80 16 15 C -0.48 -26.55 6.88 25.60 0.18 -26.37 16 16 H 0.04 2.45 8.06 -2.91 -0.02 2.42 16 17 C 0.03 1.75 5.47 84.66 0.46 2.21 16 18 N -0.95 -61.08 13.96 21.45 0.30 -60.78 16 19 Si 0.91 46.97 27.01 68.60 1.85 48.82 16 20 H -0.29 -15.33 7.11 99.48 0.71 -14.63 16 21 H -0.22 -10.16 4.71 99.48 0.47 -9.69 16 22 H -0.29 -15.08 7.11 99.48 0.71 -14.37 16 23 C -0.06 -2.63 4.65 -19.87 -0.09 -2.72 16 24 C -0.12 -4.38 8.93 22.27 0.20 -4.18 16 25 C -0.13 -3.86 10.05 22.27 0.22 -3.63 16 26 C -0.14 -3.81 10.05 22.27 0.22 -3.58 16 27 C -0.13 -3.74 10.05 22.27 0.22 -3.51 16 28 C -0.15 -5.45 8.71 22.27 0.19 -5.26 16 29 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.10 1.48 8.10 -2.39 -0.02 1.46 16 31 H 0.06 1.44 5.95 -2.39 -0.01 1.42 16 32 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 33 H 0.18 0.97 8.06 -2.91 -0.02 0.94 16 34 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 35 H 0.07 2.50 8.13 -2.39 -0.02 2.48 16 36 H 0.09 2.93 5.92 -2.39 -0.01 2.92 16 37 H 0.11 3.90 8.05 -2.39 -0.02 3.88 16 38 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 39 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 40 H 0.11 4.26 7.87 -2.91 -0.02 4.24 16 41 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 42 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 43 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 44 H 0.11 4.00 7.12 -2.91 -0.02 3.98 16 Total: -1.00 -78.20 369.40 5.75 -72.46 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.77 Total: 20.65 kcal Atomic # 6 Polarization: -30.20 SS G_CDS: 4.92 Total: -25.28 kcal Atomic # 7 Polarization: -75.20 SS G_CDS: -1.59 Total: -76.79 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -0.20 Total: -39.85 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 1.85 Total: 48.82 kcal Total: -78.20 5.75 -72.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795983138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.479 kcal (2) G-P(sol) polarization free energy of solvation -78.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds