Wall clock time and date at job start Tue Mar 31 2020 13:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38675 * 120.41913 * 2 1 4 4 C 1.38627 * 118.42113 * 180.24536 * 3 2 1 5 5 C 1.38225 * 119.16240 * 359.75152 * 4 3 2 6 6 N 1.31854 * 120.76380 * 359.97438 * 5 4 3 7 7 C 1.31891 * 121.72386 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.61370 * 179.97438 * 7 6 5 9 9 O 1.45195 * 109.47194 * 90.00732 * 8 7 6 10 10 C 1.34231 * 117.00375 * 179.97438 * 9 8 7 11 11 O 1.20831 * 119.99902 * 359.97438 * 10 9 8 12 12 C 1.50696 * 120.00094 * 180.27488 * 10 9 8 13 13 C 1.53003 * 109.47242 * 179.72256 * 12 10 9 14 14 H 1.09006 * 109.46918 * 305.00192 * 13 12 10 15 15 C 1.50702 * 109.47049 * 64.99836 * 13 12 10 16 16 H 1.07998 * 119.99897 * 29.59215 * 15 13 12 17 17 C 1.37876 * 119.99874 * 209.59551 * 15 13 12 18 18 N 1.31507 * 120.00273 * 4.95194 * 17 15 13 19 19 Si 1.86805 * 119.99750 * 184.95478 * 17 15 13 20 20 H 1.48505 * 109.47175 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47079 * 119.99774 * 19 17 15 22 22 H 1.48494 * 109.47043 * 239.99913 * 19 17 15 23 23 C 1.50697 * 109.47160 * 185.00130 * 13 12 10 24 24 C 1.38240 * 120.00075 * 296.77138 * 23 13 12 25 25 C 1.38229 * 119.99781 * 179.81021 * 24 23 13 26 26 C 1.38233 * 120.00272 * 0.40720 * 25 24 23 27 27 C 1.38232 * 119.99789 * 359.84593 * 26 25 24 28 28 C 1.38228 * 120.00348 * 359.96527 * 27 26 25 29 29 H 1.09000 * 109.46908 * 270.25320 * 1 2 3 30 30 H 1.08998 * 109.47259 * 30.25335 * 1 2 3 31 31 H 1.08994 * 109.46910 * 150.25275 * 1 2 3 32 32 H 1.07998 * 120.78707 * 359.96932 * 3 2 1 33 33 H 1.08001 * 120.41482 * 179.72929 * 4 3 2 34 34 H 1.08003 * 119.61585 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.47384 * 330.00328 * 8 7 6 36 36 H 1.09005 * 109.47171 * 210.00451 * 8 7 6 37 37 H 1.08995 * 109.47384 * 299.71933 * 12 10 9 38 38 H 1.09004 * 109.47077 * 59.72205 * 12 10 9 39 39 H 0.97005 * 120.00370 * 180.02562 * 18 17 15 40 40 H 1.07999 * 119.99563 * 0.02562 * 24 23 13 41 41 H 1.08000 * 119.99398 * 180.22925 * 25 24 23 42 42 H 1.08002 * 119.99690 * 179.83527 * 26 25 24 43 43 H 1.08009 * 119.99876 * 179.97438 * 27 26 25 44 44 H 1.08000 * 120.00295 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1475 -0.0052 5 6 4.2256 -0.0823 -0.0050 6 7 3.5255 -1.1996 0.0006 7 6 2.2067 -1.1916 0.0067 8 6 1.4541 -2.4971 0.0124 9 8 1.2186 -2.9140 1.3831 10 6 0.5543 -4.0664 1.5641 11 8 0.1816 -4.7053 0.6086 12 6 0.2675 -4.5597 2.9588 13 6 -0.5014 -5.8805 2.8845 14 1 -1.3972 -5.7458 2.2783 15 6 0.3736 -6.9367 2.2600 16 1 1.4461 -6.8878 2.3770 17 6 -0.1952 -7.9653 1.5393 18 7 -1.4908 -7.9725 1.3140 19 14 0.8747 -9.3487 0.8828 20 1 2.2881 -9.1075 1.2693 21 1 0.4184 -10.6412 1.4543 22 1 0.7682 -9.3969 -0.5976 23 6 -0.8951 -6.3113 4.2739 24 6 0.0799 -6.6093 5.2075 25 6 -0.2813 -7.0007 6.4831 26 6 -1.6174 -7.1023 6.8227 27 6 -2.5923 -6.8093 5.8875 28 6 -2.2312 -6.4141 4.6131 29 1 -0.3633 0.0045 1.0277 30 1 -0.3634 0.8877 -0.5177 31 1 -0.3633 -0.8922 -0.5099 32 1 1.6890 2.1423 -0.0005 33 1 4.1735 2.0593 -0.0098 34 1 5.3047 -0.1284 -0.0086 35 1 2.0413 -3.2573 -0.5028 36 1 0.4992 -2.3683 -0.4973 37 1 1.2067 -4.7156 3.4894 38 1 -0.3315 -3.8199 3.4899 39 1 -1.8910 -8.6964 0.8073 40 1 1.1238 -6.5330 4.9412 41 1 0.4805 -7.2300 7.2135 42 1 -1.8995 -7.4106 7.8185 43 1 -3.6363 -6.8890 6.1527 44 1 -2.9930 -6.1857 3.8824 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795983139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:36 Heat of formation + Delta-G solvation = -31.401070 kcal Electronic energy + Delta-G solvation = -26483.499477 eV Core-core repulsion = 22751.614921 eV Total energy + Delta-G solvation = -3731.884556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.59686 -39.56343 -38.34860 -35.98018 -34.03159 -33.85676 -32.69936 -31.51022 -30.02648 -29.16174 -28.00107 -26.85065 -25.55843 -23.09771 -22.66704 -21.81791 -21.61120 -20.56446 -19.26636 -17.14431 -16.98283 -16.83682 -16.53618 -15.87241 -15.54606 -15.35708 -14.84797 -14.48957 -14.28326 -14.11864 -13.87005 -13.38012 -13.35239 -12.99844 -12.88629 -12.70235 -12.52752 -12.47234 -12.16176 -11.89720 -11.78785 -11.65354 -11.36690 -10.90823 -10.77169 -10.56799 -10.28283 -10.11024 -10.09757 -9.94840 -9.64464 -9.52641 -9.43142 -9.10376 -8.96570 -8.38946 -8.05891 -7.65859 -5.97469 -3.97869 0.82802 1.08993 2.27492 2.31416 3.13758 3.17036 3.35696 3.43125 3.46211 3.81109 4.20188 4.49041 4.52260 4.59782 4.71233 4.72794 4.80967 5.16883 5.30923 5.37461 5.40104 5.48432 5.50052 5.58525 5.65577 5.71670 5.81851 5.83780 5.90484 5.97385 6.06027 6.08112 6.12808 6.26750 6.39522 6.49439 6.51282 6.69133 6.87745 6.98377 7.14346 7.29864 7.40562 7.49294 7.84084 7.85251 7.91520 8.00754 8.31578 8.69412 9.02124 9.64429 11.12368 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.003258 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.444997 B = 8592.260879 C = 9737.202611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.113 4.113 3 C -0.081 4.081 4 C -0.167 4.167 5 C 0.091 3.909 6 N -0.463 5.463 7 C 0.128 3.872 8 C 0.114 3.886 9 O -0.366 6.366 10 C 0.456 3.544 11 O -0.463 6.463 12 C -0.092 4.092 13 C 0.075 3.925 14 H 0.075 0.925 15 C -0.499 4.499 16 H 0.054 0.946 17 C 0.078 3.922 18 N -0.879 5.879 19 Si 0.886 3.114 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.024 4.024 24 C -0.113 4.113 25 C -0.132 4.132 26 C -0.153 4.153 27 C -0.129 4.129 28 C -0.118 4.118 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.157 0.843 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.259 0.741 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.147 17.110 1.312 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.115 4.115 3 C -0.107 4.107 4 C -0.186 4.186 5 C -0.066 4.066 6 N -0.172 5.172 7 C -0.010 4.010 8 C 0.039 3.961 9 O -0.284 6.284 10 C 0.297 3.703 11 O -0.345 6.345 12 C -0.130 4.130 13 C 0.056 3.944 14 H 0.093 0.907 15 C -0.536 4.536 16 H 0.072 0.928 17 C -0.125 4.125 18 N -0.516 5.516 19 Si 0.714 3.286 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.024 4.024 24 C -0.131 4.131 25 C -0.150 4.150 26 C -0.171 4.171 27 C -0.147 4.147 28 C -0.136 4.136 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.174 0.826 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.133 0.867 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.315 15.982 0.874 16.578 hybrid contribution 0.252 -0.161 -0.525 0.605 sum 4.567 15.822 0.349 16.471 Atomic orbital electron populations 1.20885 0.89904 1.03327 1.03406 1.20779 0.97849 0.93360 0.99550 1.21481 0.94177 0.97959 0.97090 1.22173 0.95292 0.99653 1.01515 1.22758 1.00357 0.87484 0.96034 1.67466 1.07663 1.31735 1.10329 1.20714 0.89630 0.93743 0.96917 1.21494 0.99158 0.92207 0.83202 1.86567 1.71143 1.41418 1.29303 1.24023 0.74881 0.77411 0.93970 1.90737 1.46854 1.54276 1.42677 1.21594 1.02717 0.99796 0.88929 1.17924 0.97922 0.89317 0.89225 0.90696 1.20766 0.92231 1.08582 1.32027 0.92824 1.24814 0.94816 0.97948 0.94956 1.69904 1.10157 1.31970 1.39587 0.86639 0.80936 0.82336 0.78715 1.19769 1.21108 1.21058 1.20636 0.92102 0.93876 0.95823 1.20978 0.99591 0.99927 0.92632 1.20985 0.95633 1.01603 0.96771 1.20814 0.93395 1.04137 0.98803 1.20983 0.98274 1.01139 0.94281 1.21086 0.96448 1.00672 0.95372 0.90101 0.91184 0.90571 0.84660 0.84691 0.82578 0.89713 0.89603 0.89313 0.90404 0.93091 0.86711 0.87563 0.87742 0.87571 0.86728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.62 36.01 0.35 -0.79 16 2 C -0.11 -1.30 5.90 -104.48 -0.62 -1.92 16 3 C -0.08 -0.75 9.86 -39.28 -0.39 -1.14 16 4 C -0.17 -1.46 10.11 -39.44 -0.40 -1.86 16 5 C 0.09 0.99 11.18 -17.55 -0.20 0.80 16 6 N -0.46 -6.73 10.27 -9.47 -0.10 -6.83 16 7 C 0.13 1.83 6.42 -82.59 -0.53 1.30 16 8 C 0.11 1.83 5.35 36.00 0.19 2.02 16 9 O -0.37 -6.67 10.20 -39.26 -0.40 -7.07 16 10 C 0.46 9.49 7.71 36.00 0.28 9.77 16 11 O -0.46 -11.32 14.73 -18.75 -0.28 -11.60 16 12 C -0.09 -1.84 5.06 -27.88 -0.14 -1.98 16 13 C 0.07 1.77 1.69 -92.92 -0.16 1.61 16 14 H 0.07 2.00 6.95 -51.93 -0.36 1.64 16 15 C -0.50 -13.29 6.38 -34.44 -0.22 -13.51 16 16 H 0.05 1.44 7.82 -52.49 -0.41 1.03 16 17 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 18 N -0.88 -25.43 12.85 55.43 0.71 -24.72 16 19 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 23 C -0.02 -0.52 4.77 -104.62 -0.50 -1.02 16 24 C -0.11 -2.27 8.86 -39.58 -0.35 -2.62 16 25 C -0.13 -2.35 10.05 -39.59 -0.40 -2.75 16 26 C -0.15 -2.64 10.05 -39.59 -0.40 -3.04 16 27 C -0.13 -2.34 10.05 -39.59 -0.40 -2.74 16 28 C -0.12 -2.44 9.67 -39.59 -0.38 -2.82 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.08 0.78 5.95 -51.93 -0.31 0.47 16 32 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 33 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.16 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.08 1.46 8.13 -51.93 -0.42 1.03 16 36 H 0.09 1.26 5.92 -51.93 -0.31 0.95 16 37 H 0.09 1.66 7.76 -51.93 -0.40 1.26 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.11 2.23 7.75 -52.49 -0.41 1.82 16 41 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.10 1.50 8.06 -52.49 -0.42 1.07 16 43 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 44 H 0.11 2.38 7.95 -52.49 -0.42 1.97 16 LS Contribution 376.37 15.07 5.67 5.67 Total: -1.00 -32.58 376.37 -9.74 -42.32 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.98 Total: 3.81 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -4.35 Total: -18.59 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: 0.61 Total: -31.55 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.68 Total: -18.67 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.58 -9.74 -42.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795983139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.920 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds