Wall clock time and date at job start Tue Mar 31 2020 13:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38675 * 120.41913 * 2 1 4 4 C 1.38627 * 118.42113 * 180.24536 * 3 2 1 5 5 C 1.38225 * 119.16240 * 359.75152 * 4 3 2 6 6 N 1.31854 * 120.76380 * 359.97438 * 5 4 3 7 7 C 1.31891 * 121.72386 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.61370 * 179.97438 * 7 6 5 9 9 O 1.45195 * 109.47194 * 90.00732 * 8 7 6 10 10 C 1.34231 * 117.00375 * 179.97438 * 9 8 7 11 11 O 1.20831 * 119.99902 * 359.97438 * 10 9 8 12 12 C 1.50696 * 120.00094 * 180.27488 * 10 9 8 13 13 C 1.53003 * 109.47242 * 179.72256 * 12 10 9 14 14 H 1.09006 * 109.46918 * 305.00192 * 13 12 10 15 15 C 1.50702 * 109.47049 * 64.99836 * 13 12 10 16 16 H 1.07998 * 119.99897 * 29.59215 * 15 13 12 17 17 C 1.37876 * 119.99874 * 209.59551 * 15 13 12 18 18 N 1.31507 * 120.00273 * 4.95194 * 17 15 13 19 19 Si 1.86805 * 119.99750 * 184.95478 * 17 15 13 20 20 H 1.48505 * 109.47175 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47079 * 119.99774 * 19 17 15 22 22 H 1.48494 * 109.47043 * 239.99913 * 19 17 15 23 23 C 1.50697 * 109.47160 * 185.00130 * 13 12 10 24 24 C 1.38240 * 120.00075 * 296.77138 * 23 13 12 25 25 C 1.38229 * 119.99781 * 179.81021 * 24 23 13 26 26 C 1.38233 * 120.00272 * 0.40720 * 25 24 23 27 27 C 1.38232 * 119.99789 * 359.84593 * 26 25 24 28 28 C 1.38228 * 120.00348 * 359.96527 * 27 26 25 29 29 H 1.09000 * 109.46908 * 270.25320 * 1 2 3 30 30 H 1.08998 * 109.47259 * 30.25335 * 1 2 3 31 31 H 1.08994 * 109.46910 * 150.25275 * 1 2 3 32 32 H 1.07998 * 120.78707 * 359.96932 * 3 2 1 33 33 H 1.08001 * 120.41482 * 179.72929 * 4 3 2 34 34 H 1.08003 * 119.61585 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.47384 * 330.00328 * 8 7 6 36 36 H 1.09005 * 109.47171 * 210.00451 * 8 7 6 37 37 H 1.08995 * 109.47384 * 299.71933 * 12 10 9 38 38 H 1.09004 * 109.47077 * 59.72205 * 12 10 9 39 39 H 0.97005 * 120.00370 * 180.02562 * 18 17 15 40 40 H 1.07999 * 119.99563 * 0.02562 * 24 23 13 41 41 H 1.08000 * 119.99398 * 180.22925 * 25 24 23 42 42 H 1.08002 * 119.99690 * 179.83527 * 26 25 24 43 43 H 1.08009 * 119.99876 * 179.97438 * 27 26 25 44 44 H 1.08000 * 120.00295 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1475 -0.0052 5 6 4.2256 -0.0823 -0.0050 6 7 3.5255 -1.1996 0.0006 7 6 2.2067 -1.1916 0.0067 8 6 1.4541 -2.4971 0.0124 9 8 1.2186 -2.9140 1.3831 10 6 0.5543 -4.0664 1.5641 11 8 0.1816 -4.7053 0.6086 12 6 0.2675 -4.5597 2.9588 13 6 -0.5014 -5.8805 2.8845 14 1 -1.3972 -5.7458 2.2783 15 6 0.3736 -6.9367 2.2600 16 1 1.4461 -6.8878 2.3770 17 6 -0.1952 -7.9653 1.5393 18 7 -1.4908 -7.9725 1.3140 19 14 0.8747 -9.3487 0.8828 20 1 2.2881 -9.1075 1.2693 21 1 0.4184 -10.6412 1.4543 22 1 0.7682 -9.3969 -0.5976 23 6 -0.8951 -6.3113 4.2739 24 6 0.0799 -6.6093 5.2075 25 6 -0.2813 -7.0007 6.4831 26 6 -1.6174 -7.1023 6.8227 27 6 -2.5923 -6.8093 5.8875 28 6 -2.2312 -6.4141 4.6131 29 1 -0.3633 0.0045 1.0277 30 1 -0.3634 0.8877 -0.5177 31 1 -0.3633 -0.8922 -0.5099 32 1 1.6890 2.1423 -0.0005 33 1 4.1735 2.0593 -0.0098 34 1 5.3047 -0.1284 -0.0086 35 1 2.0413 -3.2573 -0.5028 36 1 0.4992 -2.3683 -0.4973 37 1 1.2067 -4.7156 3.4894 38 1 -0.3315 -3.8199 3.4899 39 1 -1.8910 -8.6964 0.8073 40 1 1.1238 -6.5330 4.9412 41 1 0.4805 -7.2300 7.2135 42 1 -1.8995 -7.4106 7.8185 43 1 -3.6363 -6.8890 6.1527 44 1 -2.9930 -6.1857 3.8824 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795983139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:35 Heat of formation + Delta-G solvation = -48.147701 kcal Electronic energy + Delta-G solvation = -26484.225666 eV Core-core repulsion = 22751.614921 eV Total energy + Delta-G solvation = -3732.610745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.68274 -40.99980 -39.86892 -37.56287 -35.84068 -34.72327 -33.69577 -33.40709 -31.50689 -30.65996 -29.07457 -27.96538 -27.29474 -24.75835 -23.62187 -23.16994 -22.70228 -22.07028 -20.96971 -18.69901 -18.50014 -18.03846 -17.96129 -17.30881 -16.88249 -16.72714 -16.39573 -15.82743 -15.54394 -15.51371 -15.24083 -14.77834 -14.40401 -14.28197 -14.05304 -13.92865 -13.74523 -13.67252 -13.54535 -13.43576 -13.31535 -13.17459 -12.88031 -12.60534 -12.49536 -12.33865 -11.85880 -11.73156 -11.59938 -11.39678 -11.26601 -10.97829 -10.72048 -10.50290 -10.44189 -9.88349 -9.54281 -9.22612 -8.07863 -6.11623 -0.05322 0.29744 0.77926 0.82006 1.34848 1.37502 1.46107 1.47430 1.83513 2.43637 2.84792 3.16340 3.19476 3.33040 3.60854 3.83481 3.87518 4.05024 4.12328 4.23182 4.29845 4.33439 4.35437 4.38603 4.50406 4.54876 4.55726 4.60724 4.69838 4.72616 4.77971 4.88398 4.95315 5.11293 5.14625 5.18846 5.27989 5.36368 5.46326 5.55103 5.61464 5.74406 5.75648 5.83799 5.94014 6.13754 6.37043 6.45188 6.95111 6.97725 7.04397 7.51592 9.01499 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.003258 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.444997 B = 8592.260879 C = 9737.202611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.118 4.118 3 C -0.078 4.078 4 C -0.149 4.149 5 C 0.076 3.924 6 N -0.504 5.504 7 C 0.093 3.907 8 C 0.114 3.886 9 O -0.359 6.359 10 C 0.461 3.539 11 O -0.509 6.509 12 C -0.088 4.088 13 C 0.079 3.921 14 H 0.034 0.966 15 C -0.495 4.495 16 H 0.046 0.954 17 C 0.027 3.973 18 N -0.912 5.912 19 Si 0.933 3.067 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.290 1.290 23 C -0.048 4.048 24 C -0.127 4.127 25 C -0.127 4.127 26 C -0.145 4.145 27 C -0.128 4.128 28 C -0.140 4.140 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.173 0.827 33 H 0.177 0.823 34 H 0.180 0.820 35 H 0.061 0.939 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.256 0.744 40 H 0.115 0.885 41 H 0.140 0.860 42 H 0.144 0.856 43 H 0.134 0.866 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.146 19.293 3.548 20.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.120 4.120 3 C -0.104 4.104 4 C -0.168 4.168 5 C -0.081 4.081 6 N -0.214 5.214 7 C -0.044 4.044 8 C 0.040 3.960 9 O -0.277 6.277 10 C 0.304 3.696 11 O -0.395 6.395 12 C -0.126 4.126 13 C 0.061 3.939 14 H 0.052 0.948 15 C -0.533 4.533 16 H 0.064 0.936 17 C -0.172 4.172 18 N -0.551 5.551 19 Si 0.760 3.240 20 H -0.191 1.191 21 H -0.205 1.205 22 H -0.216 1.216 23 C -0.048 4.048 24 C -0.145 4.145 25 C -0.145 4.145 26 C -0.163 4.163 27 C -0.146 4.146 28 C -0.158 4.158 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.079 0.921 32 H 0.190 0.810 33 H 0.194 0.806 34 H 0.197 0.803 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.065 0.935 40 H 0.133 0.867 41 H 0.158 0.842 42 H 0.162 0.838 43 H 0.152 0.848 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.333 18.184 3.130 19.207 hybrid contribution 0.011 -0.666 -1.168 1.344 sum 5.344 17.518 1.962 18.420 Atomic orbital electron populations 1.20922 0.88970 1.04024 1.03575 1.20988 0.98683 0.93278 0.99033 1.21953 0.94599 0.98352 0.95506 1.22635 0.95474 1.00248 0.98468 1.23292 1.01504 0.87527 0.95816 1.67337 1.08086 1.34170 1.11839 1.20477 0.90012 0.93436 1.00437 1.21610 0.99669 0.93128 0.81624 1.86541 1.70141 1.39988 1.31054 1.24207 0.74024 0.77497 0.93849 1.90718 1.48859 1.55853 1.44080 1.21526 1.03327 0.98893 0.88851 1.17696 0.96023 0.90276 0.89937 0.94794 1.21027 0.92155 1.08826 1.31313 0.93586 1.25456 0.95752 1.00126 0.95908 1.70029 1.11380 1.32612 1.41113 0.85887 0.79922 0.80413 0.77770 1.19126 1.20471 1.21625 1.20437 0.93194 0.95893 0.95291 1.21066 0.99155 1.00722 0.93591 1.21369 0.97030 0.99917 0.96190 1.21284 0.92756 1.02091 1.00153 1.21298 1.00255 0.99908 0.93135 1.21116 0.95791 1.02236 0.96688 0.90130 0.88265 0.92079 0.80956 0.80564 0.80255 0.92028 0.88908 0.87896 0.87601 0.93521 0.86730 0.84188 0.83800 0.84839 0.88372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.16 9.62 71.24 0.69 -1.47 16 2 C -0.12 -2.58 5.90 -19.77 -0.12 -2.70 16 3 C -0.08 -1.19 9.86 22.47 0.22 -0.97 16 4 C -0.15 -2.09 10.11 22.36 0.23 -1.86 16 5 C 0.08 1.54 11.18 84.69 0.95 2.48 16 6 N -0.50 -14.86 10.27 -183.89 -1.89 -16.74 16 7 C 0.09 2.72 6.42 42.53 0.27 2.99 16 8 C 0.11 3.92 5.35 71.23 0.38 4.30 16 9 O -0.36 -13.74 10.20 -51.42 -0.52 -14.26 16 10 C 0.46 20.21 7.71 71.23 0.55 20.76 16 11 O -0.51 -26.63 14.73 21.95 0.32 -26.31 16 12 C -0.09 -3.62 5.06 29.85 0.15 -3.47 16 13 C 0.08 3.92 1.69 -12.29 -0.02 3.90 16 14 H 0.03 1.94 6.95 -2.38 -0.02 1.92 16 15 C -0.50 -27.43 6.38 25.60 0.16 -27.26 16 16 H 0.05 2.55 7.82 -2.91 -0.02 2.53 16 17 C 0.03 1.56 5.45 84.66 0.46 2.02 16 18 N -0.91 -55.36 12.85 21.45 0.28 -55.09 16 19 Si 0.93 46.54 29.54 68.60 2.03 48.57 16 20 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 23 C -0.05 -2.11 4.77 -19.86 -0.09 -2.21 16 24 C -0.13 -4.99 8.86 22.27 0.20 -4.80 16 25 C -0.13 -4.14 10.05 22.27 0.22 -3.91 16 26 C -0.15 -4.45 10.05 22.27 0.22 -4.23 16 27 C -0.13 -4.40 10.05 22.27 0.22 -4.18 16 28 C -0.14 -5.90 9.67 22.27 0.22 -5.68 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.10 1.20 8.10 -2.39 -0.02 1.18 16 31 H 0.06 1.29 5.95 -2.39 -0.01 1.27 16 32 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 33 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 34 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 35 H 0.06 2.34 8.13 -2.39 -0.02 2.32 16 36 H 0.09 2.97 5.92 -2.38 -0.01 2.96 16 37 H 0.10 3.90 7.76 -2.39 -0.02 3.88 16 38 H 0.11 3.69 8.14 -2.38 -0.02 3.67 16 39 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 40 H 0.11 4.39 7.75 -2.91 -0.02 4.37 16 41 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 42 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 43 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 44 H 0.10 4.33 7.95 -2.91 -0.02 4.31 16 Total: -1.00 -75.67 376.37 6.12 -69.55 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 1.00 Total: 20.56 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: 4.91 Total: -26.28 kcal Atomic # 7 Polarization: -70.22 SS G_CDS: -1.61 Total: -71.83 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -0.20 Total: -40.57 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -75.67 6.12 -69.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795983139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.398 kcal (2) G-P(sol) polarization free energy of solvation -75.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds