Wall clock time and date at job start Tue Mar 31 2020 13:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38222 * 120.41861 * 2 1 4 4 N 1.31859 * 120.76547 * 180.02562 * 3 2 1 5 5 C 1.31891 * 121.72050 * 359.71566 * 4 3 2 6 6 C 1.38174 * 120.76751 * 0.57486 * 5 4 3 7 7 C 1.50700 * 120.42028 * 179.70811 * 6 5 4 8 8 O 1.45198 * 109.46944 * 269.72648 * 7 6 5 9 9 C 1.34231 * 116.99996 * 180.02562 * 8 7 6 10 10 O 1.20827 * 119.99674 * 359.97438 * 9 8 7 11 11 C 1.50698 * 120.00114 * 179.97438 * 9 8 7 12 12 C 1.52998 * 109.47172 * 179.97438 * 11 9 8 13 13 H 1.08994 * 109.47379 * 305.97980 * 12 11 9 14 14 C 1.50702 * 109.46736 * 65.97792 * 12 11 9 15 15 H 1.08001 * 119.99997 * 26.91880 * 14 12 11 16 16 C 1.37876 * 120.00335 * 206.91145 * 14 12 11 17 17 N 1.31516 * 119.99513 * 353.28710 * 16 14 12 18 18 Si 1.86795 * 120.00238 * 173.55427 * 16 14 12 19 19 H 1.48504 * 109.47397 * 269.72698 * 18 16 14 20 20 H 1.48494 * 109.47437 * 29.73079 * 18 16 14 21 21 H 1.48505 * 109.47032 * 149.72889 * 18 16 14 22 22 C 1.50698 * 109.47059 * 185.97639 * 12 11 9 23 23 C 1.38237 * 120.00126 * 294.44407 * 22 12 11 24 24 C 1.38237 * 119.99669 * 179.78838 * 23 22 12 25 25 C 1.38230 * 120.00504 * 0.44373 * 24 23 22 26 26 C 1.38240 * 119.99695 * 359.81677 * 25 24 23 27 27 C 1.38230 * 119.99944 * 359.97062 * 26 25 24 28 28 C 1.38627 * 120.42116 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47197 * 269.97193 * 1 2 3 30 30 H 1.09000 * 109.47359 * 29.97390 * 1 2 3 31 31 H 1.08995 * 109.47273 * 149.97530 * 1 2 3 32 32 H 1.08000 * 119.61848 * 0.02562 * 3 2 1 33 33 H 1.07997 * 119.61199 * 180.30778 * 5 4 3 34 34 H 1.09001 * 109.47227 * 149.72654 * 7 6 5 35 35 H 1.08992 * 109.46993 * 29.72439 * 7 6 5 36 36 H 1.09010 * 109.47114 * 59.99918 * 11 9 8 37 37 H 1.08997 * 109.46959 * 299.99845 * 11 9 8 38 38 H 0.96999 * 119.99944 * 354.68325 * 17 16 14 39 39 H 1.07995 * 119.99876 * 0.02562 * 23 22 12 40 40 H 1.08003 * 119.99187 * 180.27775 * 24 23 22 41 41 H 1.07997 * 120.00489 * 179.83259 * 25 24 23 42 42 H 1.07997 * 119.99767 * 179.97438 * 26 25 24 43 43 H 1.08004 * 120.00065 * 180.02562 * 27 26 25 44 44 H 1.08001 * 120.78765 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2256 0.0823 0.0045 6 6 3.5948 -1.1471 -0.0013 7 6 4.4027 -2.4192 -0.0021 8 8 4.6615 -2.8273 -1.3713 9 6 5.3744 -3.9509 -1.5479 10 8 5.7693 -4.5725 -0.5901 11 6 5.6820 -4.4369 -2.9408 12 6 6.5012 -5.7267 -2.8616 13 1 7.3813 -5.5606 -2.2404 14 6 5.6588 -6.8204 -2.2571 15 1 4.5836 -6.7900 -2.3542 16 6 6.2607 -7.8599 -1.5802 17 7 7.5713 -7.9692 -1.5742 18 14 5.2144 -9.1171 -0.6780 19 1 4.9972 -8.6681 0.7207 20 1 3.9041 -9.2538 -1.3632 21 1 5.9103 -10.4290 -0.6743 22 6 6.9335 -6.1331 -4.2468 23 6 5.9888 -6.5099 -5.1830 24 6 6.3852 -6.8785 -6.4551 25 6 7.7267 -6.8791 -6.7881 26 6 8.6719 -6.5075 -5.8502 27 6 8.2753 -6.1347 -4.5796 28 6 2.2089 -1.1954 -0.0005 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8897 -0.5142 32 1 1.6674 2.1276 0.0004 33 1 5.3046 0.1286 0.0090 34 1 3.8464 -3.2032 0.5117 35 1 5.3489 -2.2490 0.5113 36 1 6.2532 -3.6763 -3.4732 37 1 4.7502 -4.6300 -3.4723 38 1 8.1108 -7.3653 -2.1082 39 1 4.9410 -6.5126 -4.9218 40 1 5.6467 -7.1685 -7.1878 41 1 8.0366 -7.1696 -7.7811 42 1 9.7200 -6.5083 -6.1103 43 1 9.0136 -5.8439 -3.8469 44 1 1.6888 -2.1419 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795986758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:43 Heat of formation + Delta-G solvation = -41.193495 kcal Electronic energy + Delta-G solvation = -26208.334909 eV Core-core repulsion = 22476.025721 eV Total energy + Delta-G solvation = -3732.309187 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.58910 -39.75800 -38.52695 -36.20235 -34.34866 -33.84214 -33.05233 -31.44561 -30.16192 -29.24673 -27.61160 -27.04004 -25.16318 -23.39239 -23.04841 -21.77105 -21.41703 -20.68658 -19.61160 -17.23188 -17.18726 -17.02509 -16.81834 -16.07314 -15.86077 -15.57969 -14.59687 -14.51311 -14.20864 -14.14110 -13.73392 -13.47272 -13.38853 -13.26166 -13.06047 -12.80855 -12.69290 -12.52971 -12.44823 -12.25309 -11.88196 -11.65042 -11.56982 -11.06442 -10.77258 -10.49449 -10.33559 -10.22560 -10.11681 -10.01899 -9.81229 -9.67353 -9.60007 -9.07624 -8.74083 -8.38777 -8.18479 -7.71636 -6.32027 -4.03119 0.77704 1.03506 2.14332 2.18311 2.98333 3.11133 3.45550 3.49043 3.62989 3.70828 4.20044 4.48492 4.50605 4.54004 4.61354 4.73033 4.76523 4.92555 5.13290 5.26086 5.31808 5.38531 5.45234 5.54073 5.56068 5.58426 5.68532 5.71117 5.72254 5.91108 5.94996 5.96385 6.04679 6.09768 6.25955 6.33758 6.45894 6.51883 6.72219 6.83561 6.97677 7.09885 7.17905 7.31330 7.63149 7.73495 7.79574 8.09987 8.41289 8.51661 8.86901 9.66767 11.07244 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012574 B = 0.003030 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.312713 B = 9238.162331 C =10375.175729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.142 4.142 3 C 0.101 3.899 4 N -0.484 5.484 5 C 0.114 3.886 6 C -0.134 4.134 7 C 0.110 3.890 8 O -0.368 6.368 9 C 0.458 3.542 10 O -0.468 6.468 11 C -0.088 4.088 12 C 0.069 3.931 13 H 0.052 0.948 14 C -0.577 4.577 15 H 0.048 0.952 16 C 0.034 3.966 17 N -0.903 5.903 18 Si 1.063 2.937 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.286 1.286 22 C -0.035 4.035 23 C -0.105 4.105 24 C -0.130 4.130 25 C -0.150 4.150 26 C -0.124 4.124 27 C -0.128 4.128 28 C -0.055 4.055 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.272 0.728 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.587 13.871 -1.186 16.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.144 4.144 3 C -0.057 4.057 4 N -0.191 5.191 5 C -0.042 4.042 6 C -0.136 4.136 7 C 0.036 3.964 8 O -0.287 6.287 9 C 0.299 3.701 10 O -0.351 6.351 11 C -0.126 4.126 12 C 0.050 3.950 13 H 0.070 0.930 14 C -0.614 4.614 15 H 0.066 0.934 16 C -0.172 4.172 17 N -0.538 5.538 18 Si 0.892 3.108 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.212 1.212 22 C -0.035 4.035 23 C -0.123 4.123 24 C -0.148 4.148 25 C -0.168 4.168 26 C -0.143 4.143 27 C -0.147 4.147 28 C -0.080 4.080 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.172 0.828 33 H 0.175 0.825 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.929 13.150 0.139 15.896 hybrid contribution -0.507 0.294 -0.872 1.050 sum -9.436 13.444 -0.733 16.441 Atomic orbital electron populations 1.20722 0.89991 1.03317 1.02654 1.20946 0.97750 0.93983 1.01730 1.22722 0.90018 0.97488 0.95440 1.67741 1.08339 1.30959 1.12071 1.22717 1.00503 0.86917 0.94112 1.20635 0.94439 0.95721 1.02757 1.21530 0.99335 0.92918 0.82664 1.86593 1.68762 1.43361 1.29979 1.23983 0.75079 0.77218 0.93842 1.90721 1.47856 1.53948 1.42553 1.21482 1.02633 0.99317 0.89156 1.17947 0.96535 0.91212 0.89300 0.93021 1.21603 0.93193 1.08598 1.38013 0.93385 1.25606 0.97325 0.98447 0.95855 1.70707 1.04930 1.38983 1.39173 0.83634 0.74641 0.76083 0.76408 1.21419 1.21598 1.21205 1.20724 0.92376 0.94320 0.96130 1.20936 0.99771 0.99152 0.92476 1.21023 0.95608 1.01345 0.96788 1.20849 0.93485 1.03583 0.98892 1.20969 0.98507 1.00676 0.94101 1.21069 0.96070 1.01655 0.95877 1.21491 0.93274 0.98620 0.94662 0.90844 0.91091 0.91112 0.82771 0.82518 0.90256 0.90242 0.90302 0.89041 0.91654 0.86576 0.87341 0.87488 0.87349 0.87069 0.84496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.04 36.00 0.36 -0.34 16 2 C -0.14 -1.35 5.90 -104.49 -0.62 -1.97 16 3 C 0.10 1.01 10.86 -17.55 -0.19 0.82 16 4 N -0.48 -5.95 10.36 -13.25 -0.14 -6.09 16 5 C 0.11 1.39 10.86 -17.55 -0.19 1.20 16 6 C -0.13 -1.65 5.54 -104.48 -0.58 -2.23 16 7 C 0.11 1.56 5.62 36.01 0.20 1.76 16 8 O -0.37 -6.23 10.20 -39.26 -0.40 -6.63 16 9 C 0.46 9.16 7.71 36.00 0.28 9.44 16 10 O -0.47 -11.10 14.77 -18.75 -0.28 -11.37 16 11 C -0.09 -1.71 5.07 -27.88 -0.14 -1.85 16 12 C 0.07 1.60 1.23 -92.92 -0.11 1.49 16 13 H 0.05 1.35 6.59 -51.93 -0.34 1.00 16 14 C -0.58 -15.23 6.35 -34.44 -0.22 -15.45 16 15 H 0.05 1.27 7.82 -52.49 -0.41 0.86 16 16 C 0.03 0.95 5.45 -17.82 -0.10 0.85 16 17 N -0.90 -26.89 13.56 55.43 0.75 -26.14 16 18 Si 1.06 25.56 29.91 -169.99 -5.08 20.48 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 C -0.03 -0.75 4.54 -104.62 -0.47 -1.23 16 23 C -0.11 -2.11 8.90 -39.58 -0.35 -2.46 16 24 C -0.13 -2.29 10.05 -39.58 -0.40 -2.68 16 25 C -0.15 -2.55 10.05 -39.58 -0.40 -2.94 16 26 C -0.12 -2.23 10.05 -39.58 -0.40 -2.63 16 27 C -0.13 -2.62 9.18 -39.58 -0.36 -2.98 16 28 C -0.05 -0.60 9.55 -39.28 -0.37 -0.97 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 31 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 32 H 0.16 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 35 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 36 H 0.08 1.34 8.14 -51.92 -0.42 0.92 16 37 H 0.09 1.67 7.97 -51.93 -0.41 1.25 16 38 H 0.27 7.96 6.24 -40.82 -0.25 7.70 16 39 H 0.12 2.27 7.85 -52.49 -0.41 1.85 16 40 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 41 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 42 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.11 2.21 7.95 -52.48 -0.42 1.80 16 44 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 378.44 15.07 5.70 5.70 Total: -1.00 -32.70 378.44 -9.62 -42.32 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.11 Total: 3.90 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -4.06 Total: -22.16 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: 0.61 Total: -32.23 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.68 Total: -18.00 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.08 Total: 20.48 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.70 -9.62 -42.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795986758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.124 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds