Wall clock time and date at job start Tue Mar 31 2020 13:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38222 * 120.41861 * 2 1 4 4 N 1.31859 * 120.76547 * 180.02562 * 3 2 1 5 5 C 1.31891 * 121.72050 * 359.71566 * 4 3 2 6 6 C 1.38174 * 120.76751 * 0.57486 * 5 4 3 7 7 C 1.50700 * 120.42028 * 179.70811 * 6 5 4 8 8 O 1.45198 * 109.46944 * 269.72648 * 7 6 5 9 9 C 1.34231 * 116.99996 * 180.02562 * 8 7 6 10 10 O 1.20827 * 119.99674 * 359.97438 * 9 8 7 11 11 C 1.50698 * 120.00114 * 179.97438 * 9 8 7 12 12 C 1.52998 * 109.47172 * 179.97438 * 11 9 8 13 13 H 1.08994 * 109.47379 * 305.97980 * 12 11 9 14 14 C 1.50702 * 109.46736 * 65.97792 * 12 11 9 15 15 H 1.08001 * 119.99997 * 26.91880 * 14 12 11 16 16 C 1.37876 * 120.00335 * 206.91145 * 14 12 11 17 17 N 1.31516 * 119.99513 * 353.28710 * 16 14 12 18 18 Si 1.86795 * 120.00238 * 173.55427 * 16 14 12 19 19 H 1.48504 * 109.47397 * 269.72698 * 18 16 14 20 20 H 1.48494 * 109.47437 * 29.73079 * 18 16 14 21 21 H 1.48505 * 109.47032 * 149.72889 * 18 16 14 22 22 C 1.50698 * 109.47059 * 185.97639 * 12 11 9 23 23 C 1.38237 * 120.00126 * 294.44407 * 22 12 11 24 24 C 1.38237 * 119.99669 * 179.78838 * 23 22 12 25 25 C 1.38230 * 120.00504 * 0.44373 * 24 23 22 26 26 C 1.38240 * 119.99695 * 359.81677 * 25 24 23 27 27 C 1.38230 * 119.99944 * 359.97062 * 26 25 24 28 28 C 1.38627 * 120.42116 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47197 * 269.97193 * 1 2 3 30 30 H 1.09000 * 109.47359 * 29.97390 * 1 2 3 31 31 H 1.08995 * 109.47273 * 149.97530 * 1 2 3 32 32 H 1.08000 * 119.61848 * 0.02562 * 3 2 1 33 33 H 1.07997 * 119.61199 * 180.30778 * 5 4 3 34 34 H 1.09001 * 109.47227 * 149.72654 * 7 6 5 35 35 H 1.08992 * 109.46993 * 29.72439 * 7 6 5 36 36 H 1.09010 * 109.47114 * 59.99918 * 11 9 8 37 37 H 1.08997 * 109.46959 * 299.99845 * 11 9 8 38 38 H 0.96999 * 119.99944 * 354.68325 * 17 16 14 39 39 H 1.07995 * 119.99876 * 0.02562 * 23 22 12 40 40 H 1.08003 * 119.99187 * 180.27775 * 24 23 22 41 41 H 1.07997 * 120.00489 * 179.83259 * 25 24 23 42 42 H 1.07997 * 119.99767 * 179.97438 * 26 25 24 43 43 H 1.08004 * 120.00065 * 180.02562 * 27 26 25 44 44 H 1.08001 * 120.78765 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2256 0.0823 0.0045 6 6 3.5948 -1.1471 -0.0013 7 6 4.4027 -2.4192 -0.0021 8 8 4.6615 -2.8273 -1.3713 9 6 5.3744 -3.9509 -1.5479 10 8 5.7693 -4.5725 -0.5901 11 6 5.6820 -4.4369 -2.9408 12 6 6.5012 -5.7267 -2.8616 13 1 7.3813 -5.5606 -2.2404 14 6 5.6588 -6.8204 -2.2571 15 1 4.5836 -6.7900 -2.3542 16 6 6.2607 -7.8599 -1.5802 17 7 7.5713 -7.9692 -1.5742 18 14 5.2144 -9.1171 -0.6780 19 1 4.9972 -8.6681 0.7207 20 1 3.9041 -9.2538 -1.3632 21 1 5.9103 -10.4290 -0.6743 22 6 6.9335 -6.1331 -4.2468 23 6 5.9888 -6.5099 -5.1830 24 6 6.3852 -6.8785 -6.4551 25 6 7.7267 -6.8791 -6.7881 26 6 8.6719 -6.5075 -5.8502 27 6 8.2753 -6.1347 -4.5796 28 6 2.2089 -1.1954 -0.0005 29 1 -0.3633 -0.0005 1.0276 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8897 -0.5142 32 1 1.6674 2.1276 0.0004 33 1 5.3046 0.1286 0.0090 34 1 3.8464 -3.2032 0.5117 35 1 5.3489 -2.2490 0.5113 36 1 6.2532 -3.6763 -3.4732 37 1 4.7502 -4.6300 -3.4723 38 1 8.1108 -7.3653 -2.1082 39 1 4.9410 -6.5126 -4.9218 40 1 5.6467 -7.1685 -7.1878 41 1 8.0366 -7.1696 -7.7811 42 1 9.7200 -6.5083 -6.1103 43 1 9.0136 -5.8439 -3.8469 44 1 1.6888 -2.1419 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795986758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:42 Heat of formation + Delta-G solvation = -57.354129 kcal Electronic energy + Delta-G solvation = -26209.035686 eV Core-core repulsion = 22476.025721 eV Total energy + Delta-G solvation = -3733.009965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.68504 -41.09493 -40.02714 -37.71050 -36.13229 -34.58977 -34.08433 -33.33820 -31.62273 -30.73798 -28.36217 -28.16999 -26.93659 -24.88854 -24.17205 -23.24369 -22.46638 -22.03868 -21.29469 -18.92023 -18.62589 -18.05843 -17.99076 -17.50056 -17.23508 -16.98070 -16.05615 -15.74693 -15.67133 -15.33233 -15.21866 -14.92697 -14.41010 -14.25820 -14.14477 -14.08862 -13.97941 -13.81564 -13.61234 -13.39806 -13.23150 -13.19265 -12.82714 -12.65537 -12.50241 -12.09701 -11.96270 -11.77078 -11.74453 -11.56509 -11.42998 -10.77292 -10.65583 -10.51784 -10.45646 -9.90103 -9.65115 -9.30698 -8.48036 -6.17278 -0.10847 0.18587 0.66810 0.71018 1.36899 1.49439 1.58179 1.72772 1.80860 2.60071 2.77069 3.08819 3.30972 3.35009 3.61361 3.64937 3.87845 3.93197 4.04025 4.09707 4.12710 4.23930 4.26734 4.29742 4.35719 4.37806 4.44537 4.56646 4.65567 4.75968 4.81047 4.83033 4.83315 4.97644 5.11611 5.18480 5.19187 5.25045 5.35006 5.38618 5.45397 5.66723 5.73902 5.79769 5.90171 6.18646 6.27880 6.37212 6.72827 6.88222 6.94797 7.58839 8.92119 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012574 B = 0.003030 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.312713 B = 9238.162331 C =10375.175729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.136 4.136 3 C 0.098 3.902 4 N -0.505 5.505 5 C 0.102 3.898 6 C -0.147 4.147 7 C 0.109 3.891 8 O -0.360 6.360 9 C 0.464 3.536 10 O -0.514 6.514 11 C -0.085 4.085 12 C 0.072 3.928 13 H 0.012 0.988 14 C -0.568 4.568 15 H 0.043 0.957 16 C -0.020 4.020 17 N -0.940 5.940 18 Si 1.099 2.901 19 H -0.287 1.287 20 H -0.267 1.267 21 H -0.288 1.288 22 C -0.058 4.058 23 C -0.122 4.122 24 C -0.125 4.125 25 C -0.143 4.143 26 C -0.125 4.125 27 C -0.150 4.150 28 C -0.064 4.064 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.185 0.815 33 H 0.163 0.837 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.263 0.737 39 H 0.115 0.885 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.136 0.864 43 H 0.099 0.901 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.713 14.697 -3.183 19.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.138 4.138 3 C -0.059 4.059 4 N -0.212 5.212 5 C -0.054 4.054 6 C -0.149 4.149 7 C 0.035 3.965 8 O -0.279 6.279 9 C 0.307 3.693 10 O -0.400 6.400 11 C -0.123 4.123 12 C 0.053 3.947 13 H 0.030 0.970 14 C -0.606 4.606 15 H 0.062 0.938 16 C -0.219 4.219 17 N -0.578 5.578 18 Si 0.923 3.077 19 H -0.213 1.213 20 H -0.191 1.191 21 H -0.214 1.214 22 C -0.059 4.059 23 C -0.140 4.140 24 C -0.143 4.143 25 C -0.160 4.160 26 C -0.143 4.143 27 C -0.169 4.169 28 C -0.090 4.090 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.202 0.798 33 H 0.180 0.820 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.073 0.927 39 H 0.133 0.867 40 H 0.160 0.840 41 H 0.165 0.835 42 H 0.154 0.846 43 H 0.117 0.883 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.084 14.010 -1.882 17.963 hybrid contribution 0.091 0.198 -0.315 0.383 sum -10.993 14.208 -2.196 18.098 Atomic orbital electron populations 1.20805 0.87441 1.04427 1.03795 1.21287 0.99489 0.93042 0.99979 1.23304 0.89487 0.99071 0.94055 1.67778 1.09625 1.30905 1.12930 1.22832 1.01040 0.86980 0.94528 1.20491 0.95012 0.94663 1.04706 1.21693 0.99850 0.93892 0.81027 1.86565 1.67615 1.41761 1.31926 1.24057 0.74363 0.77322 0.93513 1.90707 1.49822 1.55618 1.43887 1.21414 1.03086 0.98376 0.89411 1.17766 0.94988 0.92065 0.89892 0.96988 1.21856 0.93160 1.08580 1.36955 0.93848 1.26735 0.97628 1.00574 0.97004 1.70791 1.05858 1.40055 1.41070 0.83183 0.74477 0.74244 0.75789 1.21345 1.19148 1.21365 1.20525 0.93430 0.96313 0.95620 1.21033 0.99393 1.00047 0.93503 1.21412 0.96931 0.99761 0.96216 1.21328 0.92900 1.01555 1.00244 1.21309 1.00442 0.99528 0.93036 1.21145 0.95517 1.03016 0.97198 1.21738 0.92822 0.99918 0.94532 0.89536 0.89281 0.90750 0.79772 0.82005 0.90464 0.90183 0.87832 0.87475 0.92696 0.86698 0.83952 0.83547 0.84611 0.88313 0.83532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.04 71.24 0.72 -0.33 16 2 C -0.14 -2.30 5.90 -19.78 -0.12 -2.41 16 3 C 0.10 1.77 10.86 84.68 0.92 2.69 16 4 N -0.50 -11.94 10.36 -195.85 -2.03 -13.97 16 5 C 0.10 2.48 10.86 84.67 0.92 3.40 16 6 C -0.15 -3.61 5.54 -19.78 -0.11 -3.72 16 7 C 0.11 3.18 5.62 71.24 0.40 3.58 16 8 O -0.36 -12.35 10.20 -51.42 -0.52 -12.88 16 9 C 0.46 19.11 7.71 71.24 0.55 19.66 16 10 O -0.51 -25.52 14.77 21.96 0.32 -25.19 16 11 C -0.09 -3.36 5.07 29.85 0.15 -3.21 16 12 C 0.07 3.47 1.23 -12.29 -0.02 3.45 16 13 H 0.01 0.66 6.59 -2.39 -0.02 0.65 16 14 C -0.57 -30.80 6.35 25.60 0.16 -30.64 16 15 H 0.04 2.33 7.82 -2.91 -0.02 2.31 16 16 C -0.02 -1.17 5.45 84.65 0.46 -0.70 16 17 N -0.94 -58.38 13.56 21.45 0.29 -58.09 16 18 Si 1.10 52.40 29.91 68.60 2.05 54.46 16 19 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 22 C -0.06 -2.56 4.54 -19.87 -0.09 -2.65 16 23 C -0.12 -4.75 8.90 22.27 0.20 -4.55 16 24 C -0.13 -4.04 10.05 22.27 0.22 -3.82 16 25 C -0.14 -4.33 10.05 22.27 0.22 -4.10 16 26 C -0.13 -4.25 10.05 22.27 0.22 -4.03 16 27 C -0.15 -6.22 9.18 22.27 0.20 -6.02 16 28 C -0.06 -1.34 9.55 22.47 0.21 -1.13 16 29 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.09 0.57 8.09 -2.39 -0.02 0.55 16 31 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 32 H 0.19 2.07 8.06 -2.91 -0.02 2.04 16 33 H 0.16 3.51 8.06 -2.91 -0.02 3.48 16 34 H 0.08 2.26 8.09 -2.39 -0.02 2.24 16 35 H 0.08 2.29 8.08 -2.39 -0.02 2.27 16 36 H 0.10 3.53 8.14 -2.38 -0.02 3.51 16 37 H 0.11 3.87 7.97 -2.39 -0.02 3.85 16 38 H 0.26 16.26 6.24 -92.71 -0.58 15.68 16 39 H 0.11 4.40 7.85 -2.91 -0.02 4.37 16 40 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 41 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 42 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 43 H 0.10 4.19 7.95 -2.91 -0.02 4.16 16 44 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -73.63 378.44 6.53 -67.10 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 1.18 Total: 23.10 kcal Atomic # 6 Polarization: -39.76 SS G_CDS: 5.24 Total: -34.53 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -1.74 Total: -72.06 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -0.20 Total: -38.07 kcal Atomic # 14 Polarization: 52.40 SS G_CDS: 2.05 Total: 54.46 kcal Total: -73.63 6.53 -67.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795986758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.750 kcal (2) G-P(sol) polarization free energy of solvation -73.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds