Wall clock time and date at job start Tue Mar 31 2020 13:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38226 * 119.62033 * 2 1 4 4 C 1.38627 * 119.16019 * 179.97438 * 3 2 1 5 5 C 1.38667 * 118.42109 * 0.02562 * 4 3 2 6 6 C 1.50708 * 120.41495 * 180.02562 * 5 4 3 7 7 O 1.45199 * 109.47134 * 90.00065 * 6 5 4 8 8 C 1.34229 * 116.99637 * 180.02562 * 7 6 5 9 9 O 1.20829 * 120.00363 * 359.97438 * 8 7 6 10 10 C 1.50704 * 119.99683 * 179.97438 * 8 7 6 11 11 C 1.53005 * 109.47019 * 179.97438 * 10 8 7 12 12 H 1.09005 * 109.46488 * 55.00435 * 11 10 8 13 13 C 1.50699 * 109.47085 * 295.00448 * 11 10 8 14 14 H 1.08001 * 120.00243 * 325.83718 * 13 11 10 15 15 C 1.37882 * 119.99769 * 145.83948 * 13 11 10 16 16 N 1.31514 * 119.99987 * 6.11396 * 15 13 11 17 17 Si 1.86797 * 119.99882 * 186.10932 * 15 13 11 18 18 H 1.48506 * 109.46624 * 90.00291 * 17 15 13 19 19 H 1.48499 * 109.47400 * 209.99939 * 17 15 13 20 20 H 1.48497 * 109.47497 * 330.00442 * 17 15 13 21 21 C 1.50701 * 109.47253 * 174.99973 * 11 10 8 22 22 C 1.38234 * 119.99720 * 63.45747 * 21 11 10 23 23 C 1.38233 * 120.00065 * 179.80856 * 22 21 11 24 24 C 1.38236 * 119.99772 * 0.40454 * 23 22 21 25 25 C 1.38234 * 120.00070 * 359.85020 * 24 23 22 26 26 C 1.38230 * 119.99857 * 243.73912 * 21 11 10 27 27 C 1.38180 * 119.16737 * 0.26951 * 5 4 3 28 28 N 1.31858 * 119.61461 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46704 * 89.99912 * 1 2 3 30 30 H 1.09002 * 109.47029 * 209.99757 * 1 2 3 31 31 H 1.09004 * 109.47042 * 330.00037 * 1 2 3 32 32 H 1.08003 * 120.41602 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.78653 * 179.97438 * 4 3 2 34 34 H 1.08996 * 109.46974 * 329.99301 * 6 5 4 35 35 H 1.09006 * 109.46738 * 209.99966 * 6 5 4 36 36 H 1.08997 * 109.47060 * 299.99712 * 10 8 7 37 37 H 1.09000 * 109.46712 * 60.00617 * 10 8 7 38 38 H 0.96997 * 119.99909 * 179.97438 * 16 15 13 39 39 H 1.07999 * 120.00076 * 0.02562 * 22 21 11 40 40 H 1.07998 * 120.00111 * 180.23477 * 23 22 21 41 41 H 1.07997 * 120.00293 * 179.83057 * 24 23 22 42 42 H 1.08004 * 120.00203 * 179.97438 * 25 24 23 43 43 H 1.08002 * 120.00607 * 359.97438 * 26 21 11 44 44 H 1.07995 * 119.61773 * 179.70884 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 0.0005 5 6 4.2266 -0.0343 0.0005 6 6 5.7323 -0.0988 0.0017 7 8 6.2148 -0.1202 1.3710 8 6 7.5442 -0.1767 1.5478 9 8 8.2803 -0.2078 0.5901 10 6 8.1186 -0.2014 2.9409 11 6 9.6452 -0.2669 2.8619 12 1 10.0133 0.5600 2.2545 13 6 10.0603 -1.5735 2.2362 14 1 9.4804 -2.4667 2.4161 15 6 11.1804 -1.6287 1.4341 16 7 11.9539 -0.5722 1.3113 17 14 11.5993 -3.2041 0.5220 18 1 10.9487 -3.1910 -0.8129 19 1 13.0715 -3.3024 0.3542 20 1 11.1106 -4.3711 1.2994 21 6 10.2247 -0.1678 4.2495 22 6 9.9562 -1.1518 5.1825 23 6 10.4909 -1.0630 6.4541 24 6 11.2874 0.0140 6.7953 25 6 11.5517 1.0007 5.8639 26 6 11.0200 0.9100 4.5910 27 6 3.4766 -1.1949 -0.0057 28 7 2.1586 -1.1463 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6508 2.1373 0.0004 33 1 4.1367 2.1139 0.0001 34 1 6.1338 0.7749 -0.5116 35 1 6.0575 -1.0034 -0.5123 36 1 7.8204 0.7020 3.4729 37 1 7.7448 -1.0765 3.4725 38 1 12.7421 -0.6111 0.7473 39 1 9.3314 -1.9917 4.9169 40 1 10.2842 -1.8337 7.1819 41 1 11.7030 0.0849 7.7896 42 1 12.1737 1.8425 6.1305 43 1 11.2265 1.6809 3.8633 44 1 3.9755 -2.1527 -0.0105 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796777515.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:23 Heat of formation + Delta-G solvation = -36.249546 kcal Electronic energy + Delta-G solvation = -26088.242118 eV Core-core repulsion = 22356.147316 eV Total energy + Delta-G solvation = -3732.094802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.53660 -39.65031 -38.36517 -36.11724 -34.06571 -33.66182 -32.48936 -31.55744 -30.03408 -29.55593 -28.74810 -26.07017 -25.08830 -23.67719 -22.94883 -21.72214 -21.55961 -20.60144 -19.29550 -17.02051 -16.99118 -16.63792 -16.55822 -15.90153 -15.77936 -15.40512 -14.88506 -14.63079 -14.39126 -14.13244 -13.90218 -13.41702 -13.22403 -13.12951 -12.82204 -12.57536 -12.53106 -12.41181 -12.28215 -11.99959 -11.75036 -11.66925 -11.61200 -10.93053 -10.78938 -10.62196 -10.29289 -10.24036 -10.13862 -10.03195 -9.68410 -9.57238 -9.47522 -9.11026 -8.98777 -8.43154 -8.06454 -7.65610 -6.01157 -4.02246 0.80955 1.09780 2.26779 2.31028 3.10296 3.18203 3.34631 3.40279 3.41929 3.75851 4.10023 4.46003 4.50593 4.63768 4.72190 4.73486 4.81713 5.11917 5.28815 5.30425 5.33984 5.37069 5.46393 5.61041 5.64932 5.70598 5.73797 5.80491 5.82590 5.91415 6.03546 6.08697 6.11642 6.24839 6.38634 6.47666 6.50755 6.67653 6.86524 6.96638 7.10357 7.29177 7.37804 7.47701 7.78491 7.79773 7.90343 7.98482 8.28393 8.64104 8.98267 9.60965 11.08706 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012857 B = 0.002958 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.258110 B = 9462.259927 C =10791.423789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.127 3.873 3 C -0.176 4.176 4 C -0.050 4.050 5 C -0.145 4.145 6 C 0.111 3.889 7 O -0.369 6.369 8 C 0.456 3.544 9 O -0.465 6.465 10 C -0.094 4.094 11 C 0.077 3.923 12 H 0.074 0.926 13 C -0.502 4.502 14 H 0.053 0.947 15 C 0.080 3.920 16 N -0.879 5.879 17 Si 0.887 3.113 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.022 4.022 22 C -0.114 4.114 23 C -0.131 4.131 24 C -0.154 4.154 25 C -0.128 4.128 26 C -0.117 4.117 27 C 0.128 3.872 28 N -0.488 5.488 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.260 0.740 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.114 0.886 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.413 4.638 1.154 17.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.010 4.010 3 C -0.196 4.196 4 C -0.076 4.076 5 C -0.147 4.147 6 C 0.036 3.964 7 O -0.289 6.289 8 C 0.297 3.703 9 O -0.347 6.347 10 C -0.132 4.132 11 C 0.058 3.942 12 H 0.092 0.908 13 C -0.539 4.539 14 H 0.071 0.929 15 C -0.124 4.124 16 N -0.516 5.516 17 Si 0.715 3.285 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.200 1.200 21 C -0.023 4.023 22 C -0.132 4.132 23 C -0.149 4.149 24 C -0.172 4.172 25 C -0.146 4.146 26 C -0.135 4.135 27 C -0.030 4.030 28 N -0.197 5.197 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.132 0.868 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.132 0.868 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -16.493 3.916 0.720 16.967 hybrid contribution 1.106 -0.142 -0.687 1.310 sum -15.387 3.774 0.033 15.843 Atomic orbital electron populations 1.20721 0.88823 1.03527 1.03051 1.21376 0.97113 0.88497 0.94042 1.21944 0.94664 0.99343 1.03671 1.21561 0.94369 0.97996 0.93642 1.20635 0.95700 0.94638 1.03692 1.21498 0.88532 1.03528 0.82804 1.86602 1.26924 1.85505 1.29843 1.24040 0.79024 0.73260 0.93959 1.90730 1.59333 1.42140 1.42542 1.21637 0.99830 1.02779 0.88969 1.17912 0.86076 1.00920 0.89304 0.90822 1.20733 1.10928 0.93405 1.28821 0.92863 1.24822 0.95932 0.95965 0.95689 1.69909 1.14467 1.28936 1.38273 0.86676 0.77299 0.83872 0.80618 1.20585 1.21390 1.19966 1.20609 0.94582 0.91415 0.95699 1.20960 1.00748 0.98822 0.92700 1.20980 0.99184 0.97954 0.96807 1.20811 1.01519 0.96021 0.98828 1.20985 1.00544 0.98771 0.94315 1.21076 0.98489 0.98634 0.95350 1.22737 0.89058 0.98203 0.92955 1.67593 1.09689 1.29305 1.13097 0.90396 0.90403 0.90689 0.84649 0.84488 0.90520 0.90209 0.90409 0.89298 0.92989 0.86785 0.87575 0.87745 0.87578 0.86787 0.82370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 10.17 36.01 0.37 -0.38 16 2 C 0.13 1.35 6.78 -82.58 -0.56 0.79 16 3 C -0.18 -1.68 9.74 -39.44 -0.38 -2.07 16 4 C -0.05 -0.54 9.86 -39.28 -0.39 -0.92 16 5 C -0.14 -1.81 5.54 -104.48 -0.58 -2.39 16 6 C 0.11 1.59 5.62 36.01 0.20 1.79 16 7 O -0.37 -6.29 10.20 -39.25 -0.40 -6.69 16 8 C 0.46 9.15 7.71 36.01 0.28 9.43 16 9 O -0.47 -11.05 14.73 -18.75 -0.28 -11.33 16 10 C -0.09 -1.82 5.06 -27.88 -0.14 -1.96 16 11 C 0.08 1.78 1.67 -92.92 -0.16 1.63 16 12 H 0.07 1.95 6.98 -51.93 -0.36 1.58 16 13 C -0.50 -13.14 6.37 -34.44 -0.22 -13.36 16 14 H 0.05 1.39 7.82 -52.49 -0.41 0.98 16 15 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 16 N -0.88 -25.21 12.87 55.43 0.71 -24.50 16 17 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.02 -0.49 4.77 -104.63 -0.50 -0.99 16 22 C -0.11 -2.27 8.86 -39.58 -0.35 -2.62 16 23 C -0.13 -2.32 10.05 -39.58 -0.40 -2.72 16 24 C -0.15 -2.63 10.05 -39.58 -0.40 -3.03 16 25 C -0.13 -2.32 10.05 -39.58 -0.40 -2.72 16 26 C -0.12 -2.42 9.67 -39.58 -0.38 -2.81 16 27 C 0.13 1.60 10.86 -17.55 -0.19 1.41 16 28 N -0.49 -6.21 10.27 -9.47 -0.10 -6.31 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 33 H 0.14 1.23 8.06 -52.48 -0.42 0.80 16 34 H 0.08 1.06 8.09 -51.93 -0.42 0.64 16 35 H 0.08 1.14 8.09 -51.93 -0.42 0.72 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.09 1.61 7.77 -51.93 -0.40 1.20 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 39 H 0.11 2.18 7.76 -52.49 -0.41 1.78 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 41 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 43 H 0.11 2.36 7.95 -52.49 -0.42 1.94 16 44 H 0.16 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 380.83 15.07 5.74 5.74 Total: -1.00 -31.81 380.83 -9.84 -41.65 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.20 Total: 3.52 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -4.29 Total: -18.82 kcal Atomic # 7 Polarization: -31.42 SS G_CDS: 0.62 Total: -30.81 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.68 Total: -18.02 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.81 -9.84 -41.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796777515.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.401 kcal (2) G-P(sol) polarization free energy of solvation -31.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds