Wall clock time and date at job start Tue Mar 31 2020 13:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38226 * 119.62033 * 2 1 4 4 C 1.38627 * 119.16019 * 179.97438 * 3 2 1 5 5 C 1.38667 * 118.42109 * 0.02562 * 4 3 2 6 6 C 1.50708 * 120.41495 * 180.02562 * 5 4 3 7 7 O 1.45199 * 109.47134 * 90.00065 * 6 5 4 8 8 C 1.34229 * 116.99637 * 180.02562 * 7 6 5 9 9 O 1.20829 * 120.00363 * 359.97438 * 8 7 6 10 10 C 1.50704 * 119.99683 * 179.97438 * 8 7 6 11 11 C 1.53005 * 109.47019 * 179.97438 * 10 8 7 12 12 H 1.09005 * 109.46488 * 55.00435 * 11 10 8 13 13 C 1.50699 * 109.47085 * 295.00448 * 11 10 8 14 14 H 1.08001 * 120.00243 * 325.83718 * 13 11 10 15 15 C 1.37882 * 119.99769 * 145.83948 * 13 11 10 16 16 N 1.31514 * 119.99987 * 6.11396 * 15 13 11 17 17 Si 1.86797 * 119.99882 * 186.10932 * 15 13 11 18 18 H 1.48506 * 109.46624 * 90.00291 * 17 15 13 19 19 H 1.48499 * 109.47400 * 209.99939 * 17 15 13 20 20 H 1.48497 * 109.47497 * 330.00442 * 17 15 13 21 21 C 1.50701 * 109.47253 * 174.99973 * 11 10 8 22 22 C 1.38234 * 119.99720 * 63.45747 * 21 11 10 23 23 C 1.38233 * 120.00065 * 179.80856 * 22 21 11 24 24 C 1.38236 * 119.99772 * 0.40454 * 23 22 21 25 25 C 1.38234 * 120.00070 * 359.85020 * 24 23 22 26 26 C 1.38230 * 119.99857 * 243.73912 * 21 11 10 27 27 C 1.38180 * 119.16737 * 0.26951 * 5 4 3 28 28 N 1.31858 * 119.61461 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46704 * 89.99912 * 1 2 3 30 30 H 1.09002 * 109.47029 * 209.99757 * 1 2 3 31 31 H 1.09004 * 109.47042 * 330.00037 * 1 2 3 32 32 H 1.08003 * 120.41602 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.78653 * 179.97438 * 4 3 2 34 34 H 1.08996 * 109.46974 * 329.99301 * 6 5 4 35 35 H 1.09006 * 109.46738 * 209.99966 * 6 5 4 36 36 H 1.08997 * 109.47060 * 299.99712 * 10 8 7 37 37 H 1.09000 * 109.46712 * 60.00617 * 10 8 7 38 38 H 0.96997 * 119.99909 * 179.97438 * 16 15 13 39 39 H 1.07999 * 120.00076 * 0.02562 * 22 21 11 40 40 H 1.07998 * 120.00111 * 180.23477 * 23 22 21 41 41 H 1.07997 * 120.00293 * 179.83057 * 24 23 22 42 42 H 1.08004 * 120.00203 * 179.97438 * 25 24 23 43 43 H 1.08002 * 120.00607 * 359.97438 * 26 21 11 44 44 H 1.07995 * 119.61773 * 179.70884 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 0.0005 5 6 4.2266 -0.0343 0.0005 6 6 5.7323 -0.0988 0.0017 7 8 6.2148 -0.1202 1.3710 8 6 7.5442 -0.1767 1.5478 9 8 8.2803 -0.2078 0.5901 10 6 8.1186 -0.2014 2.9409 11 6 9.6452 -0.2669 2.8619 12 1 10.0133 0.5600 2.2545 13 6 10.0603 -1.5735 2.2362 14 1 9.4804 -2.4667 2.4161 15 6 11.1804 -1.6287 1.4341 16 7 11.9539 -0.5722 1.3113 17 14 11.5993 -3.2041 0.5220 18 1 10.9487 -3.1910 -0.8129 19 1 13.0715 -3.3024 0.3542 20 1 11.1106 -4.3711 1.2994 21 6 10.2247 -0.1678 4.2495 22 6 9.9562 -1.1518 5.1825 23 6 10.4909 -1.0630 6.4541 24 6 11.2874 0.0140 6.7953 25 6 11.5517 1.0007 5.8639 26 6 11.0200 0.9100 4.5910 27 6 3.4766 -1.1949 -0.0057 28 7 2.1586 -1.1463 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6508 2.1373 0.0004 33 1 4.1367 2.1139 0.0001 34 1 6.1338 0.7749 -0.5116 35 1 6.0575 -1.0034 -0.5123 36 1 7.8204 0.7020 3.4729 37 1 7.7448 -1.0765 3.4725 38 1 12.7421 -0.6111 0.7473 39 1 9.3314 -1.9917 4.9169 40 1 10.2842 -1.8337 7.1819 41 1 11.7030 0.0849 7.7896 42 1 12.1737 1.8425 6.1305 43 1 11.2265 1.6809 3.8633 44 1 3.9755 -2.1527 -0.0105 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796777515.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:22 Heat of formation + Delta-G solvation = -51.683806 kcal Electronic energy + Delta-G solvation = -26088.911398 eV Core-core repulsion = 22356.147316 eV Total energy + Delta-G solvation = -3732.764082 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.59620 -41.02291 -39.86372 -37.60982 -35.83051 -34.61690 -33.47521 -33.31278 -31.49961 -30.79471 -29.90239 -27.75857 -26.29864 -24.71815 -24.41267 -23.16600 -22.53777 -22.05838 -20.95433 -18.64096 -18.48558 -17.90530 -17.78167 -17.26879 -16.97113 -16.74393 -16.44195 -15.93251 -15.54180 -15.49116 -15.36417 -14.69807 -14.43378 -14.22916 -14.09730 -13.96643 -13.67425 -13.64634 -13.48757 -13.27943 -13.13293 -13.01727 -12.87388 -12.65788 -12.53381 -12.48154 -11.83886 -11.73757 -11.66117 -11.40025 -11.26276 -10.97747 -10.83993 -10.50422 -10.46613 -9.89302 -9.53523 -9.21088 -8.07926 -6.11824 -0.08383 0.24962 0.78568 0.83095 1.36169 1.39940 1.45270 1.49795 1.89727 2.44254 2.79556 3.17239 3.28740 3.33962 3.64501 3.70761 3.86950 3.92462 4.14781 4.24125 4.29488 4.35641 4.37818 4.41121 4.51475 4.55239 4.56081 4.69859 4.71645 4.79164 4.81132 4.90158 4.96023 5.10208 5.13979 5.16257 5.25787 5.36492 5.47535 5.57399 5.59723 5.70632 5.76111 5.84487 5.94128 6.13823 6.37635 6.46057 6.93854 6.95760 7.07127 7.52303 9.01400 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012857 B = 0.002958 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.258110 B = 9462.259927 C =10791.423789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.118 3.882 3 C -0.170 4.170 4 C -0.054 4.054 5 C -0.160 4.160 6 C 0.111 3.889 7 O -0.362 6.362 8 C 0.462 3.538 9 O -0.511 6.511 10 C -0.091 4.091 11 C 0.081 3.919 12 H 0.031 0.969 13 C -0.497 4.497 14 H 0.050 0.950 15 C 0.028 3.972 16 N -0.913 5.913 17 Si 0.934 3.066 18 H -0.286 1.286 19 H -0.287 1.287 20 H -0.264 1.264 21 C -0.047 4.047 22 C -0.128 4.128 23 C -0.127 4.127 24 C -0.146 4.146 25 C -0.128 4.128 26 C -0.140 4.140 27 C 0.114 3.886 28 N -0.512 5.512 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.171 0.829 33 H 0.154 0.846 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.256 0.744 39 H 0.116 0.884 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.133 0.867 43 H 0.097 0.903 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.180 4.895 3.248 19.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.019 4.019 3 C -0.189 4.189 4 C -0.079 4.079 5 C -0.162 4.162 6 C 0.037 3.963 7 O -0.281 6.281 8 C 0.305 3.695 9 O -0.397 6.397 10 C -0.128 4.128 11 C 0.062 3.938 12 H 0.050 0.950 13 C -0.534 4.534 14 H 0.068 0.932 15 C -0.172 4.172 16 N -0.552 5.552 17 Si 0.761 3.239 18 H -0.213 1.213 19 H -0.212 1.212 20 H -0.188 1.188 21 C -0.048 4.048 22 C -0.146 4.146 23 C -0.145 4.145 24 C -0.164 4.164 25 C -0.146 4.146 26 C -0.159 4.159 27 C -0.042 4.042 28 N -0.222 5.222 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.189 0.811 33 H 0.172 0.828 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.064 0.936 39 H 0.134 0.866 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.151 0.849 43 H 0.115 0.885 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -18.297 4.160 2.834 18.976 hybrid contribution 1.498 -0.155 -1.272 1.972 sum -16.798 4.004 1.562 17.340 Atomic orbital electron populations 1.20832 0.86373 1.04545 1.04164 1.22051 0.98843 0.88320 0.92695 1.22318 0.94130 1.00476 1.01978 1.21853 0.95321 0.97866 0.92893 1.20494 0.94214 0.95689 1.05810 1.21647 0.90041 1.03450 0.81191 1.86572 1.25031 1.84725 1.31747 1.24135 0.79649 0.71991 0.93679 1.90717 1.60607 1.44482 1.43889 1.21547 0.97380 1.04751 0.89169 1.17688 0.88447 0.97829 0.89828 0.95018 1.21030 1.09942 0.94405 1.28068 0.93188 1.25469 0.96504 0.98208 0.96997 1.70036 1.15062 1.30507 1.39620 0.85928 0.76967 0.81629 0.79367 1.21279 1.21247 1.18797 1.20456 0.95939 0.93031 0.95335 1.21060 1.01531 0.98399 0.93585 1.21369 0.98036 0.98805 0.96291 1.21275 1.00189 0.94799 1.00139 1.21295 1.00090 1.00004 0.93220 1.21109 0.99567 0.98571 0.96629 1.22823 0.89461 0.98472 0.93470 1.67636 1.09592 1.30763 1.14188 0.89089 0.90901 0.88173 0.81117 0.82820 0.90200 0.90803 0.87850 0.87648 0.93551 0.86624 0.84220 0.83887 0.84938 0.88467 0.82256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.20 10.17 71.24 0.72 -0.47 16 2 C 0.12 2.28 6.78 42.55 0.29 2.57 16 3 C -0.17 -2.80 9.74 22.36 0.22 -2.58 16 4 C -0.05 -1.07 9.86 22.47 0.22 -0.85 16 5 C -0.16 -3.98 5.54 -19.77 -0.11 -4.08 16 6 C 0.11 3.25 5.62 71.24 0.40 3.65 16 7 O -0.36 -12.46 10.20 -51.40 -0.52 -12.99 16 8 C 0.46 19.03 7.71 71.24 0.55 19.58 16 9 O -0.51 -25.40 14.73 21.95 0.32 -25.08 16 10 C -0.09 -3.56 5.06 29.85 0.15 -3.41 16 11 C 0.08 3.90 1.67 -12.28 -0.02 3.87 16 12 H 0.03 1.78 6.98 -2.38 -0.02 1.76 16 13 C -0.50 -26.74 6.37 25.60 0.16 -26.57 16 14 H 0.05 2.65 7.82 -2.91 -0.02 2.63 16 15 C 0.03 1.58 5.45 84.66 0.46 2.04 16 16 N -0.91 -54.70 12.87 21.45 0.28 -54.43 16 17 Si 0.93 45.72 29.54 68.60 2.03 47.74 16 18 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 19 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 20 H -0.26 -12.27 7.11 99.48 0.71 -11.57 16 21 C -0.05 -2.06 4.77 -19.87 -0.09 -2.16 16 22 C -0.13 -4.93 8.86 22.27 0.20 -4.73 16 23 C -0.13 -4.09 10.05 22.27 0.22 -3.87 16 24 C -0.15 -4.47 10.05 22.27 0.22 -4.24 16 25 C -0.13 -4.39 10.05 22.27 0.22 -4.17 16 26 C -0.14 -5.87 9.67 22.27 0.22 -5.66 16 27 C 0.11 2.90 10.86 84.67 0.92 3.82 16 28 N -0.51 -12.73 10.27 -183.88 -1.89 -14.62 16 29 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 31 H 0.10 0.67 8.08 -2.38 -0.02 0.65 16 32 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 33 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.08 2.27 8.09 -2.39 -0.02 2.25 16 35 H 0.07 2.23 8.09 -2.38 -0.02 2.21 16 36 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 37 H 0.11 3.76 7.77 -2.39 -0.02 3.74 16 38 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 39 H 0.12 4.31 7.76 -2.91 -0.02 4.29 16 40 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 41 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 42 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 43 H 0.10 4.26 7.95 -2.91 -0.02 4.24 16 44 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -71.71 380.83 6.16 -65.55 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.99 Total: 21.09 kcal Atomic # 6 Polarization: -32.22 SS G_CDS: 4.96 Total: -27.27 kcal Atomic # 7 Polarization: -67.44 SS G_CDS: -1.61 Total: -69.05 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -0.20 Total: -38.07 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -71.71 6.16 -65.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796777515.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.868 kcal (2) G-P(sol) polarization free energy of solvation -71.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds