Wall clock time and date at job start Tue Mar 31 2020 13:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38218 * 119.62150 * 2 1 4 4 C 1.38631 * 119.16505 * 179.97438 * 3 2 1 5 5 C 1.38667 * 118.41669 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.41767 * 180.02562 * 5 4 3 7 7 O 1.45199 * 109.46718 * 90.00543 * 6 5 4 8 8 C 1.34231 * 116.99861 * 180.02562 * 7 6 5 9 9 O 1.20825 * 119.99935 * 359.97438 * 8 7 6 10 10 C 1.50708 * 120.00150 * 179.97438 * 8 7 6 11 11 C 1.52996 * 109.46908 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.47262 * 304.99977 * 11 10 8 13 13 C 1.50697 * 109.47253 * 65.00194 * 11 10 8 14 14 H 1.07997 * 120.00438 * 26.93969 * 13 11 10 15 15 C 1.37882 * 119.99838 * 206.93733 * 13 11 10 16 16 N 1.31515 * 119.99950 * 186.61656 * 15 13 11 17 17 Si 1.86800 * 119.99904 * 6.89639 * 15 13 11 18 18 H 1.48506 * 109.47129 * 274.24829 * 17 15 13 19 19 H 1.48500 * 109.47565 * 34.24890 * 17 15 13 20 20 H 1.48504 * 109.47137 * 154.25109 * 17 15 13 21 21 C 1.50702 * 109.46850 * 185.00273 * 11 10 8 22 22 C 1.38239 * 119.99938 * 297.93536 * 21 11 10 23 23 C 1.38233 * 120.00026 * 179.78971 * 22 21 11 24 24 C 1.38230 * 119.99954 * 0.43738 * 23 22 21 25 25 C 1.38239 * 120.00054 * 359.81860 * 24 23 22 26 26 C 1.38233 * 120.00197 * 118.21398 * 21 11 10 27 27 C 1.38181 * 119.16515 * 0.27711 * 5 4 3 28 28 N 1.31862 * 119.61500 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47446 * 89.99804 * 1 2 3 30 30 H 1.08994 * 109.47159 * 210.00176 * 1 2 3 31 31 H 1.09004 * 109.46791 * 330.00073 * 1 2 3 32 32 H 1.08007 * 120.42315 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.79269 * 179.97438 * 4 3 2 34 34 H 1.09003 * 109.47178 * 330.00280 * 6 5 4 35 35 H 1.09001 * 109.47264 * 209.99875 * 6 5 4 36 36 H 1.08993 * 109.46654 * 59.99919 * 10 8 7 37 37 H 1.08996 * 109.47027 * 300.00103 * 10 8 7 38 38 H 0.97001 * 119.99552 * 180.27438 * 16 15 13 39 39 H 1.08004 * 119.99421 * 0.02562 * 22 21 11 40 40 H 1.08005 * 120.00039 * 180.27989 * 23 22 21 41 41 H 1.08005 * 120.00375 * 179.83526 * 24 23 22 42 42 H 1.08004 * 119.99592 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.00232 * 359.97388 * 26 21 11 44 44 H 1.08006 * 119.62037 * 179.70230 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2015 0.0000 4 6 3.5764 1.1905 0.0005 5 6 4.2266 -0.0343 0.0016 6 6 5.7322 -0.0989 0.0028 7 8 6.2146 -0.1192 1.3722 8 6 7.5440 -0.1756 1.5492 9 8 8.2801 -0.2076 0.5916 10 6 8.1184 -0.1992 2.9423 11 6 9.6450 -0.2636 2.8634 12 1 9.9417 -1.1189 2.2564 13 6 10.1695 1.0029 2.2373 14 1 9.6050 1.9199 2.3195 15 6 11.3702 0.9908 1.5596 16 7 11.8919 2.1175 1.1260 17 14 12.2520 -0.6267 1.2503 18 1 13.0935 -0.9644 2.4264 19 1 11.2515 -1.7022 1.0324 20 1 13.1121 -0.4993 0.0465 21 6 10.2139 -0.4109 4.2511 22 6 10.0052 0.5797 5.1925 23 6 10.5233 0.4425 6.4667 24 6 11.2577 -0.6810 6.7969 25 6 11.4709 -1.6692 5.8540 26 6 10.9492 -1.5340 4.5811 27 6 3.4766 -1.1948 -0.0037 28 7 2.1586 -1.1464 0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6509 2.1373 -0.0004 33 1 4.1367 2.1138 0.0001 34 1 6.1338 0.7745 -0.5111 35 1 6.0575 -1.0039 -0.5103 36 1 7.7445 -1.0737 3.4746 37 1 7.8202 0.7046 3.4736 38 1 12.7346 2.1086 0.6457 39 1 9.4341 1.4590 4.9334 40 1 10.3564 1.2144 7.2035 41 1 11.6648 -0.7870 7.7917 42 1 12.0451 -2.5468 6.1120 43 1 11.1157 -2.3060 3.8445 44 1 3.9754 -2.1528 -0.0078 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796777678.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:26 Heat of formation + Delta-G solvation = -33.185639 kcal Electronic energy + Delta-G solvation = -26148.715831 eV Core-core repulsion = 22416.753890 eV Total energy + Delta-G solvation = -3731.961941 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.56557 -39.76586 -38.59898 -36.23033 -34.20186 -33.69400 -32.50242 -31.77555 -30.25625 -29.65182 -28.88428 -26.40579 -25.18378 -23.68602 -22.80418 -21.95714 -21.61650 -20.73249 -19.24391 -17.19819 -17.06770 -16.92843 -16.64464 -16.09623 -15.86479 -15.52222 -14.97991 -14.65362 -14.44407 -14.27131 -13.89562 -13.42702 -13.31598 -13.13299 -12.85165 -12.75705 -12.67249 -12.53092 -12.38319 -12.26548 -12.00023 -11.90289 -11.62297 -11.24716 -10.86778 -10.57259 -10.42975 -10.31990 -10.06650 -9.99960 -9.76403 -9.64586 -9.57551 -9.20704 -9.01967 -8.54376 -8.25023 -7.88525 -6.07757 -4.05500 0.78868 1.08846 2.05419 2.09918 2.98692 3.11372 3.35175 3.40756 3.42493 3.71979 4.07748 4.45389 4.50243 4.50620 4.61058 4.72355 4.79962 5.09821 5.22192 5.28697 5.29829 5.36208 5.39949 5.48051 5.52033 5.58996 5.64290 5.66821 5.75618 5.84459 5.89776 5.91431 6.00833 6.10092 6.18949 6.26419 6.43009 6.49028 6.63563 6.75489 6.93622 6.96908 7.10546 7.21303 7.50276 7.63341 7.74944 7.77471 8.41853 8.52040 8.90769 9.55643 11.04983 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015130 B = 0.002877 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.241416 B = 9729.814835 C =10695.526702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.128 3.872 3 C -0.176 4.176 4 C -0.048 4.048 5 C -0.146 4.146 6 C 0.111 3.889 7 O -0.367 6.367 8 C 0.458 3.542 9 O -0.470 6.470 10 C -0.087 4.087 11 C 0.045 3.955 12 H 0.056 0.944 13 C -0.492 4.492 14 H 0.073 0.927 15 C 0.085 3.915 16 N -0.896 5.896 17 Si 0.867 3.133 18 H -0.273 1.273 19 H -0.261 1.261 20 H -0.290 1.290 21 C -0.041 4.041 22 C -0.100 4.100 23 C -0.126 4.126 24 C -0.147 4.147 25 C -0.124 4.124 26 C -0.137 4.137 27 C 0.127 3.873 28 N -0.488 5.488 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.263 0.737 39 H 0.121 0.879 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.797 -4.345 2.224 17.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.010 4.010 3 C -0.195 4.195 4 C -0.074 4.074 5 C -0.148 4.148 6 C 0.036 3.964 7 O -0.286 6.286 8 C 0.299 3.701 9 O -0.353 6.353 10 C -0.125 4.125 11 C 0.026 3.974 12 H 0.074 0.926 13 C -0.529 4.529 14 H 0.091 0.909 15 C -0.118 4.118 16 N -0.533 5.533 17 Si 0.695 3.305 18 H -0.198 1.198 19 H -0.186 1.186 20 H -0.217 1.217 21 C -0.042 4.042 22 C -0.118 4.118 23 C -0.144 4.144 24 C -0.165 4.165 25 C -0.142 4.142 26 C -0.155 4.155 27 C -0.031 4.031 28 N -0.198 5.198 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.073 0.927 39 H 0.139 0.861 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -16.897 -5.037 1.775 17.720 hybrid contribution 1.385 0.168 -0.413 1.455 sum -15.512 -4.869 1.362 16.315 Atomic orbital electron populations 1.20721 0.88801 1.03537 1.03070 1.21373 0.97113 0.88485 0.94001 1.21959 0.94671 0.99380 1.03525 1.21600 0.94392 0.98108 0.93301 1.20617 0.95605 0.94672 1.03866 1.21529 0.88636 1.03647 0.82542 1.86584 1.26526 1.85381 1.30091 1.23936 0.79196 0.73179 0.93752 1.90710 1.59385 1.42567 1.42650 1.21422 0.98036 1.03607 0.89395 1.18315 0.88801 1.00461 0.89841 0.92641 1.20626 1.05818 0.93604 1.32890 0.90859 1.24874 0.96611 0.95766 0.94502 1.69889 1.19202 1.25922 1.38249 0.86965 0.79830 0.85629 0.78087 1.19817 1.18594 1.21667 1.20649 0.95441 0.91943 0.96133 1.20965 1.00009 0.98497 0.92313 1.21063 0.98954 0.97547 0.96819 1.20880 1.01426 0.95344 0.98890 1.20959 1.00460 0.98861 0.93948 1.21048 1.00142 0.98187 0.96155 1.22702 0.89100 0.98079 0.93179 1.67584 1.09658 1.29329 1.13187 0.90378 0.90420 0.90654 0.84584 0.84333 0.90147 0.90328 0.89939 0.88535 0.92676 0.86128 0.87056 0.87310 0.87252 0.87303 0.82476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 10.17 36.01 0.37 -0.37 16 2 C 0.13 1.33 6.78 -82.59 -0.56 0.77 16 3 C -0.18 -1.69 9.74 -39.44 -0.38 -2.07 16 4 C -0.05 -0.53 9.86 -39.28 -0.39 -0.91 16 5 C -0.15 -1.79 5.54 -104.48 -0.58 -2.37 16 6 C 0.11 1.56 5.62 36.01 0.20 1.76 16 7 O -0.37 -6.09 10.20 -39.26 -0.40 -6.49 16 8 C 0.46 8.95 7.71 36.01 0.28 9.23 16 9 O -0.47 -10.92 14.73 -18.75 -0.28 -11.20 16 10 C -0.09 -1.61 5.04 -27.88 -0.14 -1.75 16 11 C 0.04 1.00 1.21 -92.93 -0.11 0.88 16 12 H 0.06 1.32 4.87 -51.93 -0.25 1.06 16 13 C -0.49 -13.19 6.98 -34.44 -0.24 -13.44 16 14 H 0.07 2.12 8.06 -52.49 -0.42 1.70 16 15 C 0.09 2.45 5.47 -17.82 -0.10 2.35 16 16 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 17 Si 0.87 22.09 26.61 -169.99 -4.52 17.57 16 18 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.26 -6.44 6.29 56.52 0.36 -6.08 16 20 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 21 C -0.04 -0.85 4.52 -104.62 -0.47 -1.32 16 22 C -0.10 -1.91 8.86 -39.58 -0.35 -2.26 16 23 C -0.13 -2.11 10.05 -39.59 -0.40 -2.51 16 24 C -0.15 -2.37 10.05 -39.58 -0.40 -2.77 16 25 C -0.12 -2.11 10.05 -39.58 -0.40 -2.51 16 26 C -0.14 -2.65 9.08 -39.59 -0.36 -3.01 16 27 C 0.13 1.52 10.86 -17.55 -0.19 1.33 16 28 N -0.49 -6.04 10.27 -9.47 -0.10 -6.13 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 33 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 35 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 36 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.10 1.68 7.69 -51.93 -0.40 1.28 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.12 2.26 7.71 -52.48 -0.40 1.85 16 40 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 41 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 42 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 43 H 0.11 2.04 7.91 -52.49 -0.42 1.62 16 44 H 0.16 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 375.43 15.07 5.66 5.66 Total: -1.00 -33.32 375.43 -9.23 -42.55 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.14 Total: 3.57 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -4.22 Total: -18.95 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.68 Total: -32.71 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.68 Total: -17.69 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.52 Total: 17.57 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.32 -9.23 -42.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796777678.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.366 kcal (2) G-P(sol) polarization free energy of solvation -33.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds