Wall clock time and date at job start Tue Mar 31 2020 13:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38218 * 119.62150 * 2 1 4 4 C 1.38631 * 119.16505 * 179.97438 * 3 2 1 5 5 C 1.38667 * 118.41669 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.41767 * 180.02562 * 5 4 3 7 7 O 1.45199 * 109.46718 * 90.00543 * 6 5 4 8 8 C 1.34231 * 116.99861 * 180.02562 * 7 6 5 9 9 O 1.20825 * 119.99935 * 359.97438 * 8 7 6 10 10 C 1.50708 * 120.00150 * 179.97438 * 8 7 6 11 11 C 1.52996 * 109.46908 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.47262 * 304.99977 * 11 10 8 13 13 C 1.50697 * 109.47253 * 65.00194 * 11 10 8 14 14 H 1.07997 * 120.00438 * 26.93969 * 13 11 10 15 15 C 1.37882 * 119.99838 * 206.93733 * 13 11 10 16 16 N 1.31515 * 119.99950 * 186.61656 * 15 13 11 17 17 Si 1.86800 * 119.99904 * 6.89639 * 15 13 11 18 18 H 1.48506 * 109.47129 * 274.24829 * 17 15 13 19 19 H 1.48500 * 109.47565 * 34.24890 * 17 15 13 20 20 H 1.48504 * 109.47137 * 154.25109 * 17 15 13 21 21 C 1.50702 * 109.46850 * 185.00273 * 11 10 8 22 22 C 1.38239 * 119.99938 * 297.93536 * 21 11 10 23 23 C 1.38233 * 120.00026 * 179.78971 * 22 21 11 24 24 C 1.38230 * 119.99954 * 0.43738 * 23 22 21 25 25 C 1.38239 * 120.00054 * 359.81860 * 24 23 22 26 26 C 1.38233 * 120.00197 * 118.21398 * 21 11 10 27 27 C 1.38181 * 119.16515 * 0.27711 * 5 4 3 28 28 N 1.31862 * 119.61500 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47446 * 89.99804 * 1 2 3 30 30 H 1.08994 * 109.47159 * 210.00176 * 1 2 3 31 31 H 1.09004 * 109.46791 * 330.00073 * 1 2 3 32 32 H 1.08007 * 120.42315 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.79269 * 179.97438 * 4 3 2 34 34 H 1.09003 * 109.47178 * 330.00280 * 6 5 4 35 35 H 1.09001 * 109.47264 * 209.99875 * 6 5 4 36 36 H 1.08993 * 109.46654 * 59.99919 * 10 8 7 37 37 H 1.08996 * 109.47027 * 300.00103 * 10 8 7 38 38 H 0.97001 * 119.99552 * 180.27438 * 16 15 13 39 39 H 1.08004 * 119.99421 * 0.02562 * 22 21 11 40 40 H 1.08005 * 120.00039 * 180.27989 * 23 22 21 41 41 H 1.08005 * 120.00375 * 179.83526 * 24 23 22 42 42 H 1.08004 * 119.99592 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.00232 * 359.97388 * 26 21 11 44 44 H 1.08006 * 119.62037 * 179.70230 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2015 0.0000 4 6 3.5764 1.1905 0.0005 5 6 4.2266 -0.0343 0.0016 6 6 5.7322 -0.0989 0.0028 7 8 6.2146 -0.1192 1.3722 8 6 7.5440 -0.1756 1.5492 9 8 8.2801 -0.2076 0.5916 10 6 8.1184 -0.1992 2.9423 11 6 9.6450 -0.2636 2.8634 12 1 9.9417 -1.1189 2.2564 13 6 10.1695 1.0029 2.2373 14 1 9.6050 1.9199 2.3195 15 6 11.3702 0.9908 1.5596 16 7 11.8919 2.1175 1.1260 17 14 12.2520 -0.6267 1.2503 18 1 13.0935 -0.9644 2.4264 19 1 11.2515 -1.7022 1.0324 20 1 13.1121 -0.4993 0.0465 21 6 10.2139 -0.4109 4.2511 22 6 10.0052 0.5797 5.1925 23 6 10.5233 0.4425 6.4667 24 6 11.2577 -0.6810 6.7969 25 6 11.4709 -1.6692 5.8540 26 6 10.9492 -1.5340 4.5811 27 6 3.4766 -1.1948 -0.0037 28 7 2.1586 -1.1464 0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6509 2.1373 -0.0004 33 1 4.1367 2.1138 0.0001 34 1 6.1338 0.7745 -0.5111 35 1 6.0575 -1.0039 -0.5103 36 1 7.7445 -1.0737 3.4746 37 1 7.8202 0.7046 3.4736 38 1 12.7346 2.1086 0.6457 39 1 9.4341 1.4590 4.9334 40 1 10.3564 1.2144 7.2035 41 1 11.6648 -0.7870 7.7917 42 1 12.0451 -2.5468 6.1120 43 1 11.1157 -2.3060 3.8445 44 1 3.9754 -2.1528 -0.0078 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796777678.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:26 Heat of formation + Delta-G solvation = -51.058133 kcal Electronic energy + Delta-G solvation = -26149.490840 eV Core-core repulsion = 22416.753890 eV Total energy + Delta-G solvation = -3732.736950 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.64406 -41.07316 -40.01636 -37.68655 -35.92091 -34.63253 -33.78903 -33.31948 -31.62578 -30.88376 -29.96742 -28.11914 -26.30181 -24.62451 -24.35489 -23.33537 -22.56926 -22.12447 -20.87277 -19.10832 -18.63044 -17.96205 -17.79772 -17.39981 -17.04702 -16.80464 -16.37385 -15.98120 -15.63178 -15.51462 -15.33848 -14.84565 -14.60090 -14.39432 -14.11200 -14.06840 -13.94220 -13.75278 -13.62726 -13.38645 -13.19152 -13.04759 -12.92459 -12.77648 -12.61695 -12.14163 -11.91677 -11.86037 -11.70053 -11.56377 -11.31305 -11.07687 -10.85483 -10.69611 -10.49811 -9.90185 -9.63402 -9.34317 -8.26764 -6.24308 -0.09512 0.23880 0.66636 0.70885 1.29658 1.33151 1.40026 1.42192 1.84792 2.36219 2.78313 3.04391 3.18805 3.28638 3.62698 3.69914 3.86099 3.90321 4.05345 4.09263 4.24490 4.26685 4.30314 4.37003 4.37236 4.47029 4.52709 4.58815 4.69524 4.77589 4.78988 4.80877 4.83882 4.95369 5.10594 5.15827 5.16200 5.25074 5.33808 5.37299 5.49462 5.62424 5.69572 5.75457 5.79767 5.99278 6.29109 6.33323 6.74791 6.92767 6.98470 7.38846 8.89952 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015130 B = 0.002877 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.241416 B = 9729.814835 C =10695.526702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.120 3.880 3 C -0.171 4.171 4 C -0.056 4.056 5 C -0.161 4.161 6 C 0.111 3.889 7 O -0.360 6.360 8 C 0.462 3.538 9 O -0.516 6.516 10 C -0.086 4.086 11 C 0.048 3.952 12 H 0.041 0.959 13 C -0.473 4.473 14 H 0.038 0.962 15 C 0.026 3.974 16 N -0.948 5.948 17 Si 0.916 3.084 18 H -0.260 1.260 19 H -0.252 1.252 20 H -0.297 1.297 21 C -0.065 4.065 22 C -0.118 4.118 23 C -0.125 4.125 24 C -0.139 4.139 25 C -0.124 4.124 26 C -0.155 4.155 27 C 0.118 3.882 28 N -0.510 5.510 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.169 0.831 33 H 0.148 0.852 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.261 0.739 39 H 0.113 0.887 40 H 0.140 0.860 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.109 0.891 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.195 -5.460 4.531 19.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.017 4.017 3 C -0.190 4.190 4 C -0.082 4.082 5 C -0.163 4.163 6 C 0.036 3.964 7 O -0.278 6.278 8 C 0.306 3.694 9 O -0.403 6.403 10 C -0.123 4.123 11 C 0.029 3.971 12 H 0.059 0.941 13 C -0.510 4.510 14 H 0.057 0.943 15 C -0.171 4.171 16 N -0.589 5.589 17 Si 0.743 3.257 18 H -0.184 1.184 19 H -0.177 1.177 20 H -0.224 1.224 21 C -0.066 4.066 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.157 4.157 25 C -0.142 4.142 26 C -0.173 4.173 27 C -0.039 4.039 28 N -0.220 5.220 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.186 0.814 33 H 0.166 0.834 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.135 0.865 37 H 0.125 0.875 38 H 0.070 0.930 39 H 0.131 0.869 40 H 0.158 0.842 41 H 0.165 0.835 42 H 0.158 0.842 43 H 0.127 0.873 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -18.337 -6.176 4.112 19.781 hybrid contribution 1.626 0.549 -1.033 2.003 sum -16.711 -5.626 3.078 17.900 Atomic orbital electron populations 1.20830 0.86347 1.04560 1.04183 1.22027 0.98835 0.88254 0.92609 1.22301 0.94068 1.00551 1.02106 1.21849 0.95404 0.97969 0.92995 1.20490 0.94215 0.95655 1.05923 1.21675 0.90048 1.03598 0.81035 1.86561 1.24764 1.84600 1.31887 1.24121 0.79795 0.71897 0.93610 1.90694 1.60612 1.44935 1.44017 1.21400 0.95797 1.05684 0.89418 1.18167 0.91079 0.97145 0.90712 0.94124 1.20836 1.04478 0.94208 1.31512 0.94341 1.25582 0.97983 0.98300 0.95236 1.70025 1.20099 1.27920 1.40868 0.86168 0.78992 0.82593 0.77978 1.18430 1.17665 1.22389 1.20408 0.97099 0.93675 0.95379 1.21043 1.00986 0.98072 0.93502 1.21414 0.97994 0.98634 0.96196 1.21358 0.99812 0.94154 1.00336 1.21343 0.99806 1.00159 0.92910 1.21203 1.00476 0.97973 0.97618 1.22863 0.89371 0.98427 0.93205 1.67647 1.09637 1.30565 1.14176 0.89070 0.90733 0.88316 0.81370 0.83401 0.90847 0.89898 0.86497 0.87506 0.93043 0.86911 0.84179 0.83519 0.84169 0.87305 0.81647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.18 10.17 71.24 0.72 -0.46 16 2 C 0.12 2.29 6.78 42.55 0.29 2.58 16 3 C -0.17 -2.93 9.74 22.36 0.22 -2.71 16 4 C -0.06 -1.19 9.86 22.47 0.22 -0.97 16 5 C -0.16 -3.94 5.54 -19.77 -0.11 -4.05 16 6 C 0.11 3.18 5.62 71.24 0.40 3.58 16 7 O -0.36 -12.06 10.20 -51.42 -0.52 -12.58 16 8 C 0.46 18.40 7.71 71.24 0.55 18.95 16 9 O -0.52 -24.83 14.73 21.97 0.32 -24.50 16 10 C -0.09 -3.17 5.04 29.85 0.15 -3.02 16 11 C 0.05 2.15 1.21 -12.29 -0.01 2.14 16 12 H 0.04 1.94 4.87 -2.39 -0.01 1.93 16 13 C -0.47 -26.26 6.98 25.60 0.18 -26.08 16 14 H 0.04 2.34 8.06 -2.91 -0.02 2.32 16 15 C 0.03 1.55 5.47 84.66 0.46 2.01 16 16 N -0.95 -60.53 13.96 21.45 0.30 -60.23 16 17 Si 0.92 46.62 26.61 68.60 1.83 48.45 16 18 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.25 -12.30 6.29 99.48 0.63 -11.67 16 20 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 21 C -0.07 -2.63 4.52 -19.86 -0.09 -2.72 16 22 C -0.12 -4.39 8.86 22.27 0.20 -4.19 16 23 C -0.12 -3.80 10.05 22.27 0.22 -3.57 16 24 C -0.14 -3.86 10.05 22.27 0.22 -3.64 16 25 C -0.12 -3.77 10.05 22.27 0.22 -3.54 16 26 C -0.15 -5.68 9.08 22.27 0.20 -5.48 16 27 C 0.12 2.82 10.86 84.67 0.92 3.74 16 28 N -0.51 -12.19 10.27 -183.88 -1.89 -14.08 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.10 0.68 8.08 -2.39 -0.02 0.66 16 32 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 33 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.07 2.20 8.09 -2.39 -0.02 2.18 16 35 H 0.08 2.28 8.08 -2.39 -0.02 2.27 16 36 H 0.12 3.51 8.14 -2.39 -0.02 3.49 16 37 H 0.11 3.72 7.69 -2.39 -0.02 3.71 16 38 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 39 H 0.11 4.25 7.71 -2.91 -0.02 4.22 16 40 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 41 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 42 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 43 H 0.11 3.91 7.91 -2.91 -0.02 3.88 16 44 H 0.17 3.42 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -75.35 375.43 5.92 -69.43 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.91 Total: 20.96 kcal Atomic # 6 Polarization: -32.40 SS G_CDS: 4.97 Total: -27.43 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -1.59 Total: -74.31 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -0.20 Total: -37.09 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.83 Total: 48.45 kcal Total: -75.35 5.92 -69.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796777678.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.372 kcal (2) G-P(sol) polarization free energy of solvation -75.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds