Wall clock time and date at job start Tue Mar 31 2020 14:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47122 * 2 1 4 4 C 1.53002 * 109.46865 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46676 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46934 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47421 * 54.99805 * 6 5 4 8 8 C 1.53005 * 109.47147 * 175.00278 * 6 5 4 9 9 N 1.46507 * 109.46844 * 294.99917 * 6 5 4 10 10 S 1.65600 * 119.99911 * 144.00473 * 9 6 5 11 11 O 1.42095 * 106.40013 * 312.09228 * 10 9 6 12 12 O 1.42102 * 106.40114 * 179.17204 * 10 9 6 13 13 C 1.76200 * 107.21665 * 65.63272 * 10 9 6 14 14 C 1.37638 * 120.12688 * 243.91266 * 13 10 9 15 15 C 1.38615 * 120.24741 * 180.32244 * 14 13 10 16 16 C 1.38658 * 120.49910 * 359.67137 * 15 14 13 17 17 C 1.37593 * 120.25077 * 359.97438 * 16 15 14 18 18 C 1.40691 * 120.13041 * 63.60795 * 13 10 9 19 19 C 1.41403 * 120.24318 * 359.97438 * 18 13 10 20 20 H 1.07996 * 119.99902 * 30.10056 * 19 18 13 21 21 C 1.39945 * 119.99809 * 210.10811 * 19 18 13 22 22 N 1.30827 * 119.99761 * 192.78493 * 21 19 18 23 23 Si 1.86797 * 120.00337 * 12.78401 * 21 19 18 24 24 H 1.48500 * 109.46910 * 266.89997 * 23 21 19 25 25 H 1.48498 * 109.47170 * 26.89597 * 23 21 19 26 26 H 1.48495 * 109.47303 * 146.90073 * 23 21 19 27 27 H 1.08997 * 109.46831 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46819 * 300.00274 * 1 2 3 29 29 H 1.08997 * 109.46478 * 60.00417 * 1 2 3 30 30 H 1.08996 * 109.47274 * 239.99692 * 2 1 3 31 31 H 1.09004 * 109.46724 * 119.99234 * 2 1 3 32 32 H 1.08996 * 109.47297 * 59.99707 * 3 2 1 33 33 H 1.09004 * 109.46695 * 299.99252 * 3 2 1 34 34 H 1.08996 * 109.47193 * 59.99899 * 4 3 2 35 35 H 1.08997 * 109.46816 * 299.99632 * 4 3 2 36 36 H 1.08996 * 109.47169 * 60.00157 * 5 4 3 37 37 H 1.08997 * 109.47421 * 299.99535 * 5 4 3 38 38 H 1.08998 * 109.47347 * 59.99481 * 8 6 5 39 39 H 1.09003 * 109.46744 * 179.97438 * 8 6 5 40 40 H 1.08993 * 109.46573 * 299.99348 * 8 6 5 41 41 H 0.97005 * 119.99836 * 324.00448 * 9 6 5 42 42 H 1.08007 * 119.88045 * 0.02562 * 14 13 10 43 43 H 1.08002 * 119.75180 * 179.68928 * 15 14 13 44 44 H 1.08008 * 119.87249 * 180.02562 * 16 15 14 45 45 H 1.07994 * 120.12836 * 180.02562 * 17 16 15 46 46 H 0.96998 * 120.00208 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6101 2.8850 0.0000 7 1 5.9735 2.2951 -0.8415 8 6 6.1201 4.3220 -0.1263 9 7 6.0984 2.3018 1.2522 10 16 7.4683 1.3714 1.2534 11 8 7.3245 0.4441 0.1864 12 8 7.6847 0.9777 2.6015 13 6 8.8137 2.4235 0.8202 14 6 9.5166 2.2030 -0.3424 15 6 10.5796 3.0251 -0.6823 16 6 10.9430 4.0814 0.1392 17 6 10.2500 4.3249 1.3027 18 6 9.1696 3.4962 1.6582 19 6 8.4503 3.7366 2.8516 20 1 7.9931 2.9142 3.3816 21 6 8.3307 5.0404 3.3459 22 7 7.8906 5.2413 4.5614 23 14 8.7996 6.4938 2.2702 24 1 10.2151 6.8627 2.5261 25 1 8.6346 6.1255 0.8411 26 1 7.9219 7.6486 2.5884 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6768 1.9563 -0.8901 34 1 3.9338 0.9285 -0.8891 35 1 3.9330 0.9288 0.8909 36 1 3.7164 3.3993 0.8895 37 1 3.7172 3.3983 -0.8904 38 1 5.7567 4.9118 0.7152 39 1 7.2102 4.3219 -0.1258 40 1 5.7569 4.7558 -1.0579 41 1 5.6192 2.4607 2.0805 42 1 9.2419 1.3835 -0.9900 43 1 11.1288 2.8417 -1.5940 44 1 11.7728 4.7159 -0.1356 45 1 10.5344 5.1484 1.9408 46 1 7.8073 6.1450 4.9040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798225650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:42 Heat of formation + Delta-G solvation = -94.718586 kcal Electronic energy + Delta-G solvation = -26793.647455 eV Core-core repulsion = 23194.461196 eV Total energy + Delta-G solvation = -3599.186258 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -37.94048 -37.39619 -36.26214 -35.18883 -34.90576 -33.86589 -31.44352 -30.72327 -30.16028 -29.29617 -26.25949 -25.41657 -22.41675 -22.05653 -21.21599 -20.91495 -20.60676 -18.76643 -17.75314 -17.12363 -16.42627 -15.85446 -15.42664 -15.37167 -14.48317 -14.22798 -14.11374 -13.85251 -13.72430 -13.58814 -13.44656 -12.92905 -12.86440 -12.63532 -12.43063 -12.02016 -11.92969 -11.78334 -11.51149 -11.35305 -11.26332 -11.18492 -11.09610 -11.06883 -10.96705 -10.76560 -10.71350 -10.67930 -10.40108 -10.35543 -10.19236 -9.98483 -9.53405 -9.35154 -8.79028 -8.22509 -7.85359 -7.21067 -4.89981 1.51262 2.06500 2.50529 2.91969 3.01614 3.10644 3.73423 3.90622 4.23138 4.64530 4.70642 4.89931 5.02217 5.08986 5.18600 5.26307 5.30993 5.49526 5.53591 5.67832 5.69771 5.72497 5.80657 5.82095 5.87472 5.92848 5.99962 6.04289 6.06128 6.08312 6.18877 6.23094 6.29743 6.35462 6.39197 6.51169 6.61258 6.72040 6.81803 6.93451 7.06899 7.23163 7.40638 7.53748 7.70615 7.81560 8.14227 8.29487 8.50932 9.77184 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014359 B = 0.004503 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.557834 B = 6217.212096 C = 6915.518984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.119 4.119 4 C -0.124 4.124 5 C -0.120 4.120 6 C 0.156 3.844 7 H 0.086 0.914 8 C -0.175 4.175 9 N -1.106 6.106 10 S 2.706 3.294 11 O -0.996 6.996 12 O -0.972 6.972 13 C -0.769 4.769 14 C 0.017 3.983 15 C -0.259 4.259 16 C -0.044 4.044 17 C -0.238 4.238 18 C 0.167 3.833 19 C -0.451 4.451 20 H 0.125 0.875 21 C 0.090 3.910 22 N -0.780 5.780 23 Si 0.907 3.093 24 H -0.269 1.269 25 H -0.236 1.236 26 H -0.288 1.288 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.414 0.586 42 H 0.113 0.887 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.053 -0.497 -8.045 12.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.157 4.157 4 C -0.161 4.161 5 C -0.159 4.159 6 C 0.048 3.952 7 H 0.104 0.896 8 C -0.234 4.234 9 N -0.863 5.863 10 S 2.802 3.198 11 O -0.987 6.987 12 O -0.963 6.963 13 C -0.863 4.863 14 C -0.003 4.003 15 C -0.280 4.280 16 C -0.062 4.062 17 C -0.257 4.257 18 C 0.162 3.838 19 C -0.477 4.477 20 H 0.143 0.857 21 C -0.133 4.133 22 N -0.402 5.402 23 Si 0.734 3.266 24 H -0.195 1.195 25 H -0.159 1.159 26 H -0.216 1.216 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.248 0.752 42 H 0.131 0.869 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.122 0.878 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.073 -1.322 -7.751 12.006 hybrid contribution 0.585 1.677 -0.040 1.777 sum -8.488 0.355 -7.791 11.527 Atomic orbital electron populations 1.21779 0.96247 1.01314 1.01588 1.21562 0.95451 0.97346 1.02186 1.21629 0.95877 0.96416 1.01740 1.21636 0.94594 0.96983 1.02897 1.21864 0.94504 0.97069 1.02499 1.20650 0.94062 0.94422 0.86069 0.89594 1.22388 1.03382 0.96319 1.01330 1.55459 1.44450 1.71041 1.15344 1.00923 0.73019 0.73049 0.72822 1.93452 1.86727 1.60650 1.57836 1.93524 1.85248 1.81718 1.35777 1.29892 1.25291 1.23281 1.07831 1.20396 0.92280 0.95058 0.92535 1.20490 1.03677 1.01433 1.02374 1.20818 0.96536 0.95368 0.93498 1.21192 1.00374 1.04345 0.99785 1.17047 0.88993 0.88110 0.89634 1.20303 1.27517 0.96163 1.03766 0.85715 1.26224 0.91632 1.00962 0.94510 1.69657 1.30957 1.25222 1.14353 0.86418 0.78331 0.78790 0.83087 1.19519 1.15944 1.21554 0.93028 0.92873 0.92953 0.92051 0.91964 0.92150 0.92284 0.91711 0.91533 0.91340 0.91147 0.92044 0.90802 0.92582 0.75200 0.86905 0.88167 0.88373 0.87777 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.13 -1.25 5.93 -26.73 -0.16 -1.41 16 3 C -0.12 -1.21 5.21 -26.73 -0.14 -1.35 16 4 C -0.12 -1.49 5.10 -26.73 -0.14 -1.63 16 5 C -0.12 -1.45 4.82 -26.73 -0.13 -1.58 16 6 C 0.16 2.34 2.92 -67.92 -0.20 2.14 16 7 H 0.09 1.31 7.48 -51.93 -0.39 0.92 16 8 C -0.18 -2.73 9.52 37.16 0.35 -2.38 16 9 N -1.11 -19.31 4.74 -4.88 -0.02 -19.33 16 10 S 2.71 57.45 5.04 -107.50 -0.54 56.91 16 11 O -1.00 -21.68 16.29 -57.17 -0.93 -22.61 16 12 O -0.97 -23.82 15.79 -57.17 -0.90 -24.73 16 13 C -0.77 -17.28 4.98 -38.87 -0.19 -17.47 16 14 C 0.02 0.36 9.53 -39.66 -0.38 -0.02 16 15 C -0.26 -5.17 10.05 -39.29 -0.39 -5.57 16 16 C -0.04 -0.89 10.02 -39.66 -0.40 -1.29 16 17 C -0.24 -5.40 6.99 -38.88 -0.27 -5.68 16 18 C 0.17 4.00 4.75 -106.82 -0.51 3.49 16 19 C -0.45 -11.28 8.68 -37.74 -0.33 -11.60 16 20 H 0.13 3.36 5.73 -52.49 -0.30 3.06 16 21 C 0.09 2.15 5.47 -17.34 -0.09 2.06 16 22 N -0.78 -19.09 13.93 55.55 0.77 -18.31 16 23 Si 0.91 18.94 24.39 -169.99 -4.15 14.79 16 24 H -0.27 -5.54 6.68 56.52 0.38 -5.16 16 25 H -0.24 -4.92 6.64 56.52 0.38 -4.55 16 26 H -0.29 -5.79 7.11 56.52 0.40 -5.39 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.88 7.75 -51.93 -0.40 0.48 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.35 6.72 -51.93 -0.35 1.00 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.41 6.79 8.85 -34.47 -0.31 6.49 16 42 H 0.11 2.17 7.33 -52.48 -0.38 1.79 16 43 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 44 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 45 H 0.10 2.33 4.35 -52.49 -0.23 2.10 16 46 H 0.29 6.39 8.30 -40.82 -0.34 6.06 16 LS Contribution 374.83 15.07 5.65 5.65 Total: -1.00 -28.69 374.83 -10.19 -38.89 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -7.46 Total: 11.94 kcal Atomic # 6 Polarization: -40.59 SS G_CDS: -2.61 Total: -43.19 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.75 Total: -37.64 kcal Atomic # 8 Polarization: -45.50 SS G_CDS: -1.83 Total: -47.34 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.15 Total: 14.79 kcal Atomic # 16 Polarization: 57.45 SS G_CDS: -0.54 Total: 56.91 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.69 -10.19 -38.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798225650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.833 kcal (2) G-P(sol) polarization free energy of solvation -28.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds