Wall clock time and date at job start Tue Mar 31 2020 14:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47122 * 2 1 4 4 C 1.53002 * 109.46865 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46676 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46934 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.47421 * 54.99805 * 6 5 4 8 8 C 1.53005 * 109.47147 * 175.00278 * 6 5 4 9 9 N 1.46507 * 109.46844 * 294.99917 * 6 5 4 10 10 S 1.65600 * 119.99911 * 144.00473 * 9 6 5 11 11 O 1.42095 * 106.40013 * 312.09228 * 10 9 6 12 12 O 1.42102 * 106.40114 * 179.17204 * 10 9 6 13 13 C 1.76200 * 107.21665 * 65.63272 * 10 9 6 14 14 C 1.37638 * 120.12688 * 243.91266 * 13 10 9 15 15 C 1.38615 * 120.24741 * 180.32244 * 14 13 10 16 16 C 1.38658 * 120.49910 * 359.67137 * 15 14 13 17 17 C 1.37593 * 120.25077 * 359.97438 * 16 15 14 18 18 C 1.40691 * 120.13041 * 63.60795 * 13 10 9 19 19 C 1.41403 * 120.24318 * 359.97438 * 18 13 10 20 20 H 1.07996 * 119.99902 * 30.10056 * 19 18 13 21 21 C 1.39945 * 119.99809 * 210.10811 * 19 18 13 22 22 N 1.30827 * 119.99761 * 192.78493 * 21 19 18 23 23 Si 1.86797 * 120.00337 * 12.78401 * 21 19 18 24 24 H 1.48500 * 109.46910 * 266.89997 * 23 21 19 25 25 H 1.48498 * 109.47170 * 26.89597 * 23 21 19 26 26 H 1.48495 * 109.47303 * 146.90073 * 23 21 19 27 27 H 1.08997 * 109.46831 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46819 * 300.00274 * 1 2 3 29 29 H 1.08997 * 109.46478 * 60.00417 * 1 2 3 30 30 H 1.08996 * 109.47274 * 239.99692 * 2 1 3 31 31 H 1.09004 * 109.46724 * 119.99234 * 2 1 3 32 32 H 1.08996 * 109.47297 * 59.99707 * 3 2 1 33 33 H 1.09004 * 109.46695 * 299.99252 * 3 2 1 34 34 H 1.08996 * 109.47193 * 59.99899 * 4 3 2 35 35 H 1.08997 * 109.46816 * 299.99632 * 4 3 2 36 36 H 1.08996 * 109.47169 * 60.00157 * 5 4 3 37 37 H 1.08997 * 109.47421 * 299.99535 * 5 4 3 38 38 H 1.08998 * 109.47347 * 59.99481 * 8 6 5 39 39 H 1.09003 * 109.46744 * 179.97438 * 8 6 5 40 40 H 1.08993 * 109.46573 * 299.99348 * 8 6 5 41 41 H 0.97005 * 119.99836 * 324.00448 * 9 6 5 42 42 H 1.08007 * 119.88045 * 0.02562 * 14 13 10 43 43 H 1.08002 * 119.75180 * 179.68928 * 15 14 13 44 44 H 1.08008 * 119.87249 * 180.02562 * 16 15 14 45 45 H 1.07994 * 120.12836 * 180.02562 * 17 16 15 46 46 H 0.96998 * 120.00208 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6101 2.8850 0.0000 7 1 5.9735 2.2951 -0.8415 8 6 6.1201 4.3220 -0.1263 9 7 6.0984 2.3018 1.2522 10 16 7.4683 1.3714 1.2534 11 8 7.3245 0.4441 0.1864 12 8 7.6847 0.9777 2.6015 13 6 8.8137 2.4235 0.8202 14 6 9.5166 2.2030 -0.3424 15 6 10.5796 3.0251 -0.6823 16 6 10.9430 4.0814 0.1392 17 6 10.2500 4.3249 1.3027 18 6 9.1696 3.4962 1.6582 19 6 8.4503 3.7366 2.8516 20 1 7.9931 2.9142 3.3816 21 6 8.3307 5.0404 3.3459 22 7 7.8906 5.2413 4.5614 23 14 8.7996 6.4938 2.2702 24 1 10.2151 6.8627 2.5261 25 1 8.6346 6.1255 0.8411 26 1 7.9219 7.6486 2.5884 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6768 1.9563 -0.8901 34 1 3.9338 0.9285 -0.8891 35 1 3.9330 0.9288 0.8909 36 1 3.7164 3.3993 0.8895 37 1 3.7172 3.3983 -0.8904 38 1 5.7567 4.9118 0.7152 39 1 7.2102 4.3219 -0.1258 40 1 5.7569 4.7558 -1.0579 41 1 5.6192 2.4607 2.0805 42 1 9.2419 1.3835 -0.9900 43 1 11.1288 2.8417 -1.5940 44 1 11.7728 4.7159 -0.1356 45 1 10.5344 5.1484 1.9408 46 1 7.8073 6.1450 4.9040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798225650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:41 Heat of formation + Delta-G solvation = -112.021413 kcal Electronic energy + Delta-G solvation = -26794.397762 eV Core-core repulsion = 23194.461196 eV Total energy + Delta-G solvation = -3599.936565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.63082 -38.58795 -37.98514 -36.70890 -36.15897 -35.61947 -32.60081 -32.32851 -31.83617 -30.53453 -27.20676 -27.15027 -23.79932 -23.33123 -22.93156 -21.83329 -21.68875 -20.37220 -19.53601 -18.74274 -18.08757 -17.19045 -17.05427 -16.49904 -16.00191 -15.85125 -15.51660 -15.21643 -15.03441 -14.89315 -14.57015 -14.45254 -14.17122 -13.93852 -13.70088 -13.55590 -13.20287 -13.08254 -13.03746 -12.92005 -12.80939 -12.67093 -12.49431 -12.41825 -12.34068 -12.15251 -11.96317 -11.69913 -11.65168 -11.62848 -11.31581 -11.28007 -11.23967 -11.01108 -10.22760 -9.88480 -9.58099 -8.98196 -6.73334 -0.15620 0.35903 0.79378 1.23972 1.36399 1.45959 2.05284 2.33358 2.51122 2.95578 3.35580 3.71409 3.79173 4.07190 4.12297 4.19885 4.23015 4.31174 4.34467 4.37806 4.53049 4.57741 4.65015 4.70808 4.77137 4.85024 4.86177 4.93242 4.98155 5.03012 5.12474 5.15494 5.16082 5.22114 5.29523 5.38681 5.41764 5.43057 5.52134 5.56178 5.59263 5.61798 5.70349 5.84286 6.08379 6.26218 6.33532 6.53534 6.69849 8.05950 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014359 B = 0.004503 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.557834 B = 6217.212096 C = 6915.518984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C -0.114 4.114 4 C -0.126 4.126 5 C -0.113 4.113 6 C 0.149 3.851 7 H 0.085 0.915 8 C -0.174 4.174 9 N -1.098 6.098 10 S 2.717 3.283 11 O -1.004 7.004 12 O -1.012 7.012 13 C -0.778 4.778 14 C 0.003 3.997 15 C -0.247 4.247 16 C -0.040 4.040 17 C -0.262 4.262 18 C 0.158 3.842 19 C -0.480 4.480 20 H 0.092 0.908 21 C 0.062 3.938 22 N -0.820 5.820 23 Si 0.953 3.047 24 H -0.263 1.263 25 H -0.235 1.235 26 H -0.277 1.277 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.055 0.945 39 H 0.045 0.955 40 H 0.086 0.914 41 H 0.418 0.582 42 H 0.129 0.871 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.105 0.895 46 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.131 0.661 -10.868 14.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C -0.151 4.151 4 C -0.163 4.163 5 C -0.152 4.152 6 C 0.043 3.957 7 H 0.104 0.896 8 C -0.233 4.233 9 N -0.857 5.857 10 S 2.813 3.187 11 O -0.994 6.994 12 O -1.003 7.003 13 C -0.871 4.871 14 C -0.017 4.017 15 C -0.267 4.267 16 C -0.058 4.058 17 C -0.281 4.281 18 C 0.153 3.847 19 C -0.508 4.508 20 H 0.110 0.890 21 C -0.158 4.158 22 N -0.444 5.444 23 Si 0.777 3.223 24 H -0.189 1.189 25 H -0.158 1.158 26 H -0.203 1.203 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.253 0.747 42 H 0.147 0.853 43 H 0.156 0.844 44 H 0.154 0.846 45 H 0.123 0.877 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.147 -0.174 -10.576 13.984 hybrid contribution 0.665 1.194 0.693 1.532 sum -8.482 1.019 -9.883 13.063 Atomic orbital electron populations 1.21758 0.95030 1.01847 1.02051 1.21585 0.96561 0.97069 1.01671 1.21585 0.94238 0.96800 1.02496 1.21645 0.96133 0.96744 1.01801 1.21838 0.91939 0.97393 1.03986 1.20924 0.96185 0.94004 0.84619 0.89648 1.22371 1.01537 0.96595 1.02763 1.55211 1.43009 1.70820 1.16661 1.00403 0.73440 0.73187 0.71693 1.93430 1.87008 1.61265 1.57683 1.93470 1.86105 1.82789 1.37933 1.30098 1.26014 1.22719 1.08295 1.20740 0.92677 0.95990 0.92274 1.20990 1.02533 1.00009 1.03129 1.21268 0.96746 0.95558 0.92256 1.21356 1.00742 1.04794 1.01235 1.17173 0.89261 0.88871 0.89404 1.20146 1.29524 0.96027 1.05064 0.89029 1.26789 0.91229 1.02492 0.95241 1.69681 1.32865 1.26242 1.15601 0.85708 0.78502 0.76487 0.81624 1.18871 1.15833 1.20335 0.92531 0.92738 0.92136 0.92126 0.93015 0.91964 0.90859 0.92101 0.93429 0.90937 0.88455 0.92555 0.93598 0.89495 0.74750 0.85292 0.84392 0.84579 0.87728 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 71.98 0.71 -1.57 16 2 C -0.13 -2.44 5.93 30.60 0.18 -2.26 16 3 C -0.11 -2.13 5.21 30.60 0.16 -1.97 16 4 C -0.13 -2.91 5.10 30.59 0.16 -2.76 16 5 C -0.11 -2.52 4.82 30.60 0.15 -2.38 16 6 C 0.15 4.36 2.92 44.99 0.13 4.49 16 7 H 0.09 2.51 7.48 -2.39 -0.02 2.49 16 8 C -0.17 -5.18 9.52 71.98 0.69 -4.50 16 9 N -1.10 -39.17 4.74 -169.36 -0.80 -39.97 16 10 S 2.72 118.22 5.04 -56.49 -0.28 117.94 16 11 O -1.00 -43.82 16.29 -128.00 -2.08 -45.91 16 12 O -1.01 -52.18 15.79 -128.00 -2.02 -54.20 16 13 C -0.78 -34.92 4.98 22.73 0.11 -34.81 16 14 C 0.00 0.11 9.53 22.22 0.21 0.33 16 15 C -0.25 -8.93 10.05 22.46 0.23 -8.70 16 16 C -0.04 -1.50 10.02 22.22 0.22 -1.28 16 17 C -0.26 -11.57 6.99 22.73 0.16 -11.41 16 18 C 0.16 7.59 4.75 -21.29 -0.10 7.48 16 19 C -0.48 -24.94 8.68 23.46 0.20 -24.74 16 20 H 0.09 5.28 5.73 -2.91 -0.02 5.26 16 21 C 0.06 3.03 5.47 85.26 0.47 3.49 16 22 N -0.82 -41.52 13.93 21.83 0.30 -41.22 16 23 Si 0.95 38.57 24.39 68.60 1.67 40.25 16 24 H -0.26 -10.27 6.68 99.48 0.66 -9.61 16 25 H -0.24 -9.38 6.64 99.48 0.66 -8.71 16 26 H -0.28 -10.52 7.11 99.48 0.71 -9.81 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 35 H 0.05 1.27 7.75 -2.39 -0.02 1.25 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.04 1.63 6.72 -2.39 -0.02 1.61 16 40 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.42 14.37 8.85 -96.74 -0.86 13.51 16 42 H 0.13 4.68 7.33 -2.91 -0.02 4.66 16 43 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 44 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 45 H 0.11 4.55 4.35 -2.91 -0.01 4.54 16 46 H 0.30 13.50 8.30 -92.71 -0.77 12.73 16 Total: -1.00 -63.10 374.83 0.48 -62.62 By element: Atomic # 1 Polarization: 41.04 SS G_CDS: 0.02 Total: 41.06 kcal Atomic # 6 Polarization: -84.25 SS G_CDS: 3.68 Total: -80.57 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -0.50 Total: -81.19 kcal Atomic # 8 Polarization: -96.00 SS G_CDS: -4.11 Total: -100.11 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 1.67 Total: 40.25 kcal Atomic # 16 Polarization: 118.22 SS G_CDS: -0.28 Total: 117.94 kcal Total: -63.10 0.48 -62.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798225650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.406 kcal (2) G-P(sol) polarization free energy of solvation -63.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds