Wall clock time and date at job start Tue Mar 31 2020 14:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46929 * 2 1 4 4 C 1.53001 * 109.46929 * 180.02562 * 3 2 1 5 5 C 1.53010 * 109.46595 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46595 * 179.97438 * 5 4 3 7 7 H 1.09008 * 109.47372 * 304.99798 * 6 5 4 8 8 C 1.53001 * 109.47129 * 185.00193 * 6 5 4 9 9 N 1.46499 * 109.47316 * 65.00071 * 6 5 4 10 10 S 1.65601 * 120.00205 * 213.49554 * 9 6 5 11 11 O 1.42104 * 106.40028 * 310.99716 * 10 9 6 12 12 O 1.42100 * 106.40447 * 178.07234 * 10 9 6 13 13 C 1.76198 * 107.21672 * 64.53267 * 10 9 6 14 14 C 1.37651 * 120.12885 * 245.46583 * 13 10 9 15 15 C 1.38608 * 120.24275 * 180.32033 * 14 13 10 16 16 C 1.38655 * 120.50716 * 359.67320 * 15 14 13 17 17 C 1.37591 * 120.24893 * 359.97438 * 16 15 14 18 18 C 1.40695 * 120.12737 * 65.16093 * 13 10 9 19 19 C 1.41393 * 120.24550 * 359.97438 * 18 13 10 20 20 H 1.08002 * 119.99704 * 335.32502 * 19 18 13 21 21 C 1.39946 * 120.00165 * 155.32986 * 19 18 13 22 22 N 1.30824 * 120.00053 * 335.07941 * 21 19 18 23 23 Si 1.86801 * 120.00011 * 155.08729 * 21 19 18 24 24 H 1.48494 * 109.46991 * 179.97438 * 23 21 19 25 25 H 1.48496 * 109.47147 * 299.99880 * 23 21 19 26 26 H 1.48500 * 109.47096 * 59.99757 * 23 21 19 27 27 H 1.09007 * 109.46637 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47559 * 300.00080 * 1 2 3 29 29 H 1.09000 * 109.47194 * 60.00251 * 1 2 3 30 30 H 1.08997 * 109.47559 * 239.99920 * 2 1 3 31 31 H 1.09000 * 109.47194 * 119.99749 * 2 1 3 32 32 H 1.08997 * 109.47066 * 59.99618 * 3 2 1 33 33 H 1.09000 * 109.46978 * 299.99881 * 3 2 1 34 34 H 1.08993 * 109.47109 * 60.00132 * 4 3 2 35 35 H 1.08994 * 109.46789 * 299.99619 * 4 3 2 36 36 H 1.08993 * 109.47072 * 60.00369 * 5 4 3 37 37 H 1.08994 * 109.47454 * 299.99473 * 5 4 3 38 38 H 1.08997 * 109.46926 * 59.99581 * 8 6 5 39 39 H 1.08997 * 109.47296 * 179.97438 * 8 6 5 40 40 H 1.09004 * 109.47070 * 300.00323 * 8 6 5 41 41 H 0.96998 * 119.99894 * 33.49812 * 9 6 5 42 42 H 1.07991 * 119.87460 * 0.02562 * 14 13 10 43 43 H 1.08006 * 119.74639 * 179.69187 * 15 14 13 44 44 H 1.08003 * 119.87619 * 180.02562 * 16 15 14 45 45 H 1.07996 * 120.13290 * 180.02562 * 17 16 15 46 46 H 0.97002 * 120.00010 * 354.10712 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8852 -0.0013 6 6 5.6099 2.8852 -0.0013 7 1 5.9733 2.2961 0.8409 8 6 6.1199 4.3222 0.1238 9 7 6.0982 2.3009 -1.2528 10 16 7.5018 1.4222 -1.2642 11 8 8.4706 2.2046 -0.5797 12 8 7.6758 0.9610 -2.5969 13 6 7.2288 -0.0095 -0.2740 14 6 7.9286 -0.1822 0.8987 15 6 7.7206 -1.3107 1.6761 16 6 6.8025 -2.2741 1.2869 17 6 6.0865 -2.1188 0.1222 18 6 6.2901 -0.9774 -0.6757 19 6 5.5604 -0.8074 -1.8747 20 1 5.4032 0.1832 -2.2753 21 6 5.0418 -1.9226 -2.5425 22 7 5.5961 -3.0968 -2.3828 23 14 3.5583 -1.7345 -3.6620 24 1 3.2085 -3.0542 -4.2460 25 1 2.4079 -1.2194 -2.8769 26 1 3.8797 -0.7801 -4.7534 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.9329 0.9289 -0.8908 35 1 3.9336 0.9286 0.8891 36 1 3.7169 3.3992 0.8887 37 1 3.7162 3.3987 -0.8913 38 1 5.7565 4.7569 1.0550 39 1 7.2099 4.3222 0.1243 40 1 5.7565 4.9114 -0.7182 41 1 5.5995 2.4288 -2.0748 42 1 8.6458 0.5621 1.2118 43 1 8.2776 -1.4405 2.5923 44 1 6.6482 -3.1493 1.9006 45 1 5.3716 -2.8702 -0.1790 46 1 6.4158 -3.1806 -1.8710 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798225651.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:46 Heat of formation + Delta-G solvation = -102.296546 kcal Electronic energy + Delta-G solvation = -27562.865962 eV Core-core repulsion = 23963.351099 eV Total energy + Delta-G solvation = -3599.514863 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -37.89827 -37.32334 -36.22980 -35.00663 -34.85043 -34.13382 -31.27421 -30.25481 -29.55362 -29.27853 -26.17101 -25.42501 -22.26046 -21.83427 -21.20352 -20.64937 -20.58051 -18.79541 -18.32467 -16.87972 -16.10329 -15.83286 -15.40400 -14.87811 -14.53489 -14.19558 -13.93739 -13.79059 -13.65317 -13.38278 -13.30571 -12.89688 -12.62058 -12.51423 -12.22649 -12.02845 -11.83395 -11.64377 -11.40083 -11.25873 -11.22892 -11.13437 -11.07334 -11.00185 -10.80992 -10.66561 -10.53551 -10.49208 -10.42528 -10.15274 -10.04897 -9.83629 -9.47941 -9.26362 -8.81188 -8.22249 -7.84381 -7.49736 -4.85125 1.52468 2.23986 2.64848 3.03184 3.14220 3.21107 3.82899 3.91259 4.31205 4.70174 4.84023 5.10693 5.18310 5.22297 5.31926 5.42460 5.44178 5.54742 5.60661 5.75083 5.79345 5.84634 5.90178 5.93028 6.03026 6.05382 6.08336 6.14133 6.21217 6.27903 6.30853 6.33760 6.50377 6.52297 6.58451 6.65532 6.74724 6.88347 6.91631 7.09175 7.28188 7.38230 7.48298 7.61648 7.65078 7.79624 7.96613 8.33857 8.55995 9.74157 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009026 B = 0.007302 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3101.364311 B = 3833.628005 C = 4949.063652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C -0.113 4.113 4 C -0.131 4.131 5 C -0.119 4.119 6 C 0.157 3.843 7 H 0.082 0.918 8 C -0.171 4.171 9 N -1.115 6.115 10 S 2.699 3.301 11 O -0.998 6.998 12 O -0.969 6.969 13 C -0.782 4.782 14 C 0.013 3.987 15 C -0.267 4.267 16 C -0.055 4.055 17 C -0.214 4.214 18 C 0.167 3.833 19 C -0.487 4.487 20 H 0.087 0.913 21 C 0.045 3.955 22 N -0.770 5.770 23 Si 1.052 2.948 24 H -0.270 1.270 25 H -0.263 1.263 26 H -0.268 1.268 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.410 0.590 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.111 0.889 46 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.756 7.433 3.544 11.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C -0.151 4.151 4 C -0.169 4.169 5 C -0.158 4.158 6 C 0.049 3.951 7 H 0.100 0.900 8 C -0.230 4.230 9 N -0.871 5.871 10 S 2.796 3.204 11 O -0.988 6.988 12 O -0.960 6.960 13 C -0.877 4.877 14 C -0.007 4.007 15 C -0.287 4.287 16 C -0.074 4.074 17 C -0.234 4.234 18 C 0.162 3.838 19 C -0.513 4.513 20 H 0.105 0.895 21 C -0.180 4.180 22 N -0.392 5.392 23 Si 0.874 3.126 24 H -0.195 1.195 25 H -0.188 1.188 26 H -0.193 1.193 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.243 0.757 42 H 0.126 0.874 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.129 0.871 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.899 6.773 2.300 10.656 hybrid contribution 0.544 0.253 1.267 1.402 sum -7.355 7.026 3.567 10.779 Atomic orbital electron populations 1.21770 0.96627 1.01193 1.01125 1.21605 0.94981 0.97332 1.02992 1.21556 0.96099 0.96475 1.00937 1.21766 0.94477 0.96095 1.04535 1.21864 0.94068 0.97935 1.01938 1.20617 0.94512 0.93884 0.86065 0.89988 1.22348 1.02757 0.96470 1.01444 1.55748 1.45930 1.69755 1.15697 1.01113 0.72058 0.73446 0.73734 1.93445 1.58574 1.70293 1.76537 1.93540 1.84636 1.81536 1.36254 1.29778 1.17532 1.23654 1.16771 1.20315 0.93552 0.95423 0.91361 1.20420 1.07267 0.98462 1.02557 1.20812 0.94695 0.96467 0.95402 1.21334 1.04132 1.01113 0.96777 1.16923 0.86195 0.89566 0.91074 1.20861 1.27760 0.97608 1.05111 0.89486 1.27075 1.01874 0.91264 0.97818 1.70447 1.16158 1.25797 1.26777 0.83847 0.74472 0.77877 0.76384 1.19482 1.18847 1.19326 0.93090 0.93282 0.93084 0.91094 0.92111 0.92924 0.92584 0.89363 0.91920 0.91534 0.91750 0.92165 0.91199 0.92537 0.75706 0.87426 0.88697 0.88793 0.87058 0.88083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.16 0.37 -1.36 16 2 C -0.13 -1.82 5.93 -26.73 -0.16 -1.98 16 3 C -0.11 -1.46 5.21 -26.73 -0.14 -1.60 16 4 C -0.13 -1.94 5.10 -26.73 -0.14 -2.07 16 5 C -0.12 -1.51 4.80 -26.73 -0.13 -1.64 16 6 C 0.16 2.31 2.77 -67.93 -0.19 2.13 16 7 H 0.08 1.31 7.82 -51.92 -0.41 0.90 16 8 C -0.17 -2.24 9.52 37.16 0.35 -1.89 16 9 N -1.12 -18.91 4.10 -4.89 -0.02 -18.93 16 10 S 2.70 57.96 4.88 -107.50 -0.52 57.44 16 11 O -1.00 -22.37 16.08 -57.17 -0.92 -23.29 16 12 O -0.97 -23.94 16.48 -57.17 -0.94 -24.88 16 13 C -0.78 -17.99 5.75 -38.87 -0.22 -18.21 16 14 C 0.01 0.30 9.54 -39.66 -0.38 -0.08 16 15 C -0.27 -5.65 10.05 -39.29 -0.39 -6.04 16 16 C -0.05 -1.18 10.02 -39.66 -0.40 -1.58 16 17 C -0.21 -4.99 7.93 -38.87 -0.31 -5.30 16 18 C 0.17 4.01 5.33 -106.82 -0.57 3.44 16 19 C -0.49 -11.48 6.55 -37.74 -0.25 -11.73 16 20 H 0.09 1.94 5.12 -52.49 -0.27 1.67 16 21 C 0.05 1.05 4.96 -17.34 -0.09 0.97 16 22 N -0.77 -19.02 12.28 55.55 0.68 -18.33 16 23 Si 1.05 19.80 30.00 -169.99 -5.10 14.71 16 24 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 25 H -0.26 -4.49 6.24 56.52 0.35 -4.14 16 26 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 27 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 1.11 7.28 -51.93 -0.38 0.73 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.49 5.94 -51.93 -0.31 1.18 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 1.04 7.48 -51.93 -0.39 0.66 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.41 6.23 8.58 -34.47 -0.30 5.93 16 42 H 0.11 2.22 7.32 -52.49 -0.38 1.83 16 43 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 44 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 45 H 0.11 2.63 6.38 -52.49 -0.33 2.30 16 46 H 0.30 7.78 6.59 -40.82 -0.27 7.52 16 LS Contribution 375.84 15.07 5.66 5.66 Total: -1.00 -28.43 375.84 -11.17 -39.59 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -7.37 Total: 14.98 kcal Atomic # 6 Polarization: -44.31 SS G_CDS: -2.63 Total: -46.95 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.66 Total: -37.26 kcal Atomic # 8 Polarization: -46.31 SS G_CDS: -1.86 Total: -48.17 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.10 Total: 14.71 kcal Atomic # 16 Polarization: 57.96 SS G_CDS: -0.52 Total: 57.44 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.43 -11.17 -39.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798225651.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.703 kcal (2) G-P(sol) polarization free energy of solvation -28.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds