Wall clock time and date at job start Tue Mar 31 2020 14:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46929 * 2 1 4 4 C 1.53001 * 109.46929 * 180.02562 * 3 2 1 5 5 C 1.53010 * 109.46595 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46595 * 179.97438 * 5 4 3 7 7 H 1.09008 * 109.47372 * 304.99798 * 6 5 4 8 8 C 1.53001 * 109.47129 * 185.00193 * 6 5 4 9 9 N 1.46499 * 109.47316 * 65.00071 * 6 5 4 10 10 S 1.65601 * 120.00205 * 213.49554 * 9 6 5 11 11 O 1.42104 * 106.40028 * 310.99716 * 10 9 6 12 12 O 1.42100 * 106.40447 * 178.07234 * 10 9 6 13 13 C 1.76198 * 107.21672 * 64.53267 * 10 9 6 14 14 C 1.37651 * 120.12885 * 245.46583 * 13 10 9 15 15 C 1.38608 * 120.24275 * 180.32033 * 14 13 10 16 16 C 1.38655 * 120.50716 * 359.67320 * 15 14 13 17 17 C 1.37591 * 120.24893 * 359.97438 * 16 15 14 18 18 C 1.40695 * 120.12737 * 65.16093 * 13 10 9 19 19 C 1.41393 * 120.24550 * 359.97438 * 18 13 10 20 20 H 1.08002 * 119.99704 * 335.32502 * 19 18 13 21 21 C 1.39946 * 120.00165 * 155.32986 * 19 18 13 22 22 N 1.30824 * 120.00053 * 335.07941 * 21 19 18 23 23 Si 1.86801 * 120.00011 * 155.08729 * 21 19 18 24 24 H 1.48494 * 109.46991 * 179.97438 * 23 21 19 25 25 H 1.48496 * 109.47147 * 299.99880 * 23 21 19 26 26 H 1.48500 * 109.47096 * 59.99757 * 23 21 19 27 27 H 1.09007 * 109.46637 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47559 * 300.00080 * 1 2 3 29 29 H 1.09000 * 109.47194 * 60.00251 * 1 2 3 30 30 H 1.08997 * 109.47559 * 239.99920 * 2 1 3 31 31 H 1.09000 * 109.47194 * 119.99749 * 2 1 3 32 32 H 1.08997 * 109.47066 * 59.99618 * 3 2 1 33 33 H 1.09000 * 109.46978 * 299.99881 * 3 2 1 34 34 H 1.08993 * 109.47109 * 60.00132 * 4 3 2 35 35 H 1.08994 * 109.46789 * 299.99619 * 4 3 2 36 36 H 1.08993 * 109.47072 * 60.00369 * 5 4 3 37 37 H 1.08994 * 109.47454 * 299.99473 * 5 4 3 38 38 H 1.08997 * 109.46926 * 59.99581 * 8 6 5 39 39 H 1.08997 * 109.47296 * 179.97438 * 8 6 5 40 40 H 1.09004 * 109.47070 * 300.00323 * 8 6 5 41 41 H 0.96998 * 119.99894 * 33.49812 * 9 6 5 42 42 H 1.07991 * 119.87460 * 0.02562 * 14 13 10 43 43 H 1.08006 * 119.74639 * 179.69187 * 15 14 13 44 44 H 1.08003 * 119.87619 * 180.02562 * 16 15 14 45 45 H 1.07996 * 120.13290 * 180.02562 * 17 16 15 46 46 H 0.97002 * 120.00010 * 354.10712 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8852 -0.0013 6 6 5.6099 2.8852 -0.0013 7 1 5.9733 2.2961 0.8409 8 6 6.1199 4.3222 0.1238 9 7 6.0982 2.3009 -1.2528 10 16 7.5018 1.4222 -1.2642 11 8 8.4706 2.2046 -0.5797 12 8 7.6758 0.9610 -2.5969 13 6 7.2288 -0.0095 -0.2740 14 6 7.9286 -0.1822 0.8987 15 6 7.7206 -1.3107 1.6761 16 6 6.8025 -2.2741 1.2869 17 6 6.0865 -2.1188 0.1222 18 6 6.2901 -0.9774 -0.6757 19 6 5.5604 -0.8074 -1.8747 20 1 5.4032 0.1832 -2.2753 21 6 5.0418 -1.9226 -2.5425 22 7 5.5961 -3.0968 -2.3828 23 14 3.5583 -1.7345 -3.6620 24 1 3.2085 -3.0542 -4.2460 25 1 2.4079 -1.2194 -2.8769 26 1 3.8797 -0.7801 -4.7534 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.9329 0.9289 -0.8908 35 1 3.9336 0.9286 0.8891 36 1 3.7169 3.3992 0.8887 37 1 3.7162 3.3987 -0.8913 38 1 5.7565 4.7569 1.0550 39 1 7.2099 4.3222 0.1243 40 1 5.7565 4.9114 -0.7182 41 1 5.5995 2.4288 -2.0748 42 1 8.6458 0.5621 1.2118 43 1 8.2776 -1.4405 2.5923 44 1 6.6482 -3.1493 1.9006 45 1 5.3716 -2.8702 -0.1790 46 1 6.4158 -3.1806 -1.8710 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798225651.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:45 Heat of formation + Delta-G solvation = -117.992875 kcal Electronic energy + Delta-G solvation = -27563.546606 eV Core-core repulsion = 23963.351099 eV Total energy + Delta-G solvation = -3600.195507 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.62993 -38.56803 -37.99338 -36.68393 -36.11796 -35.89828 -32.44115 -32.00566 -31.24848 -30.54305 -27.22052 -27.14333 -23.57953 -23.37491 -22.94941 -21.80032 -21.67594 -20.44479 -20.05690 -18.52584 -17.81423 -17.26279 -16.70561 -16.54776 -16.01389 -15.73515 -15.48776 -15.15443 -14.96509 -14.85758 -14.49031 -14.29355 -13.95773 -13.93087 -13.74728 -13.36899 -13.22517 -13.03584 -12.93562 -12.84285 -12.78086 -12.73635 -12.43406 -12.38917 -12.24963 -12.06905 -11.91749 -11.61991 -11.60554 -11.56155 -11.37210 -11.16929 -11.05029 -10.95652 -10.22832 -9.99049 -9.63653 -9.32005 -6.67053 -0.16301 0.45805 0.89442 1.47569 1.61707 1.73574 2.26913 2.33923 2.57805 2.97430 3.36940 3.72755 3.84509 4.11655 4.13646 4.22990 4.24842 4.34110 4.37159 4.38456 4.54072 4.59089 4.65313 4.81060 4.85671 4.87833 4.88557 5.00588 5.03834 5.10654 5.14789 5.17883 5.19840 5.29794 5.35199 5.42880 5.45051 5.50862 5.51797 5.61610 5.63662 5.67613 5.76158 5.86953 6.00084 6.17930 6.29666 6.56299 6.78419 7.88695 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009026 B = 0.007302 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3101.364311 B = 3833.628005 C = 4949.063652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C -0.107 4.107 4 C -0.132 4.132 5 C -0.110 4.110 6 C 0.149 3.851 7 H 0.065 0.935 8 C -0.168 4.168 9 N -1.103 6.103 10 S 2.716 3.284 11 O -1.009 7.009 12 O -1.006 7.006 13 C -0.797 4.797 14 C -0.001 4.001 15 C -0.265 4.265 16 C -0.055 4.055 17 C -0.235 4.235 18 C 0.152 3.848 19 C -0.504 4.504 20 H 0.093 0.907 21 C 0.012 3.988 22 N -0.795 5.795 23 Si 1.088 2.912 24 H -0.273 1.273 25 H -0.237 1.237 26 H -0.258 1.258 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.038 0.962 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.419 0.581 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.100 0.900 46 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.521 9.387 4.352 14.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C -0.144 4.144 4 C -0.169 4.169 5 C -0.149 4.149 6 C 0.042 3.958 7 H 0.083 0.917 8 C -0.227 4.227 9 N -0.863 5.863 10 S 2.812 3.188 11 O -0.999 6.999 12 O -0.997 6.997 13 C -0.891 4.891 14 C -0.021 4.021 15 C -0.285 4.285 16 C -0.074 4.074 17 C -0.255 4.255 18 C 0.147 3.853 19 C -0.531 4.531 20 H 0.111 0.889 21 C -0.208 4.208 22 N -0.417 5.417 23 Si 0.904 3.096 24 H -0.198 1.198 25 H -0.161 1.161 26 H -0.182 1.182 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.255 0.745 42 H 0.138 0.862 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.118 0.882 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.655 8.725 3.131 13.385 hybrid contribution 1.174 -0.318 1.148 1.673 sum -8.481 8.408 4.279 12.686 Atomic orbital electron populations 1.21738 0.94606 1.01670 1.02288 1.21618 0.96809 0.97760 1.01134 1.21521 0.94468 0.96008 1.02443 1.21718 0.96025 0.97057 1.02136 1.21836 0.92058 0.96839 1.04147 1.20892 0.96178 0.94539 0.84200 0.91655 1.22317 1.01308 0.95357 1.03672 1.55374 1.44868 1.68831 1.17231 1.00447 0.72741 0.73093 0.72503 1.93423 1.59780 1.70211 1.76531 1.93484 1.85732 1.82317 1.38144 1.30050 1.17340 1.24482 1.17230 1.20610 0.93797 0.96251 0.91410 1.20804 1.06776 0.97610 1.03316 1.21151 0.93922 0.97415 0.94897 1.21378 1.05007 1.01236 0.97879 1.17161 0.86499 0.90031 0.91560 1.21018 1.28557 0.98058 1.05451 0.88884 1.28338 1.03425 0.90707 0.98287 1.70556 1.16181 1.26670 1.28252 0.83470 0.72687 0.78021 0.75441 1.19771 1.16084 1.18208 0.93058 0.91858 0.92127 0.93505 0.93525 0.91060 0.91215 0.91918 0.94297 0.88888 0.89778 0.89510 0.93449 0.90800 0.74505 0.86203 0.85656 0.86044 0.88184 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.91 71.98 0.71 -2.33 16 2 C -0.14 -3.61 5.93 30.59 0.18 -3.43 16 3 C -0.11 -2.52 5.21 30.59 0.16 -2.36 16 4 C -0.13 -3.74 5.10 30.60 0.16 -3.58 16 5 C -0.11 -2.48 4.80 30.60 0.15 -2.34 16 6 C 0.15 4.15 2.77 44.99 0.12 4.27 16 7 H 0.07 2.05 7.82 -2.38 -0.02 2.03 16 8 C -0.17 -3.96 9.52 71.98 0.69 -3.27 16 9 N -1.10 -36.70 4.10 -169.38 -0.70 -37.39 16 10 S 2.72 117.76 4.88 -56.49 -0.28 117.48 16 11 O -1.01 -45.26 16.08 -128.00 -2.06 -47.31 16 12 O -1.01 -50.74 16.48 -128.00 -2.11 -52.85 16 13 C -0.80 -37.25 5.75 22.73 0.13 -37.12 16 14 C 0.00 -0.04 9.54 22.22 0.21 0.17 16 15 C -0.27 -10.95 10.05 22.46 0.23 -10.72 16 16 C -0.06 -2.36 10.02 22.22 0.22 -2.14 16 17 C -0.24 -11.29 7.93 22.73 0.18 -11.11 16 18 C 0.15 7.49 5.33 -21.29 -0.11 7.38 16 19 C -0.50 -24.43 6.55 23.46 0.15 -24.27 16 20 H 0.09 4.25 5.12 -2.91 -0.01 4.23 16 21 C 0.01 0.59 4.96 85.26 0.42 1.01 16 22 N -0.80 -40.76 12.28 21.83 0.27 -40.49 16 23 Si 1.09 39.96 30.00 68.60 2.06 42.02 16 24 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 25 H -0.24 -7.65 6.24 99.48 0.62 -7.03 16 26 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 27 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 1.45 7.28 -2.39 -0.02 1.43 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 2.11 5.94 -2.39 -0.01 2.10 16 35 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.05 1.34 7.48 -2.39 -0.02 1.32 16 40 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.42 12.36 8.58 -96.75 -0.83 11.53 16 42 H 0.12 4.88 7.32 -2.92 -0.02 4.86 16 43 H 0.13 4.36 8.06 -2.91 -0.02 4.33 16 44 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 45 H 0.10 4.95 6.38 -2.91 -0.02 4.93 16 46 H 0.29 15.51 6.59 -92.71 -0.61 14.90 16 Total: -1.00 -63.04 375.84 1.00 -62.04 By element: Atomic # 1 Polarization: 46.13 SS G_CDS: 0.21 Total: 46.34 kcal Atomic # 6 Polarization: -93.43 SS G_CDS: 3.60 Total: -89.83 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -0.43 Total: -77.88 kcal Atomic # 8 Polarization: -96.00 SS G_CDS: -4.17 Total: -100.17 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.06 Total: 42.02 kcal Atomic # 16 Polarization: 117.76 SS G_CDS: -0.28 Total: 117.48 kcal Total: -63.04 1.00 -62.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798225651.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.953 kcal (2) G-P(sol) polarization free energy of solvation -63.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds