Wall clock time and date at job start Tue Mar 31 2020 14:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.47132 * 2 1 4 4 C 1.52994 * 109.47203 * 239.99682 * 2 1 3 5 5 C 1.47202 * 109.47060 * 119.99304 * 2 1 3 6 6 C 2.64600 * 109.46775 * 119.99499 * 2 1 3 7 7 C 4.11801 * 109.46915 * 119.99571 * 2 1 3 8 8 O 1.45198 * 109.47125 * 356.85191 * 7 6 5 9 9 C 1.34871 * 117.00166 * 175.28404 * 8 7 6 10 10 O 1.21593 * 119.99359 * 4.26507 * 9 8 7 11 11 C 1.46704 * 120.00359 * 184.27050 * 9 8 7 12 12 C 1.36221 * 125.44869 * 185.26551 * 11 9 8 13 13 C 1.41657 * 107.74135 * 180.02562 * 12 11 9 14 14 C 1.40050 * 133.33604 * 180.02562 * 13 12 11 15 15 C 1.36567 * 119.82757 * 179.97438 * 14 13 12 16 16 C 1.38861 * 120.60508 * 359.97438 * 15 14 13 17 17 C 1.37846 * 120.63785 * 0.28470 * 16 15 14 18 18 C 1.39089 * 119.81335 * 359.47573 * 17 16 15 19 19 N 1.37817 * 133.15286 * 180.18703 * 18 17 16 20 20 C 1.36880 * 125.62098 * 0.28746 * 19 18 17 21 21 H 1.08003 * 119.99845 * 218.37814 * 20 19 18 22 22 C 1.39014 * 119.99963 * 38.37266 * 20 19 18 23 23 N 1.31346 * 120.00083 * 17.68143 * 22 20 19 24 24 Si 1.86807 * 120.00194 * 197.67886 * 22 20 19 25 25 H 1.48498 * 109.46928 * 94.99038 * 24 22 20 26 26 H 1.48492 * 109.47284 * 214.99089 * 24 22 20 27 27 H 1.48499 * 109.46638 * 334.99448 * 24 22 20 28 28 H 1.08997 * 109.46834 * 300.00761 * 1 2 3 29 29 H 1.09003 * 109.46864 * 59.99984 * 1 2 3 30 30 H 1.08990 * 109.47239 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46813 * 184.55508 * 3 2 1 32 32 H 1.09003 * 109.46943 * 304.54671 * 3 2 1 33 33 H 1.08993 * 109.47566 * 64.54689 * 3 2 1 34 34 H 1.09004 * 109.47183 * 300.00073 * 4 2 1 35 35 H 1.08998 * 109.47380 * 59.99824 * 4 2 1 36 36 H 1.08996 * 109.47228 * 180.02562 * 4 2 1 37 37 H 1.09004 * 109.47023 * 236.85030 * 7 6 5 38 38 H 1.09001 * 109.47164 * 116.84923 * 7 6 5 39 39 H 1.07990 * 126.12981 * 0.04929 * 12 11 9 40 40 H 1.07996 * 120.08535 * 359.97438 * 14 13 12 41 41 H 1.08003 * 119.69336 * 179.97438 * 15 14 13 42 42 H 1.07995 * 119.68117 * 180.02562 * 16 15 14 43 43 H 1.07997 * 120.09014 * 179.65845 * 17 16 15 44 44 H 0.97000 * 120.00182 * 184.94288 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0207 -0.6938 1.2020 6 6 2.4119 -1.2472 2.1606 7 6 2.9026 -1.9410 3.3625 8 8 1.9125 -2.9083 3.8011 9 6 2.2492 -3.7018 4.8384 10 8 3.3088 -3.5363 5.4114 11 6 1.3371 -4.7645 5.2754 12 6 1.5162 -5.5603 6.3663 13 6 0.4172 -6.4514 6.4357 14 6 0.0649 -7.4756 7.3236 15 6 -1.0887 -8.1792 7.1256 16 6 -1.9184 -7.8887 6.0507 17 6 -1.5903 -6.8889 5.1602 18 6 -0.4231 -6.1550 5.3438 19 7 0.1586 -5.1190 4.6454 20 6 -0.3474 -4.5366 3.5147 21 1 0.3175 -4.2352 2.7188 22 6 -1.7170 -4.3332 3.3909 23 7 -2.4848 -4.3665 4.4560 24 14 -2.4654 -4.0125 1.7096 25 1 -2.9615 -5.2896 1.1369 26 1 -3.5953 -3.0585 1.8446 27 1 -1.4341 -3.4345 0.8109 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1270 1.4435 -0.0816 32 1 1.6117 1.9793 -0.8465 33 1 1.7449 1.9323 0.9278 34 1 1.6767 -1.7490 -1.2491 35 1 1.6768 -0.2076 -2.1392 36 1 3.1300 -0.7217 -1.2489 37 1 3.0769 -1.2142 4.1559 38 1 3.8349 -2.4555 3.1299 39 1 2.3469 -5.5190 7.0551 40 1 0.7037 -7.7083 8.1627 41 1 -1.3582 -8.9688 7.8115 42 1 -2.8273 -8.4543 5.9086 43 1 -2.2392 -6.6740 4.3241 44 1 -3.4477 -4.2963 4.3621 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798888934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:35 Heat of formation + Delta-G solvation = 9.772317 kcal Electronic energy + Delta-G solvation = -26801.839900 eV Core-core repulsion = 23071.740756 eV Total energy + Delta-G solvation = -3730.099144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.54709 -39.33874 -37.51155 -36.09572 -35.88874 -33.65237 -32.46643 -30.74319 -29.15660 -28.43732 -27.44446 -27.37147 -27.09395 -24.95306 -23.47067 -21.27151 -21.05055 -20.43969 -19.30647 -18.08648 -17.17165 -16.83726 -16.05047 -15.79953 -15.44021 -14.86471 -14.74627 -14.40597 -14.37561 -14.36436 -13.74828 -13.22515 -13.02475 -12.95295 -12.77273 -12.59475 -12.51473 -12.32077 -11.97916 -11.85034 -11.76967 -11.61907 -11.36243 -11.31487 -11.27485 -11.20698 -10.79163 -10.65297 -10.57887 -10.30783 -10.20847 -9.84032 -9.80757 -9.57229 -9.18156 -8.69922 -7.25611 -6.95059 -6.60071 -4.50309 1.62277 2.33216 2.72526 2.76884 2.88316 2.98337 2.99477 3.04178 3.62810 3.76264 4.05625 4.12066 4.51405 4.67667 4.82228 4.85172 4.91240 5.04578 5.33396 5.42232 5.44144 5.49093 5.53448 5.61110 5.70962 5.73643 5.76141 5.84151 5.90588 5.93206 6.04776 6.10991 6.15636 6.22426 6.36892 6.50370 6.60514 6.79338 6.89977 6.98702 7.05457 7.11569 7.44801 7.54587 7.62459 7.66765 7.86426 7.98493 8.32500 8.40022 8.76654 9.23121 10.14955 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013844 B = 0.003999 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.046941 B = 7000.264012 C = 8705.804276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 C -0.139 4.139 4 C -0.141 4.141 5 C -0.142 4.142 6 C -0.179 4.179 7 C 0.181 3.819 8 O -0.328 6.328 9 C 0.548 3.452 10 O -0.526 6.526 11 C -0.022 4.022 12 C -0.159 4.159 13 C -0.131 4.131 14 C -0.085 4.085 15 C -0.157 4.157 16 C -0.148 4.148 17 C -0.051 4.051 18 C 0.092 3.908 19 N -0.237 5.237 20 C -0.338 4.338 21 H 0.117 0.883 22 C 0.055 3.945 23 N -0.816 5.816 24 Si 0.923 3.077 25 H -0.268 1.268 26 H -0.276 1.276 27 H -0.259 1.259 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.134 0.866 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.114 0.886 44 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.397 5.082 -7.394 9.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.046 3.954 3 C -0.196 4.196 4 C -0.198 4.198 5 C -0.143 4.143 6 C -0.179 4.179 7 C 0.108 3.892 8 O -0.244 6.244 9 C 0.396 3.604 10 O -0.417 6.417 11 C -0.135 4.135 12 C -0.187 4.187 13 C -0.136 4.136 14 C -0.104 4.104 15 C -0.176 4.176 16 C -0.169 4.169 17 C -0.071 4.071 18 C -0.024 4.024 19 N 0.102 4.898 20 C -0.466 4.466 21 H 0.134 0.866 22 C -0.158 4.158 23 N -0.444 5.444 24 Si 0.747 3.253 25 H -0.193 1.193 26 H -0.201 1.201 27 H -0.183 1.183 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.152 0.848 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.132 0.868 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.399 5.505 -7.499 9.904 hybrid contribution -0.446 0.356 -0.541 0.787 sum 2.953 5.861 -8.040 10.379 Atomic orbital electron populations 1.21909 0.92655 1.03154 1.02310 1.17715 0.95661 0.93865 0.88184 1.21883 1.01305 0.94014 1.02418 1.21893 1.01322 1.00863 0.95694 1.22099 0.97210 0.99106 0.95843 1.21501 1.01870 0.99288 0.95252 1.19334 0.90034 0.89800 0.90034 1.86947 1.43900 1.45674 1.47884 1.20070 0.84147 0.79284 0.76862 1.90795 1.24226 1.70637 1.56014 1.19015 0.94086 1.01542 0.98896 1.20293 1.00375 0.99573 0.98453 1.17932 0.96639 1.00462 0.98526 1.20053 0.96872 0.95425 0.98018 1.20286 0.96352 1.01617 0.99357 1.20579 0.99868 0.99843 0.96561 1.20109 0.94022 0.93600 0.99336 1.18132 0.96808 0.91787 0.95673 1.40135 1.13041 1.19328 1.17312 1.19990 0.92470 1.40124 0.94058 0.86601 1.25613 0.96551 0.94378 0.99293 1.70015 1.06381 1.39206 1.28835 0.85947 0.79178 0.79056 0.81134 1.19343 1.20068 1.18275 0.91972 0.91638 0.91740 0.92269 0.91633 0.92141 0.91933 0.91652 0.92268 0.89169 0.89216 0.84769 0.87626 0.87803 0.87581 0.86816 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.43 37.16 0.31 -1.40 16 2 C 0.05 0.55 0.95 -157.29 -0.15 0.40 16 3 C -0.14 -1.32 8.43 37.16 0.31 -1.01 16 4 C -0.14 -1.45 8.43 37.15 0.31 -1.14 16 5 C -0.14 -2.20 11.77 -37.12 -0.44 -2.64 16 6 C -0.18 -3.03 13.74 -37.12 -0.51 -3.54 16 7 C 0.18 3.09 5.97 34.37 0.21 3.30 16 8 O -0.33 -7.08 7.99 -40.96 -0.33 -7.40 16 9 C 0.55 12.53 7.90 34.15 0.27 12.80 16 10 O -0.53 -11.89 16.62 -19.34 -0.32 -12.21 16 11 C -0.02 -0.55 6.76 -82.28 -0.56 -1.10 16 12 C -0.16 -3.70 10.55 -39.00 -0.41 -4.11 16 13 C -0.13 -3.08 6.16 -106.89 -0.66 -3.74 16 14 C -0.08 -1.72 10.06 -39.51 -0.40 -2.11 16 15 C -0.16 -2.99 9.97 -39.95 -0.40 -3.39 16 16 C -0.15 -2.98 10.02 -39.49 -0.40 -3.37 16 17 C -0.05 -1.19 8.55 -39.41 -0.34 -1.53 16 18 C 0.09 2.32 6.08 -83.84 -0.51 1.81 16 19 N -0.24 -6.15 2.83 -56.10 -0.16 -6.31 16 20 C -0.34 -8.68 8.73 -15.01 -0.13 -8.81 16 21 H 0.12 2.94 6.88 -52.48 -0.36 2.58 16 22 C 0.05 1.34 4.43 -17.47 -0.08 1.27 16 23 N -0.82 -20.87 10.89 55.50 0.60 -20.27 16 24 Si 0.92 18.68 29.59 -169.99 -5.03 13.65 16 25 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 26 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 27 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 38 H 0.09 1.38 8.09 -51.93 -0.42 0.96 16 39 H 0.13 2.79 8.06 -52.49 -0.42 2.37 16 40 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.10 1.63 8.06 -52.48 -0.42 1.20 16 42 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 43 H 0.11 2.70 6.44 -52.49 -0.34 2.36 16 44 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 379.55 15.07 5.72 5.72 Total: -1.00 -29.17 379.55 -9.24 -38.41 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -6.17 Total: 6.72 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -3.55 Total: -18.31 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.45 Total: -26.58 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.65 Total: -19.62 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.17 -9.24 -38.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798888934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.185 kcal (2) G-P(sol) polarization free energy of solvation -29.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds