Wall clock time and date at job start Tue Mar 31 2020 14:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.47132 * 2 1 4 4 C 1.52994 * 109.47203 * 239.99682 * 2 1 3 5 5 C 1.47202 * 109.47060 * 119.99304 * 2 1 3 6 6 C 2.64600 * 109.46775 * 119.99499 * 2 1 3 7 7 C 4.11801 * 109.46915 * 119.99571 * 2 1 3 8 8 O 1.45198 * 109.47125 * 356.85191 * 7 6 5 9 9 C 1.34871 * 117.00166 * 175.28404 * 8 7 6 10 10 O 1.21593 * 119.99359 * 4.26507 * 9 8 7 11 11 C 1.46704 * 120.00359 * 184.27050 * 9 8 7 12 12 C 1.36221 * 125.44869 * 185.26551 * 11 9 8 13 13 C 1.41657 * 107.74135 * 180.02562 * 12 11 9 14 14 C 1.40050 * 133.33604 * 180.02562 * 13 12 11 15 15 C 1.36567 * 119.82757 * 179.97438 * 14 13 12 16 16 C 1.38861 * 120.60508 * 359.97438 * 15 14 13 17 17 C 1.37846 * 120.63785 * 0.28470 * 16 15 14 18 18 C 1.39089 * 119.81335 * 359.47573 * 17 16 15 19 19 N 1.37817 * 133.15286 * 180.18703 * 18 17 16 20 20 C 1.36880 * 125.62098 * 0.28746 * 19 18 17 21 21 H 1.08003 * 119.99845 * 218.37814 * 20 19 18 22 22 C 1.39014 * 119.99963 * 38.37266 * 20 19 18 23 23 N 1.31346 * 120.00083 * 17.68143 * 22 20 19 24 24 Si 1.86807 * 120.00194 * 197.67886 * 22 20 19 25 25 H 1.48498 * 109.46928 * 94.99038 * 24 22 20 26 26 H 1.48492 * 109.47284 * 214.99089 * 24 22 20 27 27 H 1.48499 * 109.46638 * 334.99448 * 24 22 20 28 28 H 1.08997 * 109.46834 * 300.00761 * 1 2 3 29 29 H 1.09003 * 109.46864 * 59.99984 * 1 2 3 30 30 H 1.08990 * 109.47239 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46813 * 184.55508 * 3 2 1 32 32 H 1.09003 * 109.46943 * 304.54671 * 3 2 1 33 33 H 1.08993 * 109.47566 * 64.54689 * 3 2 1 34 34 H 1.09004 * 109.47183 * 300.00073 * 4 2 1 35 35 H 1.08998 * 109.47380 * 59.99824 * 4 2 1 36 36 H 1.08996 * 109.47228 * 180.02562 * 4 2 1 37 37 H 1.09004 * 109.47023 * 236.85030 * 7 6 5 38 38 H 1.09001 * 109.47164 * 116.84923 * 7 6 5 39 39 H 1.07990 * 126.12981 * 0.04929 * 12 11 9 40 40 H 1.07996 * 120.08535 * 359.97438 * 14 13 12 41 41 H 1.08003 * 119.69336 * 179.97438 * 15 14 13 42 42 H 1.07995 * 119.68117 * 180.02562 * 16 15 14 43 43 H 1.07997 * 120.09014 * 179.65845 * 17 16 15 44 44 H 0.97000 * 120.00182 * 184.94288 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0207 -0.6938 1.2020 6 6 2.4119 -1.2472 2.1606 7 6 2.9026 -1.9410 3.3625 8 8 1.9125 -2.9083 3.8011 9 6 2.2492 -3.7018 4.8384 10 8 3.3088 -3.5363 5.4114 11 6 1.3371 -4.7645 5.2754 12 6 1.5162 -5.5603 6.3663 13 6 0.4172 -6.4514 6.4357 14 6 0.0649 -7.4756 7.3236 15 6 -1.0887 -8.1792 7.1256 16 6 -1.9184 -7.8887 6.0507 17 6 -1.5903 -6.8889 5.1602 18 6 -0.4231 -6.1550 5.3438 19 7 0.1586 -5.1190 4.6454 20 6 -0.3474 -4.5366 3.5147 21 1 0.3175 -4.2352 2.7188 22 6 -1.7170 -4.3332 3.3909 23 7 -2.4848 -4.3665 4.4560 24 14 -2.4654 -4.0125 1.7096 25 1 -2.9615 -5.2896 1.1369 26 1 -3.5953 -3.0585 1.8446 27 1 -1.4341 -3.4345 0.8109 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1270 1.4435 -0.0816 32 1 1.6117 1.9793 -0.8465 33 1 1.7449 1.9323 0.9278 34 1 1.6767 -1.7490 -1.2491 35 1 1.6768 -0.2076 -2.1392 36 1 3.1300 -0.7217 -1.2489 37 1 3.0769 -1.2142 4.1559 38 1 3.8349 -2.4555 3.1299 39 1 2.3469 -5.5190 7.0551 40 1 0.7037 -7.7083 8.1627 41 1 -1.3582 -8.9688 7.8115 42 1 -2.8273 -8.4543 5.9086 43 1 -2.2392 -6.6740 4.3241 44 1 -3.4477 -4.2963 4.3621 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798888934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:34 Heat of formation + Delta-G solvation = -1.654172 kcal Electronic energy + Delta-G solvation = -26802.335390 eV Core-core repulsion = 23071.740756 eV Total energy + Delta-G solvation = -3730.594634 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.30502 -41.04582 -38.49224 -37.73834 -37.58441 -35.47163 -33.75105 -32.52871 -30.83600 -30.12049 -28.52488 -28.26234 -28.21317 -26.80492 -25.13503 -22.79500 -22.34236 -22.08247 -21.08000 -19.85234 -18.87689 -18.24022 -17.67550 -17.32624 -17.01644 -16.50790 -16.40031 -15.77686 -15.55895 -15.26255 -15.21457 -14.86526 -14.68298 -14.57538 -14.45868 -13.97402 -13.65038 -13.58496 -13.35037 -13.33459 -13.03063 -12.90743 -12.67648 -12.57261 -12.41245 -12.38037 -12.28466 -12.16565 -12.04288 -11.96396 -11.87529 -11.50890 -11.10454 -10.97701 -10.82193 -10.46713 -9.03280 -8.74392 -8.37201 -6.41559 -0.11844 0.92344 1.06429 1.13851 1.30056 1.35813 1.43950 1.51605 2.06131 2.19247 2.25900 2.73098 2.82719 2.97372 3.33049 3.87576 3.91974 3.94614 3.97649 4.13834 4.18396 4.20822 4.40681 4.41923 4.48740 4.67648 4.70274 4.70565 4.78014 4.78539 4.91125 4.91675 4.93770 5.05376 5.10191 5.14280 5.15515 5.22218 5.30748 5.31141 5.34585 5.42309 5.70267 5.87708 5.93726 6.13598 6.26201 6.40876 6.54097 6.63997 6.95076 7.39472 8.33776 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013844 B = 0.003999 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.046941 B = 7000.264012 C = 8705.804276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.036 3.964 3 C -0.134 4.134 4 C -0.138 4.138 5 C -0.127 4.127 6 C -0.226 4.226 7 C 0.179 3.821 8 O -0.345 6.345 9 C 0.550 3.450 10 O -0.530 6.530 11 C -0.055 4.055 12 C -0.157 4.157 13 C -0.153 4.153 14 C -0.085 4.085 15 C -0.151 4.151 16 C -0.131 4.131 17 C -0.087 4.087 18 C 0.067 3.933 19 N -0.259 5.259 20 C -0.363 4.363 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.848 5.848 24 Si 0.984 3.016 25 H -0.258 1.258 26 H -0.268 1.268 27 H -0.258 1.258 28 H 0.052 0.948 29 H 0.099 0.901 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.045 0.955 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.154 0.846 40 H 0.140 0.860 41 H 0.150 0.850 42 H 0.139 0.861 43 H 0.098 0.902 44 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.891 4.806 -7.871 9.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.036 3.964 3 C -0.191 4.191 4 C -0.195 4.195 5 C -0.127 4.127 6 C -0.227 4.227 7 C 0.107 3.893 8 O -0.261 6.261 9 C 0.398 3.602 10 O -0.422 6.422 11 C -0.167 4.167 12 C -0.185 4.185 13 C -0.158 4.158 14 C -0.103 4.103 15 C -0.170 4.170 16 C -0.151 4.151 17 C -0.107 4.107 18 C -0.049 4.049 19 N 0.078 4.922 20 C -0.490 4.490 21 H 0.122 0.878 22 C -0.189 4.189 23 N -0.478 5.478 24 Si 0.804 3.196 25 H -0.182 1.182 26 H -0.193 1.193 27 H -0.182 1.182 28 H 0.071 0.929 29 H 0.118 0.882 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.172 0.828 40 H 0.158 0.842 41 H 0.168 0.832 42 H 0.157 0.843 43 H 0.117 0.883 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.905 5.231 -7.977 9.972 hybrid contribution -0.272 0.377 -0.311 0.559 sum 2.633 5.608 -8.288 10.348 Atomic orbital electron populations 1.21942 0.92597 1.01956 1.03582 1.18105 0.95723 0.95361 0.87234 1.21870 1.01798 0.92104 1.03328 1.21901 1.01664 1.00047 0.95905 1.23151 0.95492 0.97999 0.96097 1.21704 1.03830 1.00905 0.96213 1.19577 0.89623 0.89381 0.90739 1.86906 1.45600 1.46277 1.47361 1.19918 0.83867 0.79267 0.77109 1.90759 1.24193 1.70947 1.56310 1.19518 0.94496 1.02726 0.99948 1.20625 1.00822 0.98919 0.98137 1.18363 0.96562 1.01746 0.99081 1.20505 0.97757 0.94042 0.98045 1.20792 0.95144 1.01876 0.99155 1.21062 1.00695 0.97972 0.95379 1.20202 0.94148 0.95653 1.00706 1.18669 0.97799 0.92056 0.96332 1.40303 1.13740 1.20243 1.17929 1.20044 0.93064 1.41594 0.94339 0.87811 1.26410 0.96333 0.93598 1.02550 1.70084 1.06675 1.40401 1.30640 0.85073 0.78337 0.79339 0.76885 1.18236 1.19260 1.18201 0.92876 0.88235 0.94123 0.91700 0.88819 0.92843 0.93612 0.88651 0.91789 0.87924 0.87838 0.82793 0.84209 0.83208 0.84306 0.88345 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.43 71.98 0.61 -2.67 16 2 C 0.04 0.81 0.95 -53.98 -0.05 0.76 16 3 C -0.13 -2.24 8.43 71.98 0.61 -1.64 16 4 C -0.14 -2.61 8.43 71.98 0.61 -2.00 16 5 C -0.13 -3.99 11.77 31.13 0.37 -3.62 16 6 C -0.23 -7.95 13.74 31.13 0.43 -7.53 16 7 C 0.18 6.40 5.97 70.18 0.42 6.82 16 8 O -0.34 -15.75 7.99 -57.84 -0.46 -16.22 16 9 C 0.55 26.29 7.90 70.03 0.55 26.84 16 10 O -0.53 -24.62 16.62 19.53 0.32 -24.29 16 11 C -0.05 -2.81 6.76 39.87 0.27 -2.54 16 12 C -0.16 -7.41 10.55 22.64 0.24 -7.17 16 13 C -0.15 -7.19 6.16 -21.33 -0.13 -7.32 16 14 C -0.08 -3.22 10.06 22.32 0.22 -2.99 16 15 C -0.15 -5.19 9.97 22.03 0.22 -4.97 16 16 C -0.13 -4.99 10.02 22.33 0.22 -4.76 16 17 C -0.09 -4.12 8.55 22.38 0.19 -3.93 16 18 C 0.07 3.47 6.08 39.07 0.24 3.71 16 19 N -0.26 -14.13 2.83 -331.41 -0.94 -15.07 16 20 C -0.36 -19.66 8.73 84.09 0.73 -18.92 16 21 H 0.10 5.65 6.88 -2.91 -0.02 5.63 16 22 C 0.02 1.06 4.43 84.95 0.38 1.44 16 23 N -0.85 -44.98 10.89 21.67 0.24 -44.74 16 24 Si 0.98 39.41 29.59 68.60 2.03 41.44 16 25 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 26 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 27 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.10 3.31 8.14 -2.39 -0.02 3.30 16 38 H 0.10 3.31 8.09 -2.39 -0.02 3.29 16 39 H 0.15 6.39 8.06 -2.92 -0.02 6.37 16 40 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 41 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 42 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 43 H 0.10 4.85 6.44 -2.91 -0.02 4.83 16 44 H 0.29 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -66.73 379.55 8.31 -58.41 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 1.00 Total: 30.96 kcal Atomic # 6 Polarization: -36.62 SS G_CDS: 6.12 Total: -30.50 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.70 Total: -59.81 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -0.14 Total: -40.51 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Total: -66.73 8.31 -58.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798888934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.760 kcal (2) G-P(sol) polarization free energy of solvation -66.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds