Wall clock time and date at job start Tue Mar 31 2020 13:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34435 * 125.45443 * 2 1 4 4 C 1.46748 * 106.36935 * 180.02562 * 3 2 1 5 5 C 1.47105 * 127.02249 * 180.02562 * 4 3 2 6 6 O 1.21550 * 120.00092 * 179.97438 * 5 4 3 7 7 O 1.34792 * 120.00147 * 359.97438 * 5 4 3 8 8 C 1.45196 * 117.00226 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47168 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.46894 * 179.97438 * 9 8 7 11 11 S 1.81004 * 109.46889 * 179.97438 * 10 9 8 12 12 C 1.76204 * 99.99924 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99733 * 0.02562 * 12 11 10 14 14 C 1.38797 * 120.00060 * 180.02562 * 12 11 10 15 15 N 1.31635 * 119.99925 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00203 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46927 * 59.99768 * 16 14 12 18 18 H 1.48497 * 109.47233 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47136 * 299.99958 * 16 14 12 20 20 C 1.37844 * 105.95532 * 359.75019 * 4 3 2 21 21 C 1.50696 * 125.90226 * 180.24600 * 20 4 3 22 22 N 1.34631 * 108.20322 * 0.40828 * 20 4 3 23 23 C 1.46505 * 124.80993 * 179.83682 * 22 20 4 24 24 C 1.52998 * 109.47145 * 246.02044 * 23 22 20 25 25 C 1.52998 * 109.46874 * 126.01504 * 23 22 20 26 26 H 1.08997 * 109.47595 * 274.93543 * 1 2 3 27 27 H 1.09005 * 109.47199 * 34.93540 * 1 2 3 28 28 H 1.08998 * 109.47146 * 154.93070 * 1 2 3 29 29 H 1.07996 * 126.81604 * 0.07082 * 3 2 1 30 30 H 1.09005 * 109.46919 * 300.00494 * 8 7 5 31 31 H 1.09002 * 109.47207 * 59.99818 * 8 7 5 32 32 H 1.08991 * 109.47188 * 299.99972 * 9 8 7 33 33 H 1.09004 * 109.46789 * 60.00254 * 9 8 7 34 34 H 1.08991 * 109.47496 * 300.00170 * 10 9 8 35 35 H 1.09004 * 109.46879 * 60.00697 * 10 9 8 36 36 H 0.96999 * 120.00229 * 180.02562 * 15 14 12 37 37 H 1.08996 * 109.47193 * 270.19577 * 21 20 4 38 38 H 1.09007 * 109.46694 * 30.19210 * 21 20 4 39 39 H 1.08996 * 109.47529 * 150.18839 * 21 20 4 40 40 H 1.09001 * 109.46617 * 6.01766 * 23 22 20 41 41 H 1.09001 * 109.47388 * 53.83560 * 24 23 22 42 42 H 1.08995 * 109.47016 * 173.83919 * 24 23 22 43 43 H 1.09009 * 109.46635 * 293.83552 * 24 23 22 44 44 H 1.08998 * 109.46901 * 179.97438 * 25 23 22 45 45 H 1.08996 * 109.47590 * 299.99908 * 25 23 22 46 46 H 1.09001 * 109.47284 * 60.00671 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2868 1.0951 0.0000 4 6 3.6736 0.6153 -0.0006 5 6 4.8947 1.4356 -0.0003 6 8 5.9862 0.9007 -0.0005 7 8 4.8032 2.7804 0.0001 8 6 6.0492 3.5259 0.0009 9 6 5.7462 5.0255 0.0019 10 6 7.0592 5.8110 0.0035 11 16 6.7008 7.5852 0.0039 12 6 8.3411 8.2288 0.0049 13 1 9.1853 7.5552 0.0047 14 6 8.5482 9.6012 0.0060 15 7 7.5191 10.4221 0.0068 16 14 10.2871 10.2835 0.0064 17 1 11.0034 9.8135 -1.2066 18 1 10.2366 11.7676 0.0082 19 1 11.0037 9.8116 1.2184 20 6 3.5983 -0.7611 0.0048 21 6 4.7689 -1.7101 0.0116 22 7 2.2984 -1.1113 -0.0006 23 6 1.8037 -2.4903 -0.0008 24 6 1.0857 -2.7743 -1.3217 25 6 0.8278 -2.6821 1.1618 26 1 -0.3634 0.0884 1.0238 27 1 -0.3634 0.8425 -0.5885 28 1 -0.3633 -0.9308 -0.4354 29 1 1.9579 2.1237 0.0011 30 1 6.6244 3.2711 0.8911 31 1 6.6253 3.2718 -0.8889 32 1 5.1709 5.2806 -0.8879 33 1 5.1704 5.2792 0.8920 34 1 7.6342 5.5560 0.8935 35 1 7.6353 5.5574 -0.8864 36 1 7.6638 11.3812 0.0072 37 1 5.0559 -1.9404 -1.0143 38 1 5.6093 -1.2467 0.5287 39 1 4.4884 -2.6295 0.5256 40 1 2.6425 -3.1771 0.1118 41 1 1.7468 -2.5327 -2.1539 42 1 0.8138 -3.8288 -1.3679 43 1 0.1848 -2.1638 -1.3841 44 1 0.4594 -3.7079 1.1614 45 1 1.3393 -2.4798 2.1028 46 1 -0.0111 -1.9952 1.0492 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805335710.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:40 Heat of formation + Delta-G solvation = -64.760056 kcal Electronic energy + Delta-G solvation = -24373.775276 eV Core-core repulsion = 20775.888117 eV Total energy + Delta-G solvation = -3597.887159 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.91667 -39.81212 -36.47221 -35.71681 -33.35190 -33.07566 -32.39661 -30.34895 -29.47446 -27.93753 -26.67919 -25.52670 -24.96969 -23.34792 -22.10667 -21.18612 -20.09684 -18.67550 -17.51422 -17.19731 -16.41793 -16.37345 -16.21619 -15.63922 -14.99208 -14.77799 -14.39120 -14.27708 -14.03425 -13.81990 -13.70250 -13.49777 -13.38788 -12.98024 -12.80538 -12.72992 -12.56244 -12.51223 -12.46891 -12.28038 -12.02398 -11.81771 -11.73937 -11.23016 -11.14530 -11.05366 -10.85620 -10.83949 -10.62787 -10.27210 -10.10759 -9.57550 -9.02503 -8.87448 -8.29773 -8.22863 -6.50765 -6.20074 -3.90639 1.40610 2.13025 2.29354 2.98661 3.26304 3.27057 3.30964 3.31647 3.64422 3.97588 4.24711 4.25825 4.28408 4.42108 4.52215 4.70106 4.87080 4.92579 4.98849 5.04313 5.11597 5.15759 5.18160 5.19604 5.27042 5.29297 5.34300 5.34967 5.42173 5.48489 5.52372 5.63089 5.67765 5.72122 5.75118 5.89313 5.91248 6.12053 6.29426 6.55134 6.55931 6.65809 6.80971 6.87392 6.96671 7.63298 8.06814 8.39309 9.26020 10.88029 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.033405 B = 0.001814 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.990868 B =15432.691392 C =16059.966143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.006 3.994 3 C -0.139 4.139 4 C -0.223 4.223 5 C 0.540 3.460 6 O -0.527 6.527 7 O -0.350 6.350 8 C 0.075 3.925 9 C -0.097 4.097 10 C -0.114 4.114 11 S -0.125 6.125 12 C -0.518 4.518 13 H 0.073 0.927 14 C 0.071 3.929 15 N -0.870 5.870 16 Si 0.919 3.081 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.113 3.887 21 C -0.096 4.096 22 N -0.428 5.428 23 C 0.120 3.880 24 C -0.169 4.169 25 C -0.172 4.172 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.152 0.848 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.268 0.732 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.101 0.899 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.469 -30.122 -0.061 34.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C -0.162 4.162 4 C -0.231 4.231 5 C 0.387 3.613 6 O -0.418 6.418 7 O -0.266 6.266 8 C 0.000 4.000 9 C -0.136 4.136 10 C -0.262 4.262 11 S 0.104 5.896 12 C -0.666 4.666 13 H 0.091 0.909 14 C -0.138 4.138 15 N -0.505 5.505 16 Si 0.746 3.254 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.199 1.199 20 C -0.005 4.005 21 C -0.153 4.153 22 N -0.106 5.106 23 C 0.018 3.982 24 C -0.226 4.226 25 C -0.230 4.230 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.170 0.830 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.083 0.917 40 H 0.119 0.881 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.351 -29.797 -0.062 34.481 hybrid contribution 2.471 -0.108 -0.001 2.473 sum -14.880 -29.904 -0.063 33.402 Atomic orbital electron populations 1.20589 0.88018 1.03270 1.02833 1.20116 0.93602 0.85245 1.11131 1.21892 0.90282 0.98059 1.05967 1.19363 0.91669 0.90834 1.21253 1.20059 0.87992 0.81035 0.72219 1.90781 1.29384 1.73617 1.48062 1.86544 1.37332 1.18800 1.83967 1.23190 0.83246 0.91233 1.02362 1.21264 0.98144 0.89929 1.04219 1.23179 0.98266 1.01483 1.03288 1.84640 1.14135 0.93989 1.96873 1.22667 0.91171 0.94156 1.58630 0.90904 1.25014 0.98258 0.95916 0.94584 1.70013 1.29967 1.03393 1.47161 0.86209 0.82695 0.77679 0.78863 1.19927 1.20821 1.19934 1.20484 0.84900 0.93502 1.01574 1.20600 0.94612 0.96507 1.03559 1.43756 1.04730 1.06210 1.55855 1.21532 0.98644 0.80818 0.97213 1.22302 1.01467 1.02855 0.95996 1.22344 0.99772 1.03382 0.97492 0.90913 0.90096 0.91184 0.83017 0.91373 0.91364 0.90425 0.90430 0.91768 0.91772 0.92241 0.90254 0.88063 0.91733 0.88087 0.91541 0.90525 0.91056 0.90513 0.91602 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.51 8.49 36.00 0.31 -0.20 16 2 C 0.01 0.05 6.37 -81.89 -0.52 -0.47 16 3 C -0.14 -1.61 10.89 -37.49 -0.41 -2.02 16 4 C -0.22 -3.00 6.33 -103.01 -0.65 -3.66 16 5 C 0.54 8.57 7.95 34.33 0.27 8.85 16 6 O -0.53 -9.09 14.67 -19.30 -0.28 -9.38 16 7 O -0.35 -5.70 10.12 -40.74 -0.41 -6.12 16 8 C 0.07 1.21 5.48 37.16 0.20 1.42 16 9 C -0.10 -1.71 5.60 -26.73 -0.15 -1.86 16 10 C -0.11 -2.37 5.67 37.16 0.21 -2.16 16 11 S -0.12 -3.32 21.44 -107.50 -2.30 -5.63 16 12 C -0.52 -15.09 9.50 30.94 0.29 -14.80 16 13 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 14 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 15 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 16 Si 0.92 21.83 29.55 -169.99 -5.02 16.81 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 C 0.11 1.23 6.93 -81.51 -0.56 0.66 16 21 C -0.10 -0.85 9.40 36.00 0.34 -0.51 16 22 N -0.43 -3.67 2.56 -100.67 -0.26 -3.93 16 23 C 0.12 0.61 3.30 -67.93 -0.22 0.39 16 24 C -0.17 -0.68 9.20 37.16 0.34 -0.33 16 25 C -0.17 -0.67 9.06 37.16 0.34 -0.34 16 26 H 0.07 0.36 7.90 -51.93 -0.41 -0.05 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.29 4.17 -51.93 -0.22 0.08 16 29 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.06 1.32 8.14 -51.92 -0.42 0.89 16 35 H 0.06 1.32 8.14 -51.91 -0.42 0.89 16 36 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 1.10 6.53 -51.93 -0.34 0.76 16 39 H 0.06 0.40 6.88 -51.93 -0.36 0.04 16 40 H 0.10 0.42 6.44 -51.93 -0.33 0.09 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.07 0.28 5.52 -51.92 -0.29 -0.01 16 44 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.29 4.93 -51.93 -0.26 0.03 16 LS Contribution 386.78 15.07 5.83 5.83 Total: -1.00 -34.29 386.78 -9.27 -43.57 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -7.24 Total: -2.57 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -0.31 Total: -13.07 kcal Atomic # 7 Polarization: -29.92 SS G_CDS: 0.48 Total: -29.45 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.70 Total: -15.49 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -3.32 SS G_CDS: -2.30 Total: -5.63 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.29 -9.27 -43.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805335710.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.193 kcal (2) G-P(sol) polarization free energy of solvation -34.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds