Wall clock time and date at job start Tue Mar 31 2020 13:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34435 * 125.45443 * 2 1 4 4 C 1.46748 * 106.36935 * 180.02562 * 3 2 1 5 5 C 1.47105 * 127.02249 * 180.02562 * 4 3 2 6 6 O 1.21550 * 120.00092 * 179.97438 * 5 4 3 7 7 O 1.34792 * 120.00147 * 359.97438 * 5 4 3 8 8 C 1.45196 * 117.00226 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47168 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.46894 * 179.97438 * 9 8 7 11 11 S 1.81004 * 109.46889 * 179.97438 * 10 9 8 12 12 C 1.76204 * 99.99924 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99733 * 0.02562 * 12 11 10 14 14 C 1.38797 * 120.00060 * 180.02562 * 12 11 10 15 15 N 1.31635 * 119.99925 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00203 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46927 * 59.99768 * 16 14 12 18 18 H 1.48497 * 109.47233 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47136 * 299.99958 * 16 14 12 20 20 C 1.37844 * 105.95532 * 359.75019 * 4 3 2 21 21 C 1.50696 * 125.90226 * 180.24600 * 20 4 3 22 22 N 1.34631 * 108.20322 * 0.40828 * 20 4 3 23 23 C 1.46505 * 124.80993 * 179.83682 * 22 20 4 24 24 C 1.52998 * 109.47145 * 246.02044 * 23 22 20 25 25 C 1.52998 * 109.46874 * 126.01504 * 23 22 20 26 26 H 1.08997 * 109.47595 * 274.93543 * 1 2 3 27 27 H 1.09005 * 109.47199 * 34.93540 * 1 2 3 28 28 H 1.08998 * 109.47146 * 154.93070 * 1 2 3 29 29 H 1.07996 * 126.81604 * 0.07082 * 3 2 1 30 30 H 1.09005 * 109.46919 * 300.00494 * 8 7 5 31 31 H 1.09002 * 109.47207 * 59.99818 * 8 7 5 32 32 H 1.08991 * 109.47188 * 299.99972 * 9 8 7 33 33 H 1.09004 * 109.46789 * 60.00254 * 9 8 7 34 34 H 1.08991 * 109.47496 * 300.00170 * 10 9 8 35 35 H 1.09004 * 109.46879 * 60.00697 * 10 9 8 36 36 H 0.96999 * 120.00229 * 180.02562 * 15 14 12 37 37 H 1.08996 * 109.47193 * 270.19577 * 21 20 4 38 38 H 1.09007 * 109.46694 * 30.19210 * 21 20 4 39 39 H 1.08996 * 109.47529 * 150.18839 * 21 20 4 40 40 H 1.09001 * 109.46617 * 6.01766 * 23 22 20 41 41 H 1.09001 * 109.47388 * 53.83560 * 24 23 22 42 42 H 1.08995 * 109.47016 * 173.83919 * 24 23 22 43 43 H 1.09009 * 109.46635 * 293.83552 * 24 23 22 44 44 H 1.08998 * 109.46901 * 179.97438 * 25 23 22 45 45 H 1.08996 * 109.47590 * 299.99908 * 25 23 22 46 46 H 1.09001 * 109.47284 * 60.00671 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2868 1.0951 0.0000 4 6 3.6736 0.6153 -0.0006 5 6 4.8947 1.4356 -0.0003 6 8 5.9862 0.9007 -0.0005 7 8 4.8032 2.7804 0.0001 8 6 6.0492 3.5259 0.0009 9 6 5.7462 5.0255 0.0019 10 6 7.0592 5.8110 0.0035 11 16 6.7008 7.5852 0.0039 12 6 8.3411 8.2288 0.0049 13 1 9.1853 7.5552 0.0047 14 6 8.5482 9.6012 0.0060 15 7 7.5191 10.4221 0.0068 16 14 10.2871 10.2835 0.0064 17 1 11.0034 9.8135 -1.2066 18 1 10.2366 11.7676 0.0082 19 1 11.0037 9.8116 1.2184 20 6 3.5983 -0.7611 0.0048 21 6 4.7689 -1.7101 0.0116 22 7 2.2984 -1.1113 -0.0006 23 6 1.8037 -2.4903 -0.0008 24 6 1.0857 -2.7743 -1.3217 25 6 0.8278 -2.6821 1.1618 26 1 -0.3634 0.0884 1.0238 27 1 -0.3634 0.8425 -0.5885 28 1 -0.3633 -0.9308 -0.4354 29 1 1.9579 2.1237 0.0011 30 1 6.6244 3.2711 0.8911 31 1 6.6253 3.2718 -0.8889 32 1 5.1709 5.2806 -0.8879 33 1 5.1704 5.2792 0.8920 34 1 7.6342 5.5560 0.8935 35 1 7.6353 5.5574 -0.8864 36 1 7.6638 11.3812 0.0072 37 1 5.0559 -1.9404 -1.0143 38 1 5.6093 -1.2467 0.5287 39 1 4.4884 -2.6295 0.5256 40 1 2.6425 -3.1771 0.1118 41 1 1.7468 -2.5327 -2.1539 42 1 0.8138 -3.8288 -1.3679 43 1 0.1848 -2.1638 -1.3841 44 1 0.4594 -3.7079 1.1614 45 1 1.3393 -2.4798 2.1028 46 1 -0.0111 -1.9952 1.0492 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805335710.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:39 Heat of formation + Delta-G solvation = -82.525495 kcal Electronic energy + Delta-G solvation = -24374.545643 eV Core-core repulsion = 20775.888117 eV Total energy + Delta-G solvation = -3598.657526 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.66633 -41.02844 -37.70206 -36.27966 -34.86961 -34.57653 -33.77746 -31.08976 -30.11587 -28.25088 -28.19246 -27.50073 -25.92628 -24.17299 -22.83172 -22.64539 -21.10322 -19.56653 -19.36008 -18.36958 -17.65666 -17.36453 -17.03046 -16.89706 -16.40701 -16.13554 -15.76730 -15.46054 -14.93528 -14.44848 -14.41114 -14.38312 -14.20782 -14.11485 -13.91198 -13.80674 -13.55537 -13.42731 -13.11954 -13.00700 -12.95630 -12.92960 -12.72812 -12.62802 -12.54088 -12.36656 -12.35679 -12.19097 -11.66276 -11.54788 -11.48337 -11.35070 -11.13972 -10.37076 -9.69321 -9.02024 -8.68580 -8.37703 -6.14790 0.41304 1.27283 1.33843 1.41455 1.42090 1.50439 1.72189 2.09541 2.24225 2.27768 2.96471 3.29221 3.59008 3.64762 3.78214 3.84472 3.93905 3.95347 4.00964 4.05152 4.12716 4.20606 4.32748 4.36773 4.51550 4.56203 4.61953 4.67458 4.69515 4.74101 4.76612 4.81131 4.83061 4.91462 5.00903 5.01798 5.08206 5.08593 5.22143 5.25053 5.35014 5.39545 5.52062 5.73732 6.08140 6.17720 6.29847 6.85780 7.04180 8.71514 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.033405 B = 0.001814 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.990868 B =15432.691392 C =16059.966143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.020 3.980 3 C -0.170 4.170 4 C -0.265 4.265 5 C 0.535 3.465 6 O -0.550 6.550 7 O -0.357 6.357 8 C 0.083 3.917 9 C -0.084 4.084 10 C -0.090 4.090 11 S -0.184 6.184 12 C -0.542 4.542 13 H 0.074 0.926 14 C 0.016 3.984 15 N -0.906 5.906 16 Si 0.995 3.005 17 H -0.265 1.265 18 H -0.274 1.274 19 H -0.265 1.265 20 C 0.116 3.884 21 C -0.093 4.093 22 N -0.420 5.420 23 C 0.110 3.890 24 C -0.166 4.166 25 C -0.170 4.170 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.148 0.852 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.272 0.728 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.051 0.949 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.053 0.947 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.161 -32.583 -0.073 36.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 C -0.192 4.192 4 C -0.274 4.274 5 C 0.384 3.616 6 O -0.443 6.443 7 O -0.274 6.274 8 C 0.007 3.993 9 C -0.123 4.123 10 C -0.239 4.239 11 S 0.044 5.956 12 C -0.690 4.690 13 H 0.092 0.908 14 C -0.189 4.189 15 N -0.543 5.543 16 Si 0.817 3.183 17 H -0.189 1.189 18 H -0.198 1.198 19 H -0.190 1.190 20 C -0.004 4.004 21 C -0.150 4.150 22 N -0.097 5.097 23 C 0.010 3.990 24 C -0.223 4.223 25 C -0.227 4.227 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.166 0.834 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.132 0.868 41 H 0.071 0.929 42 H 0.119 0.881 43 H 0.092 0.908 44 H 0.119 0.881 45 H 0.072 0.928 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.076 -32.280 -0.075 36.997 hybrid contribution 2.565 0.504 0.003 2.614 sum -15.511 -31.776 -0.071 35.359 Atomic orbital electron populations 1.20727 0.85317 1.04643 1.03938 1.20576 0.95106 0.84662 1.08475 1.21991 0.90105 0.98926 1.08227 1.19502 0.91438 0.91997 1.24417 1.20545 0.88756 0.80665 0.71645 1.90753 1.30290 1.73693 1.49556 1.86534 1.37063 1.19512 1.84248 1.22980 0.83463 0.90158 1.02690 1.21080 0.96331 0.90569 1.04270 1.23057 0.99986 0.97221 1.03668 1.84631 1.14630 0.99250 1.97067 1.23032 0.91794 0.94989 1.59183 0.90764 1.26080 1.03093 0.96098 0.93672 1.70145 1.32505 1.03845 1.47763 0.85048 0.76745 0.77171 0.79338 1.18949 1.19832 1.18962 1.20752 0.86447 0.92947 1.00219 1.20612 0.93157 0.97114 1.04114 1.44098 1.03850 1.07664 1.54040 1.21934 0.99646 0.78820 0.98567 1.22300 1.00978 1.04479 0.94525 1.22352 0.99261 1.04974 0.96123 0.89695 0.89573 0.89160 0.83441 0.91065 0.91062 0.90408 0.90412 0.91309 0.91317 0.91876 0.89522 0.90295 0.88597 0.86834 0.92940 0.88112 0.90788 0.88130 0.92763 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.81 8.49 71.24 0.60 -0.20 16 2 C 0.02 0.33 6.37 40.97 0.26 0.59 16 3 C -0.17 -4.02 10.89 23.63 0.26 -3.77 16 4 C -0.27 -7.35 6.33 -18.82 -0.12 -7.47 16 5 C 0.53 17.63 7.95 70.15 0.56 18.19 16 6 O -0.55 -19.60 14.67 19.67 0.29 -19.32 16 7 O -0.36 -12.00 10.12 -57.04 -0.58 -12.57 16 8 C 0.08 2.70 5.48 71.98 0.39 3.10 16 9 C -0.08 -2.98 5.60 30.59 0.17 -2.81 16 10 C -0.09 -3.80 5.67 71.98 0.41 -3.40 16 11 S -0.18 -10.06 21.44 -56.49 -1.21 -11.27 16 12 C -0.54 -31.95 9.50 67.95 0.65 -31.31 16 13 H 0.07 4.20 7.80 -2.91 -0.02 4.18 16 14 C 0.02 0.91 5.49 84.86 0.47 1.37 16 15 N -0.91 -55.40 13.22 21.65 0.29 -55.11 16 16 Si 1.00 44.64 29.55 68.60 2.03 46.67 16 17 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 20 C 0.12 2.47 6.93 42.04 0.29 2.76 16 21 C -0.09 -1.57 9.40 71.23 0.67 -0.90 16 22 N -0.42 -6.54 2.56 -472.42 -1.21 -7.75 16 23 C 0.11 0.81 3.30 44.99 0.15 0.96 16 24 C -0.17 -0.81 9.20 71.98 0.66 -0.15 16 25 C -0.17 -0.78 9.06 71.98 0.65 -0.13 16 26 H 0.08 0.62 7.90 -2.39 -0.02 0.60 16 27 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.09 0.46 4.17 -2.39 -0.01 0.45 16 29 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 30 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 31 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.07 2.82 8.14 -2.40 -0.02 2.80 16 35 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.74 6.53 -2.38 -0.02 1.72 16 39 H 0.10 0.96 6.88 -2.39 -0.02 0.94 16 40 H 0.11 0.57 6.44 -2.39 -0.02 0.56 16 41 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 43 H 0.07 0.33 5.52 -2.38 -0.01 0.31 16 44 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 45 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.08 0.33 4.93 -2.39 -0.01 0.32 16 Total: -1.00 -75.99 386.78 6.64 -69.34 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.97 Total: 13.16 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: 6.07 Total: -23.15 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: -0.93 Total: -62.86 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.29 Total: -31.89 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: -10.06 SS G_CDS: -1.21 Total: -11.27 kcal Total: -75.99 6.64 -69.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805335710.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.181 kcal (2) G-P(sol) polarization free energy of solvation -75.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds