Wall clock time and date at job start Tue Mar 31 2020 14:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 6 6 N 1.29028 * 124.91991 * 60.00024 * 5 2 1 7 7 C 1.31778 * 117.12837 * 179.97438 * 6 5 2 8 8 C 1.50702 * 122.74764 * 180.02562 * 7 6 5 9 9 O 1.45202 * 109.47162 * 179.97438 * 8 7 6 10 10 C 1.34223 * 117.00103 * 179.97438 * 9 8 7 11 11 O 1.20823 * 120.00172 * 0.02562 * 10 9 8 12 12 C 1.50707 * 120.00068 * 180.02562 * 10 9 8 13 13 C 1.52993 * 109.47039 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.46753 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.46637 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46544 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00274 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99338 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99313 * 180.02562 * 18 16 15 20 20 Si 1.86789 * 120.00446 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.47282 * 89.99824 * 20 18 16 22 22 H 1.48497 * 109.47308 * 210.00151 * 20 18 16 23 23 H 1.48503 * 109.47325 * 330.00218 * 20 18 16 24 24 C 1.33636 * 114.50124 * 359.97438 * 7 6 5 25 25 S 1.70982 * 124.91863 * 239.69654 * 5 2 1 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 35 35 H 1.09001 * 109.47317 * 299.99703 * 8 7 6 36 36 H 1.09006 * 109.47360 * 59.99900 * 8 7 6 37 37 H 1.09006 * 109.46912 * 300.00749 * 12 10 9 38 38 H 1.08995 * 109.46785 * 59.99785 * 12 10 9 39 39 H 1.09002 * 109.46887 * 299.99677 * 13 12 10 40 40 H 1.08998 * 109.47454 * 60.00321 * 13 12 10 41 41 H 1.09002 * 109.47070 * 299.99454 * 14 13 12 42 42 H 1.08998 * 109.46970 * 59.99913 * 14 13 12 43 43 H 1.08993 * 109.47419 * 300.00002 * 15 14 13 44 44 H 1.08998 * 109.47189 * 60.00442 * 15 14 13 45 45 H 0.97001 * 119.99723 * 180.02562 * 19 18 16 46 46 H 1.08000 * 126.03728 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7104 -1.2305 6 7 1.7798 -0.3533 -2.4443 7 6 2.2996 -1.0875 -3.4072 8 6 2.0867 -0.7854 -4.8682 9 8 2.7853 -1.7715 -5.6732 10 6 2.6955 -1.6442 -7.0063 11 8 2.0547 -0.7385 -7.4849 12 6 3.3938 -2.6309 -7.9063 13 6 3.1332 -2.2611 -9.3679 14 6 3.8417 -3.2633 -10.2815 15 6 3.5806 -2.8939 -11.7431 16 6 4.2789 -3.8806 -12.6430 17 1 4.8520 -4.6899 -12.2153 18 6 4.1870 -3.7495 -14.0125 19 7 4.7961 -4.6109 -14.7979 20 14 3.1964 -2.3493 -14.7524 21 1 4.0766 -1.1693 -14.9477 22 1 2.6405 -2.7743 -16.0621 23 1 2.0846 -1.9910 -13.8355 24 6 3.0319 -2.1214 -2.9820 25 16 3.0255 -2.1021 -1.2202 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 -1.7489 1.2492 33 1 3.1300 -0.7217 1.2490 34 1 1.6767 -0.2075 2.1393 35 1 1.0211 -0.8198 -5.0949 36 1 2.4743 0.2081 -5.0941 37 1 4.4659 -2.6053 -7.7109 38 1 3.0129 -3.6333 -7.7112 39 1 2.0612 -2.2865 -9.5634 40 1 3.5145 -1.2587 -9.5627 41 1 4.9138 -3.2383 -10.0861 42 1 3.4600 -4.2655 -10.0866 43 1 2.5085 -2.9191 -11.9383 44 1 3.9620 -1.8916 -11.9383 45 1 4.7318 -4.5185 -15.7613 46 1 3.5408 -2.8395 -3.6077 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805695388.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:01 Heat of formation + Delta-G solvation = -76.724728 kcal Electronic energy + Delta-G solvation = -23848.530407 eV Core-core repulsion = 20250.124421 eV Total energy + Delta-G solvation = -3598.405986 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.85883 -40.19816 -37.48716 -36.62702 -35.13823 -32.67114 -31.30191 -30.25327 -27.98277 -27.86005 -27.76486 -26.23627 -25.02867 -22.58031 -20.68815 -20.51524 -20.10680 -19.66362 -18.06517 -17.36650 -16.94610 -16.62818 -16.54047 -15.77102 -15.55312 -14.96659 -14.62605 -14.42593 -14.25723 -14.19269 -13.57682 -13.41854 -13.08356 -12.77276 -12.72447 -12.60053 -12.44705 -12.25033 -12.20571 -12.03085 -11.80433 -11.61379 -11.57398 -11.46311 -11.18457 -11.05095 -10.82127 -10.60667 -10.57145 -10.00877 -9.89466 -9.75889 -9.69886 -9.55936 -9.15350 -9.10320 -8.51168 -6.02261 -4.00057 0.33450 0.95963 1.35633 2.16344 2.30134 2.33015 3.33787 3.41070 3.46299 3.55180 4.16060 4.34489 4.35708 4.48261 4.65881 4.71379 4.85510 4.97428 4.98691 5.01322 5.08819 5.09134 5.16697 5.23169 5.29887 5.32422 5.34407 5.37295 5.39705 5.52629 5.62541 5.65476 5.77704 5.82731 5.92193 6.01867 6.25293 6.31929 6.59036 6.73135 6.93366 7.30444 7.33679 7.46438 7.67620 7.82365 8.56003 9.02613 9.60820 11.11173 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.038567 B = 0.001652 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.827326 B =16948.525816 C =17456.784362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.011 3.989 3 C -0.135 4.135 4 C -0.154 4.154 5 C 0.063 3.937 6 N -0.464 5.464 7 C 0.060 3.940 8 C 0.146 3.854 9 O -0.360 6.360 10 C 0.464 3.536 11 O -0.502 6.502 12 C -0.110 4.110 13 C -0.112 4.112 14 C -0.102 4.102 15 C -0.015 4.015 16 C -0.521 4.521 17 H 0.071 0.929 18 C 0.065 3.935 19 N -0.905 5.905 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 C -0.237 4.237 25 S 0.127 5.873 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.016 0.984 44 H 0.012 0.988 45 H 0.262 0.738 46 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.890 8.281 36.965 38.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.007 3.993 3 C -0.194 4.194 4 C -0.212 4.212 5 C -0.216 4.216 6 N -0.178 5.178 7 C -0.072 4.072 8 C 0.070 3.930 9 O -0.277 6.277 10 C 0.307 3.693 11 O -0.389 6.389 12 C -0.148 4.148 13 C -0.150 4.150 14 C -0.140 4.140 15 C -0.053 4.053 16 C -0.559 4.559 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.376 4.376 25 S 0.384 5.616 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.034 0.966 44 H 0.030 0.970 45 H 0.072 0.928 46 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -5.924 8.337 37.322 38.698 hybrid contribution -0.607 0.893 -1.515 1.861 sum -6.532 9.230 35.807 37.550 Atomic orbital electron populations 1.21851 0.92093 1.02469 1.02955 1.19256 0.96738 0.95242 0.88081 1.21850 1.01208 0.93359 1.02959 1.22036 1.01749 1.00754 0.96702 1.27054 1.00470 0.98036 0.96020 1.65705 1.23456 1.30252 0.98408 1.19638 0.98877 0.93604 0.95038 1.20872 0.97677 0.91231 0.83268 1.86405 1.68688 1.52824 1.19818 1.24206 0.78806 0.85611 0.80654 1.90688 1.39094 1.33359 1.75736 1.21598 1.01690 0.97573 0.93896 1.21620 1.02123 1.00947 0.90260 1.21478 0.99253 0.97245 0.96012 1.19578 0.96880 0.96832 0.91993 1.21173 1.31499 1.12530 0.90683 0.91047 1.25042 0.95249 0.96005 0.97280 1.69924 1.43930 1.36547 1.04003 0.86774 0.81193 0.82778 0.78534 1.20317 1.21423 1.18940 1.26936 1.08165 1.05364 0.97091 1.83997 1.47132 1.27208 1.03288 0.91367 0.91482 0.92437 0.91484 0.92442 0.91362 0.91735 0.91744 0.90537 0.89137 0.89140 0.87602 0.87598 0.91464 0.91465 0.92566 0.92541 0.96555 0.96998 0.92792 0.79724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.76 8.45 37.16 0.31 -0.45 16 2 C 0.01 0.06 0.99 -155.66 -0.15 -0.09 16 3 C -0.14 -0.76 8.45 37.15 0.31 -0.45 16 4 C -0.15 -0.64 7.54 37.16 0.28 -0.36 16 5 C 0.06 0.53 5.78 -13.46 -0.08 0.46 16 6 N -0.46 -4.93 10.51 -8.06 -0.08 -5.02 16 7 C 0.06 0.64 6.74 -84.23 -0.57 0.07 16 8 C 0.15 1.63 6.07 36.01 0.22 1.85 16 9 O -0.36 -4.21 9.14 -39.24 -0.36 -4.57 16 10 C 0.46 6.18 7.96 36.01 0.29 6.47 16 11 O -0.50 -8.24 15.73 -18.75 -0.29 -8.53 16 12 C -0.11 -1.34 5.81 -27.88 -0.16 -1.50 16 13 C -0.11 -1.78 4.50 -26.73 -0.12 -1.90 16 14 C -0.10 -1.94 5.15 -26.73 -0.14 -2.08 16 15 C -0.02 -0.37 4.04 -27.88 -0.11 -0.49 16 16 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 17 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 18 C 0.07 1.93 5.47 -17.81 -0.10 1.83 16 19 N -0.90 -28.20 13.96 55.43 0.77 -27.42 16 20 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 24 C -0.24 -2.20 10.56 29.12 0.31 -1.89 16 25 S 0.13 0.95 21.57 -107.50 -2.32 -1.37 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.26 7.93 -51.93 -0.41 -0.15 16 33 H 0.06 0.26 7.92 -51.93 -0.41 -0.15 16 34 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.09 1.02 8.13 -51.93 -0.42 0.59 16 36 H 0.09 1.02 8.13 -51.93 -0.42 0.59 16 37 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 40 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 44 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.19 1.53 7.56 -52.49 -0.40 1.13 16 LS Contribution 392.82 15.07 5.92 5.92 Total: -1.00 -33.30 392.82 -8.98 -42.29 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -7.91 Total: -4.95 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -0.04 Total: -13.86 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.69 Total: -32.44 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.65 Total: -13.10 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.32 Total: -1.37 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.30 -8.98 -42.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805695388.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.436 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds