Wall clock time and date at job start Tue Mar 31 2020 14:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 6 6 N 1.29028 * 124.91991 * 60.00024 * 5 2 1 7 7 C 1.31778 * 117.12837 * 179.97438 * 6 5 2 8 8 C 1.50702 * 122.74764 * 180.02562 * 7 6 5 9 9 O 1.45202 * 109.47162 * 179.97438 * 8 7 6 10 10 C 1.34223 * 117.00103 * 179.97438 * 9 8 7 11 11 O 1.20823 * 120.00172 * 0.02562 * 10 9 8 12 12 C 1.50707 * 120.00068 * 180.02562 * 10 9 8 13 13 C 1.52993 * 109.47039 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.46753 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.46637 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46544 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00274 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99338 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99313 * 180.02562 * 18 16 15 20 20 Si 1.86789 * 120.00446 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.47282 * 89.99824 * 20 18 16 22 22 H 1.48497 * 109.47308 * 210.00151 * 20 18 16 23 23 H 1.48503 * 109.47325 * 330.00218 * 20 18 16 24 24 C 1.33636 * 114.50124 * 359.97438 * 7 6 5 25 25 S 1.70982 * 124.91863 * 239.69654 * 5 2 1 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 35 35 H 1.09001 * 109.47317 * 299.99703 * 8 7 6 36 36 H 1.09006 * 109.47360 * 59.99900 * 8 7 6 37 37 H 1.09006 * 109.46912 * 300.00749 * 12 10 9 38 38 H 1.08995 * 109.46785 * 59.99785 * 12 10 9 39 39 H 1.09002 * 109.46887 * 299.99677 * 13 12 10 40 40 H 1.08998 * 109.47454 * 60.00321 * 13 12 10 41 41 H 1.09002 * 109.47070 * 299.99454 * 14 13 12 42 42 H 1.08998 * 109.46970 * 59.99913 * 14 13 12 43 43 H 1.08993 * 109.47419 * 300.00002 * 15 14 13 44 44 H 1.08998 * 109.47189 * 60.00442 * 15 14 13 45 45 H 0.97001 * 119.99723 * 180.02562 * 19 18 16 46 46 H 1.08000 * 126.03728 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7104 -1.2305 6 7 1.7798 -0.3533 -2.4443 7 6 2.2996 -1.0875 -3.4072 8 6 2.0867 -0.7854 -4.8682 9 8 2.7853 -1.7715 -5.6732 10 6 2.6955 -1.6442 -7.0063 11 8 2.0547 -0.7385 -7.4849 12 6 3.3938 -2.6309 -7.9063 13 6 3.1332 -2.2611 -9.3679 14 6 3.8417 -3.2633 -10.2815 15 6 3.5806 -2.8939 -11.7431 16 6 4.2789 -3.8806 -12.6430 17 1 4.8520 -4.6899 -12.2153 18 6 4.1870 -3.7495 -14.0125 19 7 4.7961 -4.6109 -14.7979 20 14 3.1964 -2.3493 -14.7524 21 1 4.0766 -1.1693 -14.9477 22 1 2.6405 -2.7743 -16.0621 23 1 2.0846 -1.9910 -13.8355 24 6 3.0319 -2.1214 -2.9820 25 16 3.0255 -2.1021 -1.2202 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 -1.7489 1.2492 33 1 3.1300 -0.7217 1.2490 34 1 1.6767 -0.2075 2.1393 35 1 1.0211 -0.8198 -5.0949 36 1 2.4743 0.2081 -5.0941 37 1 4.4659 -2.6053 -7.7109 38 1 3.0129 -3.6333 -7.7112 39 1 2.0612 -2.2865 -9.5634 40 1 3.5145 -1.2587 -9.5627 41 1 4.9138 -3.2383 -10.0861 42 1 3.4600 -4.2655 -10.0866 43 1 2.5085 -2.9191 -11.9383 44 1 3.9620 -1.8916 -11.9383 45 1 4.7318 -4.5185 -15.7613 46 1 3.5408 -2.8395 -3.6077 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805695388.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:01 Heat of formation + Delta-G solvation = -94.910196 kcal Electronic energy + Delta-G solvation = -23849.318988 eV Core-core repulsion = 20250.124421 eV Total energy + Delta-G solvation = -3599.194567 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.78809 -40.99433 -38.20574 -37.46183 -36.66315 -34.65351 -32.36188 -31.63461 -28.80231 -28.33232 -28.19888 -27.69652 -25.83125 -24.10887 -21.98250 -21.53511 -21.22465 -20.30225 -18.96625 -18.80000 -18.16115 -17.94460 -17.47714 -16.48647 -16.47229 -16.26959 -15.91682 -15.24164 -15.08503 -15.05021 -14.76486 -14.38925 -14.19215 -13.99333 -13.81530 -13.76596 -13.47364 -13.10659 -13.10328 -12.88091 -12.62403 -12.52276 -12.38401 -12.26370 -12.14341 -12.09344 -11.91930 -11.91638 -11.76618 -11.74875 -11.39615 -11.33395 -11.24392 -10.75497 -10.65850 -10.41495 -9.77426 -8.29224 -6.32343 -0.33000 0.33670 0.69004 1.12191 1.35260 1.35988 1.37047 1.49229 1.60156 2.36169 2.92553 3.06427 3.51649 3.73721 3.88182 3.93553 3.93653 4.05175 4.07509 4.11840 4.12567 4.36559 4.44057 4.60296 4.60779 4.69980 4.73148 4.74068 4.81045 4.83229 4.86853 4.95507 4.96106 5.04642 5.09838 5.16649 5.19937 5.24634 5.33613 5.34050 5.38336 5.59964 5.65285 5.68839 6.29930 6.61037 6.66858 6.76114 7.32516 8.87342 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.038567 B = 0.001652 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.827326 B =16948.525816 C =17456.784362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.007 3.993 3 C -0.132 4.132 4 C -0.153 4.153 5 C 0.054 3.946 6 N -0.492 5.492 7 C 0.041 3.959 8 C 0.149 3.851 9 O -0.350 6.350 10 C 0.470 3.530 11 O -0.538 6.538 12 C -0.103 4.103 13 C -0.103 4.103 14 C -0.094 4.094 15 C -0.018 4.018 16 C -0.531 4.531 17 H 0.037 0.963 18 C 0.004 3.996 19 N -0.951 5.951 20 Si 0.948 3.052 21 H -0.268 1.268 22 H -0.283 1.283 23 H -0.251 1.251 24 C -0.248 4.248 25 S 0.175 5.825 26 H 0.048 0.952 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.016 0.984 44 H 0.014 0.986 45 H 0.266 0.734 46 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.307 8.912 39.399 40.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.003 3.997 3 C -0.191 4.191 4 C -0.211 4.211 5 C -0.224 4.224 6 N -0.207 5.207 7 C -0.090 4.090 8 C 0.072 3.928 9 O -0.266 6.266 10 C 0.315 3.685 11 O -0.427 6.427 12 C -0.140 4.140 13 C -0.141 4.141 14 C -0.132 4.132 15 C -0.055 4.055 16 C -0.569 4.569 17 H 0.056 0.944 18 C -0.193 4.193 19 N -0.592 5.592 20 Si 0.771 3.229 21 H -0.193 1.193 22 H -0.209 1.209 23 H -0.174 1.174 24 C -0.388 4.388 25 S 0.433 5.567 26 H 0.067 0.933 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.033 0.967 45 H 0.074 0.926 46 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -6.333 8.957 39.795 41.279 hybrid contribution -0.424 0.622 -2.176 2.303 sum -6.757 9.579 37.619 39.403 Atomic orbital electron populations 1.21835 0.91906 1.02359 1.03010 1.19444 0.96910 0.95419 0.87913 1.21834 1.01060 0.93211 1.03014 1.22053 1.01904 1.00849 0.96254 1.27595 1.00173 0.98500 0.96159 1.65708 1.24601 1.31199 0.99202 1.19597 1.00132 0.94595 0.94719 1.20834 0.97234 0.90836 0.83899 1.86389 1.68396 1.52750 1.19112 1.24362 0.77997 0.85052 0.81092 1.90683 1.40771 1.34889 1.76347 1.21521 1.03175 0.98163 0.91101 1.21406 1.01027 0.99516 0.92126 1.21331 1.00036 0.98303 0.93530 1.19583 0.96033 0.95548 0.94360 1.21563 1.31158 1.12550 0.91677 0.94447 1.25997 0.96536 0.98851 0.97924 1.70068 1.45830 1.38785 1.04489 0.85694 0.79978 0.79352 0.77849 1.19274 1.20876 1.17433 1.27153 1.07734 1.05037 0.98828 1.83780 1.45854 1.25869 1.01246 0.93290 0.89430 0.92614 0.89433 0.92614 0.93285 0.91490 0.91499 0.88673 0.89697 0.89693 0.85199 0.85218 0.92269 0.92185 0.92113 0.92139 0.96605 0.96716 0.92560 0.78892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 8.45 71.98 0.61 -0.74 16 2 C 0.01 0.07 0.99 -52.93 -0.05 0.02 16 3 C -0.13 -1.35 8.45 71.98 0.61 -0.74 16 4 C -0.15 -0.88 7.54 71.98 0.54 -0.34 16 5 C 0.05 0.86 5.78 88.52 0.51 1.37 16 6 N -0.49 -10.44 10.51 -179.40 -1.89 -12.33 16 7 C 0.04 0.86 6.74 41.52 0.28 1.14 16 8 C 0.15 3.33 6.07 71.24 0.43 3.76 16 9 O -0.35 -7.79 9.14 -51.35 -0.47 -8.26 16 10 C 0.47 11.90 7.96 71.24 0.57 12.46 16 11 O -0.54 -17.38 15.73 21.97 0.35 -17.03 16 12 C -0.10 -2.24 5.81 29.85 0.17 -2.07 16 13 C -0.10 -3.10 4.50 30.59 0.14 -2.96 16 14 C -0.09 -3.46 5.15 30.60 0.16 -3.30 16 15 C -0.02 -0.84 4.04 29.85 0.12 -0.72 16 16 C -0.53 -30.95 9.66 25.60 0.25 -30.70 16 17 H 0.04 2.36 7.99 -2.91 -0.02 2.33 16 18 C 0.00 0.21 5.47 84.65 0.46 0.67 16 19 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 20 Si 0.95 45.50 27.47 68.60 1.88 47.39 16 21 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 22 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 23 H -0.25 -11.37 6.54 99.48 0.65 -10.71 16 24 C -0.25 -4.34 10.56 66.78 0.71 -3.63 16 25 S 0.18 2.31 21.57 -56.49 -1.22 1.10 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.37 7.93 -2.39 -0.02 0.35 16 33 H 0.07 0.37 7.92 -2.39 -0.02 0.35 16 34 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.08 1.96 8.13 -2.39 -0.02 1.94 16 36 H 0.08 1.96 8.13 -2.38 -0.02 1.94 16 37 H 0.13 2.29 8.14 -2.38 -0.02 2.27 16 38 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.06 1.88 8.10 -2.39 -0.02 1.86 16 40 H 0.06 1.89 8.10 -2.39 -0.02 1.87 16 41 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.02 0.74 7.20 -2.39 -0.02 0.72 16 44 H 0.01 0.68 7.57 -2.39 -0.02 0.66 16 45 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 46 H 0.19 2.89 7.56 -2.91 -0.02 2.86 16 Total: -1.00 -72.91 392.82 5.34 -67.57 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 0.88 Total: 7.35 kcal Atomic # 6 Polarization: -31.27 SS G_CDS: 5.50 Total: -25.77 kcal Atomic # 7 Polarization: -70.75 SS G_CDS: -1.59 Total: -72.34 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.12 Total: -25.29 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.88 Total: 47.39 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -1.22 Total: 1.10 kcal Total: -72.91 5.34 -67.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805695388.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.342 kcal (2) G-P(sol) polarization free energy of solvation -72.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds