Wall clock time and date at job start Tue Mar 31 2020 14:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.46921 * 2 1 4 4 C 1.53000 * 109.47144 * 239.99881 * 2 1 3 5 5 C 1.50701 * 109.46996 * 119.99726 * 2 1 3 6 6 N 1.29028 * 124.91855 * 60.00118 * 5 2 1 7 7 C 1.31771 * 117.12878 * 180.02562 * 6 5 2 8 8 C 1.33644 * 114.50041 * 359.97438 * 7 6 5 9 9 C 1.50700 * 126.03938 * 180.02562 * 8 7 6 10 10 O 1.45205 * 109.46846 * 90.02534 * 9 8 7 11 11 C 1.34228 * 116.99529 * 179.97438 * 10 9 8 12 12 O 1.20830 * 120.00633 * 0.02562 * 11 10 9 13 13 C 1.50707 * 119.99792 * 180.02562 * 11 10 9 14 14 C 1.52999 * 109.46967 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46760 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47134 * 179.97438 * 15 14 13 17 17 C 1.50694 * 109.47207 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00355 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99975 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00155 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00010 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47181 * 59.99927 * 21 19 17 23 23 H 1.48497 * 109.47418 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47427 * 299.99669 * 21 19 17 25 25 S 1.70979 * 124.91569 * 240.00427 * 5 2 1 26 26 H 1.09002 * 109.47687 * 300.00339 * 1 2 3 27 27 H 1.09003 * 109.47373 * 60.00151 * 1 2 3 28 28 H 1.09004 * 109.47444 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47194 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47479 * 299.99539 * 3 2 1 31 31 H 1.08999 * 109.47717 * 59.99938 * 3 2 1 32 32 H 1.08996 * 109.47222 * 299.99722 * 4 2 1 33 33 H 1.08990 * 109.47296 * 60.00345 * 4 2 1 34 34 H 1.09001 * 109.46779 * 180.02562 * 4 2 1 35 35 H 1.08002 * 122.75353 * 180.27327 * 7 6 5 36 36 H 1.08995 * 109.47049 * 210.03076 * 9 8 7 37 37 H 1.09002 * 109.47032 * 330.03249 * 9 8 7 38 38 H 1.09001 * 109.46725 * 300.00126 * 13 11 10 39 39 H 1.08997 * 109.46783 * 59.99888 * 13 11 10 40 40 H 1.08993 * 109.47102 * 299.99751 * 14 13 11 41 41 H 1.09001 * 109.47261 * 60.00378 * 14 13 11 42 42 H 1.08997 * 109.47625 * 299.99991 * 15 14 13 43 43 H 1.09001 * 109.46834 * 60.00227 * 15 14 13 44 44 H 1.09006 * 109.47038 * 300.00228 * 16 15 14 45 45 H 1.09002 * 109.47431 * 59.99687 * 16 15 14 46 46 H 0.96997 * 120.00315 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 1.7797 -1.9402 1.5282 7 6 2.2986 -2.4066 2.6460 8 6 3.0302 -1.5210 3.3292 9 6 3.7393 -1.7757 4.6343 10 8 5.0850 -2.2522 4.3690 11 6 5.8550 -2.5272 5.4335 12 8 5.4189 -2.3754 6.5501 13 6 7.2635 -3.0255 5.2361 14 6 7.9170 -3.2607 6.5993 15 6 9.3468 -3.7672 6.3988 16 6 10.0006 -4.0018 7.7620 17 6 11.4091 -4.5000 7.5646 18 1 11.7991 -4.6354 6.5666 19 6 12.1998 -4.7831 8.6580 20 7 11.7252 -4.6178 9.8733 21 14 13.9455 -5.4014 8.4133 22 1 14.7273 -4.3903 7.6572 23 1 14.5801 -5.6290 9.7364 24 1 13.9170 -6.6759 7.6517 25 16 3.0193 -0.0033 2.4343 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7216 -1.2489 35 1 2.1493 -3.4227 2.9802 36 1 3.7880 -0.8502 5.2080 37 1 3.1933 -2.5279 5.2038 38 1 7.2429 -3.9611 4.6771 39 1 7.8370 -2.2832 4.6810 40 1 7.9376 -2.3254 7.1586 41 1 7.3434 -4.0033 7.1540 42 1 9.3260 -4.7026 5.8397 43 1 9.9207 -3.0250 5.8440 44 1 10.0216 -3.0661 8.3208 45 1 9.4268 -4.7438 8.3174 46 1 12.2816 -4.8166 10.6425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805931992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:04 Heat of formation + Delta-G solvation = -81.505777 kcal Electronic energy + Delta-G solvation = -23712.392712 eV Core-core repulsion = 20113.779404 eV Total energy + Delta-G solvation = -3598.613308 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.63792 -40.21060 -37.39241 -36.67020 -34.99706 -32.72604 -31.90323 -29.90847 -27.98426 -27.76123 -27.32967 -25.86401 -24.49765 -22.70462 -21.52546 -20.62061 -20.04541 -19.22067 -18.28283 -17.60642 -16.73921 -16.45211 -16.16755 -15.65579 -15.31166 -14.87298 -14.79551 -14.49214 -14.37991 -14.10324 -13.67577 -13.43110 -12.96992 -12.79514 -12.68900 -12.52410 -12.34389 -12.19718 -12.00108 -11.73593 -11.72337 -11.68349 -11.55391 -11.47693 -11.00589 -10.86040 -10.62309 -10.59345 -10.48824 -10.46688 -9.94899 -9.68014 -9.65884 -9.31699 -9.22282 -9.03424 -8.31798 -5.96713 -3.99422 0.17857 0.88628 1.34992 2.22315 2.28361 2.82754 3.34896 3.39331 3.41595 3.53272 4.21791 4.30345 4.35550 4.47993 4.51601 4.59768 4.76536 4.82398 5.02987 5.05562 5.10430 5.23918 5.23992 5.24860 5.29990 5.34004 5.37483 5.38714 5.40926 5.55241 5.69167 5.69754 5.78050 5.85265 6.03862 6.16666 6.30408 6.45409 6.75188 6.93179 7.15087 7.31886 7.71175 7.74041 7.86170 8.03779 8.45555 9.07841 9.64353 11.14512 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.032093 B = 0.001618 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.248307 B =17304.887540 C =17651.290514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.009 3.991 3 C -0.156 4.156 4 C -0.135 4.135 5 C 0.063 3.937 6 N -0.473 5.473 7 C 0.069 3.931 8 C -0.244 4.244 9 C 0.147 3.853 10 O -0.357 6.357 11 C 0.461 3.539 12 O -0.503 6.503 13 C -0.111 4.111 14 C -0.108 4.108 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.522 4.522 18 H 0.054 0.946 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 S 0.151 5.849 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.178 0.822 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.049 0.951 43 H 0.049 0.951 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.776 12.002 -22.169 35.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.005 3.995 3 C -0.214 4.214 4 C -0.193 4.193 5 C -0.214 4.214 6 N -0.186 5.186 7 C -0.084 4.084 8 C -0.365 4.365 9 C 0.071 3.929 10 O -0.275 6.275 11 C 0.304 3.696 12 O -0.390 6.390 13 C -0.149 4.149 14 C -0.146 4.146 15 C -0.148 4.148 16 C -0.017 4.017 17 C -0.561 4.561 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 S 0.408 5.592 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.195 0.805 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.035 0.965 45 H 0.035 0.965 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -24.774 12.735 -21.835 35.394 hybrid contribution 0.764 -1.286 0.449 1.562 sum -24.011 11.449 -21.386 34.131 Atomic orbital electron populations 1.21845 0.92085 1.03166 1.02198 1.19282 0.96720 0.94047 0.89465 1.22052 1.01890 0.94136 1.03338 1.21846 1.01340 1.01069 0.95093 1.27238 0.99861 0.93596 1.00735 1.66228 1.23590 1.11820 1.17001 1.21798 0.95804 1.01016 0.89743 1.25599 1.08900 0.97871 1.04170 1.20946 0.80243 1.00914 0.90839 1.86617 1.25275 1.77077 1.38575 1.24278 0.88821 0.74044 0.82414 1.90684 1.74142 1.48647 1.25532 1.21634 0.87315 1.03312 1.02594 1.21586 0.97432 1.02526 0.93057 1.21653 0.92315 0.99417 1.01392 1.19094 0.94856 0.97052 0.90702 1.21238 0.98255 1.44103 0.92467 0.92740 1.25036 0.98414 0.95768 0.95288 1.69958 1.36790 1.48999 0.97680 0.86660 0.84792 0.79350 0.77189 1.20281 1.21310 1.20272 1.84031 1.46466 1.13530 1.15136 0.92479 0.91465 0.91376 0.91654 0.90477 0.91759 0.91366 0.91461 0.92343 0.80511 0.89909 0.88912 0.87782 0.87815 0.91508 0.91493 0.93177 0.93193 0.96541 0.96530 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.73 8.45 37.16 0.31 -0.41 16 2 C 0.01 0.05 0.99 -155.66 -0.15 -0.10 16 3 C -0.16 -0.72 7.54 37.16 0.28 -0.44 16 4 C -0.13 -0.78 8.45 37.16 0.31 -0.47 16 5 C 0.06 0.54 5.78 -13.46 -0.08 0.46 16 6 N -0.47 -4.79 10.53 -11.86 -0.12 -4.92 16 7 C 0.07 0.67 11.25 -19.19 -0.22 0.45 16 8 C -0.24 -2.39 6.24 -35.92 -0.22 -2.61 16 9 C 0.15 1.53 5.99 36.01 0.22 1.74 16 10 O -0.36 -4.45 10.20 -39.25 -0.40 -4.85 16 11 C 0.46 6.47 7.96 36.01 0.29 6.76 16 12 O -0.50 -8.48 15.73 -18.75 -0.29 -8.77 16 13 C -0.11 -1.47 5.81 -27.88 -0.16 -1.63 16 14 C -0.11 -1.86 4.50 -26.73 -0.12 -1.98 16 15 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 16 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 17 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 21 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 S 0.15 1.27 21.57 -107.50 -2.32 -1.05 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.31 7.92 -51.93 -0.41 -0.10 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.28 7.92 -51.93 -0.41 -0.13 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 37 H 0.09 0.89 8.13 -51.93 -0.42 0.47 16 38 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 41 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 398.09 15.07 6.00 6.00 Total: -1.00 -33.13 398.09 -9.63 -42.76 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -7.97 Total: -5.48 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -0.23 Total: -13.91 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.61 Total: -31.48 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.70 Total: -13.62 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.32 Total: -1.05 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.13 -9.63 -42.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805931992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.750 kcal (2) G-P(sol) polarization free energy of solvation -33.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds