Wall clock time and date at job start Tue Mar 31 2020 14:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.46921 * 2 1 4 4 C 1.53000 * 109.47144 * 239.99881 * 2 1 3 5 5 C 1.50701 * 109.46996 * 119.99726 * 2 1 3 6 6 N 1.29028 * 124.91855 * 60.00118 * 5 2 1 7 7 C 1.31771 * 117.12878 * 180.02562 * 6 5 2 8 8 C 1.33644 * 114.50041 * 359.97438 * 7 6 5 9 9 C 1.50700 * 126.03938 * 180.02562 * 8 7 6 10 10 O 1.45205 * 109.46846 * 90.02534 * 9 8 7 11 11 C 1.34228 * 116.99529 * 179.97438 * 10 9 8 12 12 O 1.20830 * 120.00633 * 0.02562 * 11 10 9 13 13 C 1.50707 * 119.99792 * 180.02562 * 11 10 9 14 14 C 1.52999 * 109.46967 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46760 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47134 * 179.97438 * 15 14 13 17 17 C 1.50694 * 109.47207 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00355 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99975 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00155 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00010 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47181 * 59.99927 * 21 19 17 23 23 H 1.48497 * 109.47418 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47427 * 299.99669 * 21 19 17 25 25 S 1.70979 * 124.91569 * 240.00427 * 5 2 1 26 26 H 1.09002 * 109.47687 * 300.00339 * 1 2 3 27 27 H 1.09003 * 109.47373 * 60.00151 * 1 2 3 28 28 H 1.09004 * 109.47444 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47194 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47479 * 299.99539 * 3 2 1 31 31 H 1.08999 * 109.47717 * 59.99938 * 3 2 1 32 32 H 1.08996 * 109.47222 * 299.99722 * 4 2 1 33 33 H 1.08990 * 109.47296 * 60.00345 * 4 2 1 34 34 H 1.09001 * 109.46779 * 180.02562 * 4 2 1 35 35 H 1.08002 * 122.75353 * 180.27327 * 7 6 5 36 36 H 1.08995 * 109.47049 * 210.03076 * 9 8 7 37 37 H 1.09002 * 109.47032 * 330.03249 * 9 8 7 38 38 H 1.09001 * 109.46725 * 300.00126 * 13 11 10 39 39 H 1.08997 * 109.46783 * 59.99888 * 13 11 10 40 40 H 1.08993 * 109.47102 * 299.99751 * 14 13 11 41 41 H 1.09001 * 109.47261 * 60.00378 * 14 13 11 42 42 H 1.08997 * 109.47625 * 299.99991 * 15 14 13 43 43 H 1.09001 * 109.46834 * 60.00227 * 15 14 13 44 44 H 1.09006 * 109.47038 * 300.00228 * 16 15 14 45 45 H 1.09002 * 109.47431 * 59.99687 * 16 15 14 46 46 H 0.96997 * 120.00315 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 1.7797 -1.9402 1.5282 7 6 2.2986 -2.4066 2.6460 8 6 3.0302 -1.5210 3.3292 9 6 3.7393 -1.7757 4.6343 10 8 5.0850 -2.2522 4.3690 11 6 5.8550 -2.5272 5.4335 12 8 5.4189 -2.3754 6.5501 13 6 7.2635 -3.0255 5.2361 14 6 7.9170 -3.2607 6.5993 15 6 9.3468 -3.7672 6.3988 16 6 10.0006 -4.0018 7.7620 17 6 11.4091 -4.5000 7.5646 18 1 11.7991 -4.6354 6.5666 19 6 12.1998 -4.7831 8.6580 20 7 11.7252 -4.6178 9.8733 21 14 13.9455 -5.4014 8.4133 22 1 14.7273 -4.3903 7.6572 23 1 14.5801 -5.6290 9.7364 24 1 13.9170 -6.6759 7.6517 25 16 3.0193 -0.0033 2.4343 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7216 -1.2489 35 1 2.1493 -3.4227 2.9802 36 1 3.7880 -0.8502 5.2080 37 1 3.1933 -2.5279 5.2038 38 1 7.2429 -3.9611 4.6771 39 1 7.8370 -2.2832 4.6810 40 1 7.9376 -2.3254 7.1586 41 1 7.3434 -4.0033 7.1540 42 1 9.3260 -4.7026 5.8397 43 1 9.9207 -3.0250 5.8440 44 1 10.0216 -3.0661 8.3208 45 1 9.4268 -4.7438 8.3174 46 1 12.2816 -4.8166 10.6425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805931992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:04 Heat of formation + Delta-G solvation = -98.727066 kcal Electronic energy + Delta-G solvation = -23713.139483 eV Core-core repulsion = 20113.779404 eV Total energy + Delta-G solvation = -3599.360079 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.65837 -40.95473 -38.15087 -37.51853 -36.62965 -34.66804 -32.77109 -31.54940 -28.40999 -28.25312 -28.19192 -27.38557 -25.41594 -24.30173 -22.14270 -22.05442 -21.48129 -19.89008 -18.95158 -18.72437 -18.37361 -17.70729 -17.43238 -16.53670 -16.39514 -16.07433 -15.90298 -15.46384 -15.04464 -14.69823 -14.68685 -14.54160 -14.39516 -13.82104 -13.73958 -13.56637 -13.28506 -13.15227 -13.07593 -12.80953 -12.62404 -12.58924 -12.39354 -12.38026 -12.19564 -12.19071 -12.00609 -11.94928 -11.75118 -11.69916 -11.38248 -11.30651 -11.07967 -10.63211 -10.53356 -10.38187 -9.92806 -8.18018 -6.29824 -0.52873 0.21304 0.66146 1.12814 1.41192 1.44756 1.46934 1.52644 1.94493 2.42676 2.96083 3.14882 3.51340 3.72133 3.76280 3.83677 3.92993 3.97968 3.99826 4.08612 4.20944 4.32034 4.53530 4.56147 4.63324 4.69043 4.72914 4.77966 4.83683 4.85792 4.93073 4.95416 4.96756 5.06419 5.14594 5.20558 5.24364 5.32364 5.34673 5.37606 5.38713 5.56828 5.78377 5.88759 6.26137 6.62921 6.66717 6.88368 7.39679 8.93743 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.032093 B = 0.001618 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.248307 B =17304.887540 C =17651.290514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.005 3.995 3 C -0.155 4.155 4 C -0.132 4.132 5 C 0.064 3.936 6 N -0.497 5.497 7 C 0.065 3.935 8 C -0.262 4.262 9 C 0.146 3.854 10 O -0.355 6.355 11 C 0.468 3.532 12 O -0.538 6.538 13 C -0.103 4.103 14 C -0.100 4.100 15 C -0.097 4.097 16 C 0.018 3.982 17 C -0.544 4.544 18 H 0.066 0.934 19 C -0.005 4.005 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.265 1.265 23 H -0.285 1.285 24 H -0.265 1.265 25 S 0.168 5.832 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.052 0.948 35 H 0.189 0.811 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.063 0.937 44 H -0.013 1.013 45 H -0.013 1.013 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.501 12.544 -24.775 37.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.001 3.999 3 C -0.213 4.213 4 C -0.191 4.191 5 C -0.213 4.213 6 N -0.210 5.210 7 C -0.088 4.088 8 C -0.383 4.383 9 C 0.070 3.930 10 O -0.272 6.272 11 C 0.313 3.687 12 O -0.428 6.428 13 C -0.140 4.140 14 C -0.138 4.138 15 C -0.134 4.134 16 C -0.019 4.019 17 C -0.582 4.582 18 H 0.084 0.916 19 C -0.202 4.202 20 N -0.576 5.576 21 Si 0.792 3.208 22 H -0.190 1.190 23 H -0.211 1.211 24 H -0.190 1.190 25 S 0.426 5.574 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.206 0.794 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.006 0.994 45 H 0.006 0.994 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.508 13.287 -24.475 37.097 hybrid contribution 0.592 -1.416 1.230 1.967 sum -23.916 11.871 -23.245 35.401 Atomic orbital electron populations 1.21830 0.91470 1.02519 1.03162 1.19487 0.97191 0.94784 0.88465 1.22072 1.01779 0.93056 1.04406 1.21834 1.00973 1.00478 0.95796 1.27794 0.98970 0.93328 1.01211 1.66287 1.24579 1.12711 1.17459 1.22052 0.95435 1.01640 0.89638 1.25580 1.09593 0.98814 1.04346 1.21060 0.79284 1.01170 0.91481 1.86592 1.26158 1.76726 1.37750 1.24316 0.89086 0.73225 0.82073 1.90681 1.74910 1.50315 1.26873 1.21516 0.86856 1.05371 1.00243 1.21357 0.95884 1.01149 0.95391 1.21444 0.93619 1.00616 0.97745 1.19056 0.94634 0.94578 0.93625 1.21737 0.99373 1.44000 0.93093 0.91626 1.26055 1.03407 0.95874 0.94888 1.70112 1.38694 1.50126 0.98698 0.85463 0.78798 0.79216 0.77329 1.19004 1.21085 1.19022 1.83926 1.46151 1.12664 1.14667 0.92654 0.89368 0.92811 0.91847 0.88517 0.91635 0.92827 0.89322 0.92868 0.79434 0.89742 0.88326 0.85313 0.85322 0.92981 0.92981 0.91888 0.91874 0.99433 0.99444 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 8.45 71.98 0.61 -0.62 16 2 C 0.00 0.05 0.99 -52.93 -0.05 0.00 16 3 C -0.16 -1.09 7.54 71.98 0.54 -0.55 16 4 C -0.13 -1.34 8.45 71.98 0.61 -0.73 16 5 C 0.06 1.04 5.78 88.52 0.51 1.55 16 6 N -0.50 -9.82 10.53 -191.44 -2.02 -11.83 16 7 C 0.07 1.23 11.25 83.66 0.94 2.17 16 8 C -0.26 -4.95 6.24 24.64 0.15 -4.79 16 9 C 0.15 2.95 5.99 71.24 0.43 3.37 16 10 O -0.35 -8.37 10.20 -51.40 -0.52 -8.90 16 11 C 0.47 12.64 7.96 71.24 0.57 13.21 16 12 O -0.54 -18.15 15.73 21.95 0.35 -17.81 16 13 C -0.10 -2.50 5.81 29.85 0.17 -2.33 16 14 C -0.10 -3.40 4.50 30.59 0.14 -3.26 16 15 C -0.10 -3.82 5.15 30.59 0.16 -3.66 16 16 C 0.02 0.98 4.97 29.85 0.15 1.12 16 17 C -0.54 -31.23 9.11 25.60 0.23 -30.99 16 18 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 19 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 20 N -0.94 -58.30 13.29 21.45 0.28 -58.01 16 21 Si 0.97 44.53 29.54 68.60 2.03 46.55 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 25 S 0.17 2.66 21.57 -56.49 -1.22 1.44 16 26 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.48 7.92 -2.39 -0.02 0.46 16 30 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.06 0.45 7.92 -2.39 -0.02 0.44 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.19 2.88 8.06 -2.91 -0.02 2.85 16 36 H 0.08 1.67 8.13 -2.39 -0.02 1.65 16 37 H 0.10 1.86 8.13 -2.39 -0.02 1.84 16 38 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.05 1.90 8.10 -2.39 -0.02 1.88 16 41 H 0.05 1.90 8.10 -2.39 -0.02 1.88 16 42 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 44 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 45 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 46 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -72.49 398.09 5.45 -67.03 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 0.94 Total: 6.86 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: 5.62 Total: -25.34 kcal Atomic # 7 Polarization: -68.11 SS G_CDS: -1.73 Total: -69.84 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.18 Total: -26.70 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -1.22 Total: 1.44 kcal Total: -72.49 5.45 -67.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805931992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.694 kcal (2) G-P(sol) polarization free energy of solvation -72.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds