Wall clock time and date at job start Tue Mar 31 2020 14:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46660 * 2 1 4 4 C 1.52995 * 109.47442 * 240.00102 * 2 1 3 5 5 C 1.50700 * 109.47192 * 119.99697 * 2 1 3 6 6 C 1.33635 * 126.03862 * 59.98731 * 5 2 1 7 7 N 1.31776 * 114.50289 * 180.02562 * 6 5 2 8 8 C 1.29027 * 117.12568 * 0.02562 * 7 6 5 9 9 C 1.50699 * 124.91918 * 180.02562 * 8 7 6 10 10 O 1.45207 * 109.47426 * 89.95399 * 9 8 7 11 11 C 1.34222 * 116.99838 * 180.02562 * 10 9 8 12 12 O 1.20824 * 120.00579 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99769 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.47497 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47594 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47231 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46843 * 179.97438 * 16 15 14 18 18 H 1.08007 * 120.00255 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99726 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99778 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00260 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47088 * 89.99946 * 21 19 17 23 23 H 1.48493 * 109.47488 * 210.00485 * 21 19 17 24 24 H 1.48500 * 109.46954 * 330.00648 * 21 19 17 25 25 S 1.70977 * 110.16578 * 359.97438 * 8 7 6 26 26 H 1.09004 * 109.47553 * 299.99939 * 1 2 3 27 27 H 1.08993 * 109.47526 * 60.00376 * 1 2 3 28 28 H 1.09008 * 109.46866 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46750 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.46844 * 300.00041 * 3 2 1 31 31 H 1.09004 * 109.47088 * 59.99776 * 3 2 1 32 32 H 1.08994 * 109.46886 * 299.99640 * 4 2 1 33 33 H 1.09001 * 109.46997 * 59.99584 * 4 2 1 34 34 H 1.08998 * 109.47343 * 179.97438 * 4 2 1 35 35 H 1.08004 * 122.75010 * 0.03733 * 6 5 2 36 36 H 1.09000 * 109.47371 * 209.95446 * 9 8 7 37 37 H 1.09005 * 109.46982 * 329.95505 * 9 8 7 38 38 H 1.09006 * 109.46984 * 300.00348 * 13 11 10 39 39 H 1.08997 * 109.47525 * 59.99805 * 13 11 10 40 40 H 1.09011 * 109.46516 * 299.99715 * 14 13 11 41 41 H 1.08997 * 109.47260 * 59.99192 * 14 13 11 42 42 H 1.09006 * 109.46952 * 299.99937 * 15 14 13 43 43 H 1.09005 * 109.47188 * 59.99315 * 15 14 13 44 44 H 1.08994 * 109.47287 * 299.99823 * 16 15 14 45 45 H 1.09002 * 109.46701 * 60.00459 * 16 15 14 46 46 H 0.97000 * 119.99838 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 1.7848 -1.9814 1.5607 7 7 2.3390 -2.3702 2.6912 8 6 3.0399 -1.4978 3.3334 9 6 3.7490 -1.7524 4.6385 10 8 5.0945 -2.2296 4.3734 11 6 5.8640 -2.5057 5.4379 12 8 5.4277 -2.3541 6.5544 13 6 7.2722 -3.0048 5.2406 14 6 7.9253 -3.2411 6.6038 15 6 9.3548 -3.7484 6.4035 16 6 10.0081 -3.9842 7.7668 17 6 11.4158 -4.4844 7.5695 18 1 11.8058 -4.6202 6.5714 19 6 12.2060 -4.7688 8.6630 20 7 13.4347 -5.2049 8.4907 21 14 11.5320 -4.5332 10.3891 22 1 10.8836 -5.7897 10.8430 23 1 12.6431 -4.1882 11.3117 24 1 10.5330 -3.4344 10.3846 25 16 3.0489 -0.0114 2.4885 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 3.1298 1.4426 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6764 1.9565 0.8900 32 1 1.6768 -1.7488 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2494 35 1 1.1802 -2.6364 0.9508 36 1 3.7983 -0.8267 5.2119 37 1 3.2026 -2.5040 5.2083 38 1 7.2512 -3.9401 4.6811 39 1 7.8464 -2.2627 4.6860 40 1 7.9464 -2.3060 7.1636 41 1 7.3510 -3.9834 7.1581 42 1 9.3334 -4.6836 5.8439 43 1 9.9294 -3.0064 5.8491 44 1 10.0295 -3.0488 8.3260 45 1 9.4336 -4.7261 8.3215 46 1 13.9908 -5.4045 9.2600 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805939564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:55 Heat of formation + Delta-G solvation = -76.695813 kcal Electronic energy + Delta-G solvation = -23764.946932 eV Core-core repulsion = 20166.542200 eV Total energy + Delta-G solvation = -3598.404732 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.70974 -40.20578 -37.61855 -36.75947 -35.12478 -32.66712 -31.49504 -30.24972 -28.19163 -27.83808 -27.82093 -26.16539 -24.34588 -22.55080 -21.45149 -20.55852 -20.09140 -19.24214 -18.38803 -17.71009 -16.71254 -16.59957 -16.54756 -15.88444 -15.19895 -15.05621 -14.54616 -14.46521 -14.31797 -14.18108 -13.92260 -13.42104 -13.00434 -12.86671 -12.79282 -12.56390 -12.46047 -12.27648 -12.21536 -12.13365 -11.88637 -11.78318 -11.62650 -11.23228 -11.17069 -10.98060 -10.80843 -10.60620 -10.59102 -9.99785 -9.88336 -9.68700 -9.67385 -9.55932 -9.25729 -9.13972 -8.50241 -6.01202 -3.98946 0.13600 0.84551 1.30391 2.16264 2.16812 2.79159 3.34582 3.41731 3.46896 3.65480 4.00065 4.21892 4.33149 4.47986 4.49132 4.68291 4.70052 4.83536 4.95814 5.02573 5.04270 5.13719 5.15887 5.17013 5.18867 5.28918 5.32466 5.33472 5.38537 5.53230 5.63010 5.68937 5.70812 5.72328 5.94068 6.03328 6.22171 6.32954 6.60678 6.74524 6.94853 7.29689 7.34993 7.47742 7.66750 7.83457 8.57198 9.03758 9.61861 11.12245 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.034020 B = 0.001678 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.838378 B =16687.094497 C =16972.966337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.008 3.992 3 C -0.152 4.152 4 C -0.138 4.138 5 C -0.202 4.202 6 C 0.034 3.966 7 N -0.448 5.448 8 C 0.024 3.976 9 C 0.145 3.855 10 O -0.354 6.354 11 C 0.464 3.536 12 O -0.504 6.504 13 C -0.110 4.110 14 C -0.111 4.111 15 C -0.103 4.103 16 C -0.015 4.015 17 C -0.521 4.521 18 H 0.071 0.929 19 C 0.065 3.935 20 N -0.905 5.905 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.265 1.265 25 S 0.161 5.839 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.175 0.825 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.016 0.984 45 H 0.012 0.988 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.170 14.028 -20.269 38.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.005 3.995 3 C -0.210 4.210 4 C -0.196 4.196 5 C -0.323 4.323 6 C -0.118 4.118 7 N -0.163 5.163 8 C -0.252 4.252 9 C 0.068 3.932 10 O -0.271 6.271 11 C 0.307 3.693 12 O -0.390 6.390 13 C -0.148 4.148 14 C -0.149 4.149 15 C -0.140 4.140 16 C -0.053 4.053 17 C -0.559 4.559 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.544 5.544 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.189 1.189 25 S 0.418 5.582 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.192 0.808 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.034 0.966 45 H 0.030 0.970 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -28.725 14.465 -19.353 37.535 hybrid contribution -0.862 -0.604 0.531 1.179 sum -29.587 13.862 -18.822 37.707 Atomic orbital electron populations 1.21912 0.92688 1.02559 1.02402 1.19078 0.95913 0.94648 0.89831 1.22032 1.01679 0.94429 1.02848 1.21914 1.01656 1.00415 0.95642 1.26210 1.05461 0.98566 1.02059 1.21615 1.02290 0.93960 0.93908 1.66228 1.08865 1.34277 1.06953 1.26367 1.02828 0.94043 1.01981 1.21127 0.80509 1.01652 0.89897 1.86580 1.24794 1.77100 1.38665 1.24257 0.88746 0.73966 0.82305 1.90681 1.74102 1.48746 1.25491 1.21612 0.87194 1.03569 1.02436 1.21620 0.97417 1.02504 0.93358 1.21479 0.92098 1.00164 1.00275 1.19576 0.96316 0.96440 0.92929 1.21176 0.96074 1.43710 0.94906 0.91043 1.25040 0.94718 0.94592 0.99225 1.69919 1.07976 1.45824 1.30694 0.86773 0.78772 0.79155 0.84582 1.20320 1.21437 1.18937 1.83994 1.45150 1.15043 1.14023 0.92275 0.91588 0.92071 0.91903 0.91187 0.92020 0.92050 0.91589 0.92122 0.80758 0.88896 0.88121 0.87546 0.87579 0.91461 0.91452 0.92548 0.92537 0.96559 0.96995 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.56 8.35 37.16 0.31 -0.25 16 2 C 0.01 0.04 0.93 -155.66 -0.14 -0.10 16 3 C -0.15 -0.68 7.59 37.16 0.28 -0.40 16 4 C -0.14 -0.62 8.35 37.16 0.31 -0.31 16 5 C -0.20 -1.48 5.15 -35.92 -0.19 -1.67 16 6 C 0.03 0.29 10.62 -19.19 -0.20 0.09 16 7 N -0.45 -5.05 10.54 -11.86 -0.13 -5.17 16 8 C 0.02 0.26 7.03 -13.46 -0.09 0.16 16 9 C 0.15 1.57 6.04 36.01 0.22 1.79 16 10 O -0.35 -4.45 10.20 -39.24 -0.40 -4.85 16 11 C 0.46 6.34 7.96 36.01 0.29 6.62 16 12 O -0.50 -8.17 15.73 -18.75 -0.29 -8.46 16 13 C -0.11 -1.40 5.81 -27.88 -0.16 -1.56 16 14 C -0.11 -1.79 4.50 -26.73 -0.12 -1.91 16 15 C -0.10 -1.97 5.15 -26.73 -0.14 -2.11 16 16 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 16 17 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 18 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.90 -28.26 13.96 55.43 0.77 -27.48 16 21 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 25 S 0.16 1.30 21.82 -107.50 -2.35 -1.05 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.24 8.00 -51.92 -0.42 -0.18 16 29 H 0.06 0.31 8.00 -51.93 -0.42 -0.11 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.28 8.00 -51.93 -0.42 -0.13 16 32 H 0.06 0.27 8.00 -51.93 -0.42 -0.15 16 33 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.18 1.14 8.06 -52.48 -0.42 0.72 16 36 H 0.09 0.86 8.13 -51.93 -0.42 0.44 16 37 H 0.10 1.10 8.13 -51.93 -0.42 0.68 16 38 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.07 1.11 8.10 -51.92 -0.42 0.69 16 41 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 45 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 46 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 LS Contribution 393.99 15.07 5.94 5.94 Total: -1.00 -33.76 393.99 -9.24 -42.99 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -7.93 Total: -5.79 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -0.18 Total: -13.66 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 0.65 Total: -32.66 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.70 Total: -13.31 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.35 Total: -1.05 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.76 -9.24 -42.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805939564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.704 kcal (2) G-P(sol) polarization free energy of solvation -33.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds