Wall clock time and date at job start Tue Mar 31 2020 14:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46660 * 2 1 4 4 C 1.52995 * 109.47442 * 240.00102 * 2 1 3 5 5 C 1.50700 * 109.47192 * 119.99697 * 2 1 3 6 6 C 1.33635 * 126.03862 * 59.98731 * 5 2 1 7 7 N 1.31776 * 114.50289 * 180.02562 * 6 5 2 8 8 C 1.29027 * 117.12568 * 0.02562 * 7 6 5 9 9 C 1.50699 * 124.91918 * 180.02562 * 8 7 6 10 10 O 1.45207 * 109.47426 * 89.95399 * 9 8 7 11 11 C 1.34222 * 116.99838 * 180.02562 * 10 9 8 12 12 O 1.20824 * 120.00579 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99769 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.47497 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47594 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47231 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46843 * 179.97438 * 16 15 14 18 18 H 1.08007 * 120.00255 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99726 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99778 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00260 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47088 * 89.99946 * 21 19 17 23 23 H 1.48493 * 109.47488 * 210.00485 * 21 19 17 24 24 H 1.48500 * 109.46954 * 330.00648 * 21 19 17 25 25 S 1.70977 * 110.16578 * 359.97438 * 8 7 6 26 26 H 1.09004 * 109.47553 * 299.99939 * 1 2 3 27 27 H 1.08993 * 109.47526 * 60.00376 * 1 2 3 28 28 H 1.09008 * 109.46866 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46750 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.46844 * 300.00041 * 3 2 1 31 31 H 1.09004 * 109.47088 * 59.99776 * 3 2 1 32 32 H 1.08994 * 109.46886 * 299.99640 * 4 2 1 33 33 H 1.09001 * 109.46997 * 59.99584 * 4 2 1 34 34 H 1.08998 * 109.47343 * 179.97438 * 4 2 1 35 35 H 1.08004 * 122.75010 * 0.03733 * 6 5 2 36 36 H 1.09000 * 109.47371 * 209.95446 * 9 8 7 37 37 H 1.09005 * 109.46982 * 329.95505 * 9 8 7 38 38 H 1.09006 * 109.46984 * 300.00348 * 13 11 10 39 39 H 1.08997 * 109.47525 * 59.99805 * 13 11 10 40 40 H 1.09011 * 109.46516 * 299.99715 * 14 13 11 41 41 H 1.08997 * 109.47260 * 59.99192 * 14 13 11 42 42 H 1.09006 * 109.46952 * 299.99937 * 15 14 13 43 43 H 1.09005 * 109.47188 * 59.99315 * 15 14 13 44 44 H 1.08994 * 109.47287 * 299.99823 * 16 15 14 45 45 H 1.09002 * 109.46701 * 60.00459 * 16 15 14 46 46 H 0.97000 * 119.99838 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 1.7848 -1.9814 1.5607 7 7 2.3390 -2.3702 2.6912 8 6 3.0399 -1.4978 3.3334 9 6 3.7490 -1.7524 4.6385 10 8 5.0945 -2.2296 4.3734 11 6 5.8640 -2.5057 5.4379 12 8 5.4277 -2.3541 6.5544 13 6 7.2722 -3.0048 5.2406 14 6 7.9253 -3.2411 6.6038 15 6 9.3548 -3.7484 6.4035 16 6 10.0081 -3.9842 7.7668 17 6 11.4158 -4.4844 7.5695 18 1 11.8058 -4.6202 6.5714 19 6 12.2060 -4.7688 8.6630 20 7 13.4347 -5.2049 8.4907 21 14 11.5320 -4.5332 10.3891 22 1 10.8836 -5.7897 10.8430 23 1 12.6431 -4.1882 11.3117 24 1 10.5330 -3.4344 10.3846 25 16 3.0489 -0.0114 2.4885 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 3.1298 1.4426 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6764 1.9565 0.8900 32 1 1.6768 -1.7488 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2494 35 1 1.1802 -2.6364 0.9508 36 1 3.7983 -0.8267 5.2119 37 1 3.2026 -2.5040 5.2083 38 1 7.2512 -3.9401 4.6811 39 1 7.8464 -2.2627 4.6860 40 1 7.9464 -2.3060 7.1636 41 1 7.3510 -3.9834 7.1581 42 1 9.3334 -4.6836 5.8439 43 1 9.9294 -3.0064 5.8491 44 1 10.0295 -3.0488 8.3260 45 1 9.4336 -4.7261 8.3215 46 1 13.9908 -5.4045 9.2600 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805939564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:54 Heat of formation + Delta-G solvation = -95.025161 kcal Electronic energy + Delta-G solvation = -23765.741752 eV Core-core repulsion = 20166.542200 eV Total energy + Delta-G solvation = -3599.199552 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.69647 -40.92366 -38.24000 -37.65960 -36.66297 -34.65170 -32.47369 -31.70935 -28.91283 -28.28137 -28.15127 -27.69892 -25.18814 -24.04776 -22.03637 -21.94858 -21.52636 -19.86313 -19.03685 -18.92308 -18.64960 -17.70492 -17.42193 -16.54940 -16.30676 -16.23646 -15.76422 -15.26600 -15.08843 -14.85542 -14.75160 -14.60587 -14.50726 -13.85196 -13.80166 -13.73900 -13.40716 -13.20398 -13.14846 -12.87943 -12.66205 -12.60887 -12.38006 -12.35430 -12.13220 -11.99902 -11.90340 -11.77206 -11.74780 -11.64185 -11.40387 -11.33526 -11.24566 -10.75000 -10.69509 -10.32397 -9.90875 -8.28562 -6.31854 -0.54809 0.20112 0.64791 1.11083 1.36204 1.37042 1.37720 1.50109 1.96630 2.36924 2.93562 3.07037 3.53478 3.69351 3.72808 3.85306 3.94956 3.97687 4.07303 4.11340 4.19385 4.30298 4.48266 4.51449 4.60023 4.73595 4.74379 4.74467 4.81230 4.84628 4.98128 4.98659 4.99701 5.10184 5.10957 5.14560 5.19416 5.26261 5.31491 5.36084 5.38275 5.60123 5.65642 5.69310 6.30492 6.61097 6.63974 6.76549 7.32965 8.88048 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.034020 B = 0.001678 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.838378 B =16687.094497 C =16972.966337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.007 3.993 3 C -0.154 4.154 4 C -0.137 4.137 5 C -0.189 4.189 6 C 0.016 3.984 7 N -0.475 5.475 8 C -0.004 4.004 9 C 0.143 3.857 10 O -0.355 6.355 11 C 0.471 3.529 12 O -0.534 6.534 13 C -0.105 4.105 14 C -0.101 4.101 15 C -0.095 4.095 16 C -0.017 4.017 17 C -0.532 4.532 18 H 0.036 0.964 19 C 0.003 3.997 20 N -0.951 5.951 21 Si 0.949 3.051 22 H -0.268 1.268 23 H -0.283 1.283 24 H -0.249 1.249 25 S 0.189 5.811 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.191 0.809 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.017 0.983 45 H 0.015 0.985 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.199 15.379 -21.097 40.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.004 3.996 3 C -0.211 4.211 4 C -0.195 4.195 5 C -0.311 4.311 6 C -0.135 4.135 7 N -0.191 5.191 8 C -0.280 4.280 9 C 0.067 3.933 10 O -0.272 6.272 11 C 0.315 3.685 12 O -0.423 6.423 13 C -0.142 4.142 14 C -0.139 4.139 15 C -0.133 4.133 16 C -0.054 4.054 17 C -0.570 4.570 18 H 0.054 0.946 19 C -0.194 4.194 20 N -0.592 5.592 21 Si 0.772 3.228 22 H -0.193 1.193 23 H -0.209 1.209 24 H -0.173 1.173 25 S 0.446 5.554 26 H 0.072 0.928 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.208 0.792 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.036 0.964 45 H 0.033 0.967 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -30.768 15.821 -20.201 40.063 hybrid contribution -0.240 -0.997 0.627 1.201 sum -31.008 14.825 -19.574 39.552 Atomic orbital electron populations 1.21913 0.91675 1.02870 1.02941 1.19227 0.96637 0.94805 0.88895 1.22060 1.01369 0.94080 1.03624 1.21921 1.01061 1.00684 0.95878 1.26613 1.04008 0.98211 1.02243 1.21878 1.03008 0.94886 0.93707 1.66210 1.09449 1.35479 1.07989 1.26309 1.03837 0.95367 1.02454 1.21246 0.79502 1.01994 0.90605 1.86556 1.25608 1.76870 1.38151 1.24313 0.88980 0.73225 0.81962 1.90672 1.74787 1.50220 1.26588 1.21530 0.86730 1.05247 1.00712 1.21399 0.95360 1.01826 0.95325 1.21336 0.93806 1.00667 0.97470 1.19575 0.93867 0.96089 0.95914 1.21565 0.98490 1.43466 0.93492 0.94561 1.26009 0.94933 0.94341 1.04072 1.70066 1.09585 1.47361 1.32195 0.85678 0.78484 0.79837 0.78784 1.19327 1.20861 1.17283 1.83845 1.44687 1.13381 1.13526 0.92776 0.90023 0.91929 0.92422 0.89591 0.92147 0.91941 0.89972 0.93053 0.79210 0.87592 0.88824 0.85747 0.85284 0.91899 0.92156 0.92350 0.92142 0.96427 0.96701 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 8.35 71.98 0.60 -0.21 16 2 C 0.01 0.06 0.93 -52.93 -0.05 0.01 16 3 C -0.15 -1.05 7.59 71.99 0.55 -0.50 16 4 C -0.14 -0.95 8.35 71.98 0.60 -0.35 16 5 C -0.19 -2.53 5.15 24.64 0.13 -2.40 16 6 C 0.02 0.26 10.62 83.66 0.89 1.15 16 7 N -0.47 -10.56 10.54 -191.45 -2.02 -12.57 16 8 C 0.00 -0.09 7.03 88.52 0.62 0.53 16 9 C 0.14 3.05 6.04 71.24 0.43 3.48 16 10 O -0.36 -8.56 10.20 -51.34 -0.52 -9.08 16 11 C 0.47 12.24 7.96 71.24 0.57 12.81 16 12 O -0.53 -16.89 15.73 21.97 0.35 -16.54 16 13 C -0.10 -2.44 5.81 29.85 0.17 -2.26 16 14 C -0.10 -3.09 4.50 30.59 0.14 -2.95 16 15 C -0.10 -3.54 5.15 30.59 0.16 -3.39 16 16 C -0.02 -0.81 4.04 29.85 0.12 -0.69 16 17 C -0.53 -31.14 9.66 25.60 0.25 -30.89 16 18 H 0.04 2.30 7.99 -2.91 -0.02 2.28 16 19 C 0.00 0.18 5.47 84.66 0.46 0.64 16 20 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 21 Si 0.95 45.49 27.47 68.60 1.88 47.38 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.25 -11.23 6.54 99.48 0.65 -10.58 16 25 S 0.19 2.83 21.82 -56.49 -1.23 1.60 16 26 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.06 0.37 8.00 -2.38 -0.02 0.35 16 29 H 0.06 0.46 8.00 -2.39 -0.02 0.44 16 30 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.06 0.43 8.00 -2.39 -0.02 0.41 16 32 H 0.06 0.43 8.00 -2.39 -0.02 0.41 16 33 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.19 2.30 8.06 -2.91 -0.02 2.27 16 36 H 0.11 1.91 8.13 -2.39 -0.02 1.89 16 37 H 0.09 2.08 8.13 -2.38 -0.02 2.06 16 38 H 0.12 2.49 8.14 -2.38 -0.02 2.47 16 39 H 0.13 2.44 8.14 -2.39 -0.02 2.43 16 40 H 0.06 1.97 8.10 -2.38 -0.02 1.95 16 41 H 0.06 1.92 8.10 -2.39 -0.02 1.90 16 42 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 43 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 44 H 0.02 0.82 7.20 -2.39 -0.02 0.81 16 45 H 0.01 0.69 7.57 -2.39 -0.02 0.67 16 46 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -73.26 393.99 5.27 -67.99 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 0.88 Total: 6.46 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: 5.63 Total: -25.02 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -1.72 Total: -72.78 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.18 Total: -25.63 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.38 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -1.23 Total: 1.60 kcal Total: -73.26 5.27 -67.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805939564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.034 kcal (2) G-P(sol) polarization free energy of solvation -73.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds