Wall clock time and date at job start Tue Mar 31 2020 13:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31886 * 119.61512 * 2 1 4 4 C 1.31858 * 121.72530 * 180.31148 * 3 2 1 5 5 C 1.38220 * 120.76063 * 359.70194 * 4 3 2 6 6 C 1.38627 * 119.16600 * 0.02562 * 5 4 3 7 7 C 1.38176 * 119.61908 * 179.73075 * 2 1 3 8 8 C 1.50703 * 120.41933 * 359.97300 * 7 2 1 9 9 O 1.45197 * 109.47222 * 179.72340 * 8 7 2 10 10 C 1.34227 * 117.00019 * 180.02562 * 9 8 7 11 11 O 1.20825 * 120.00213 * 0.02562 * 10 9 8 12 12 C 1.50698 * 119.99983 * 180.02562 * 10 9 8 13 13 C 1.53004 * 109.47436 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.46569 * 305.97747 * 13 12 10 15 15 C 1.50704 * 109.46872 * 65.97305 * 13 12 10 16 16 H 1.08001 * 119.99878 * 26.91968 * 15 13 12 17 17 C 1.37875 * 119.99779 * 206.91458 * 15 13 12 18 18 N 1.31517 * 120.00274 * 353.28490 * 17 15 13 19 19 Si 1.86800 * 119.99751 * 173.55288 * 17 15 13 20 20 H 1.48506 * 109.47240 * 179.72593 * 19 17 15 21 21 H 1.48498 * 109.47417 * 299.72707 * 19 17 15 22 22 H 1.48504 * 109.47172 * 59.72983 * 19 17 15 23 23 C 1.50698 * 109.47365 * 185.97649 * 13 12 10 24 24 C 1.38236 * 119.99776 * 294.45070 * 23 13 12 25 25 C 1.38237 * 119.99319 * 179.78839 * 24 23 13 26 26 C 1.38230 * 120.00504 * 0.44116 * 25 24 23 27 27 C 1.38244 * 119.99897 * 359.81315 * 26 25 24 28 28 C 1.38231 * 119.99983 * 114.72558 * 23 13 12 29 29 H 1.08998 * 109.47274 * 270.26513 * 1 2 3 30 30 H 1.08996 * 109.47385 * 30.27066 * 1 2 3 31 31 H 1.08998 * 109.46957 * 150.26993 * 1 2 3 32 32 H 1.08001 * 119.61898 * 179.73295 * 4 3 2 33 33 H 1.08010 * 120.41990 * 179.97438 * 5 4 3 34 34 H 1.08002 * 120.79346 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.46730 * 59.72978 * 8 7 2 36 36 H 1.08995 * 109.47292 * 299.73091 * 8 7 2 37 37 H 1.09004 * 109.47511 * 59.99741 * 12 10 9 38 38 H 1.09000 * 109.47245 * 300.00212 * 12 10 9 39 39 H 0.97003 * 119.99283 * 354.68475 * 18 17 15 40 40 H 1.08002 * 120.00298 * 359.97438 * 24 23 13 41 41 H 1.08004 * 119.99635 * 180.27189 * 25 24 23 42 42 H 1.07997 * 120.00489 * 179.83259 * 26 25 24 43 43 H 1.07997 * 119.99969 * 179.97438 * 27 26 25 44 44 H 1.08008 * 120.00004 * 359.97428 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4764 1.1951 -0.0061 5 6 4.2266 0.0342 -0.0066 6 6 3.5766 -1.1902 -0.0011 7 6 2.1899 -1.2012 0.0056 8 6 1.4373 -2.5068 0.0124 9 8 2.3815 -3.6098 0.0108 10 6 1.8693 -4.8505 0.0158 11 8 0.6716 -5.0096 0.0208 12 6 2.7881 -6.0450 0.0151 13 6 1.9557 -7.3288 0.0220 14 1 1.2550 -7.3029 0.8566 15 6 1.1915 -7.4389 -1.2722 16 1 1.5733 -6.9687 -2.1664 17 6 0.0052 -8.1402 -1.3148 18 7 -0.3935 -8.8225 -0.2635 19 14 -1.0322 -8.1271 -2.8682 20 1 -2.2460 -8.9569 -2.6599 21 1 -1.4340 -6.7327 -3.1835 22 1 -0.2413 -8.6815 -3.9963 23 6 2.8686 -8.5187 0.1693 24 6 3.7700 -8.8264 -0.8325 25 6 4.6104 -9.9153 -0.6953 26 6 4.5432 -10.7019 0.4394 27 6 3.6380 -10.3972 1.4389 28 6 2.8006 -9.3057 1.3037 29 1 -0.3634 0.0048 1.0276 30 1 -0.3634 0.8875 -0.5180 31 1 -0.3633 -0.8924 -0.5096 32 1 3.9753 2.1530 -0.0103 33 1 5.3057 0.0804 -0.0120 34 1 4.1368 -2.1136 -0.0017 35 1 0.8067 -2.5672 -0.8747 36 1 0.8147 -2.5627 0.9053 37 1 3.4204 -6.0176 0.9026 38 1 3.4135 -6.0219 -0.8773 39 1 0.1822 -8.8961 0.5137 40 1 3.8198 -8.2143 -1.7209 41 1 5.3178 -10.1532 -1.4761 42 1 5.1979 -11.5542 0.5453 43 1 3.5852 -11.0119 2.3252 44 1 2.0935 -9.0677 2.0846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810882289.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:31 Heat of formation + Delta-G solvation = -39.358215 kcal Electronic energy + Delta-G solvation = -26456.202461 eV Core-core repulsion = 22723.972858 eV Total energy + Delta-G solvation = -3732.229604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.62389 -39.76699 -38.54635 -36.26005 -34.37244 -33.48100 -32.94104 -31.46872 -30.17904 -29.32206 -28.18166 -26.80528 -25.22453 -23.27151 -22.60242 -21.85171 -21.72214 -20.66620 -19.62696 -17.37695 -16.99533 -16.78896 -16.37400 -16.15683 -15.85065 -15.73187 -14.86493 -14.64369 -14.31877 -14.20830 -13.72890 -13.48777 -13.39707 -13.22908 -12.79476 -12.65074 -12.56250 -12.46833 -12.38697 -12.34937 -11.91788 -11.62621 -11.37534 -11.12381 -10.79305 -10.55002 -10.51355 -10.24150 -10.10914 -9.82387 -9.80847 -9.78115 -9.59305 -8.93594 -8.75896 -8.40417 -8.20212 -7.73381 -6.33174 -4.04376 0.89000 1.14046 2.12541 2.16248 2.94920 3.02178 3.44641 3.48653 3.58305 3.65099 4.12391 4.49967 4.52939 4.59798 4.69055 4.76504 4.95774 5.25205 5.27309 5.29493 5.36873 5.42867 5.46525 5.49579 5.54525 5.56657 5.66129 5.69265 5.86964 5.90009 5.92312 6.01793 6.06795 6.13534 6.24310 6.31965 6.50705 6.52819 6.70429 6.81786 6.95473 7.07792 7.16264 7.29520 7.61234 7.77800 7.79678 8.08191 8.39563 8.47863 8.85535 9.65446 11.06041 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012890 B = 0.003231 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.784327 B = 8663.503499 C =10163.311946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.134 3.866 3 N -0.484 5.484 4 C 0.097 3.903 5 C -0.180 4.180 6 C -0.051 4.051 7 C -0.137 4.137 8 C 0.113 3.887 9 O -0.372 6.372 10 C 0.459 3.541 11 O -0.467 6.467 12 C -0.088 4.088 13 C 0.069 3.931 14 H 0.052 0.948 15 C -0.577 4.577 16 H 0.048 0.952 17 C 0.034 3.966 18 N -0.902 5.902 19 Si 1.060 2.940 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.289 1.289 23 C -0.035 4.035 24 C -0.105 4.105 25 C -0.129 4.129 26 C -0.150 4.150 27 C -0.124 4.124 28 C -0.129 4.129 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.155 0.845 33 H 0.136 0.864 34 H 0.146 0.854 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.272 0.728 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.593 12.290 1.961 15.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.004 4.004 3 N -0.194 5.194 4 C -0.061 4.061 5 C -0.200 4.200 6 C -0.077 4.077 7 C -0.139 4.139 8 C 0.038 3.962 9 O -0.291 6.291 10 C 0.300 3.700 11 O -0.349 6.349 12 C -0.126 4.126 13 C 0.050 3.950 14 H 0.070 0.930 15 C -0.615 4.615 16 H 0.066 0.934 17 C -0.172 4.172 18 N -0.537 5.537 19 Si 0.889 3.111 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.216 1.216 23 C -0.036 4.036 24 C -0.123 4.123 25 C -0.148 4.148 26 C -0.168 4.168 27 C -0.143 4.143 28 C -0.147 4.147 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.172 0.828 33 H 0.153 0.847 34 H 0.164 0.836 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.134 0.866 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.251 12.516 1.330 14.526 hybrid contribution 1.921 -0.332 0.523 2.019 sum 9.172 12.184 1.853 15.362 Atomic orbital electron populations 1.20821 0.88657 1.03934 1.03482 1.21003 0.97040 0.87325 0.95010 1.67561 1.10156 1.28593 1.13060 1.22733 0.89464 0.98515 0.95341 1.22158 1.01568 0.93328 1.02954 1.21541 0.93718 0.98978 0.93435 1.20545 0.95163 0.94764 1.03470 1.21492 0.90115 0.81380 1.03201 1.86450 1.41158 1.15802 1.85692 1.23957 0.89898 0.82955 0.73210 1.90723 1.16529 1.85435 1.42204 1.21480 0.97235 0.90796 1.03050 1.17946 0.91395 0.85228 1.00420 0.93023 1.21571 1.08670 1.37248 0.93964 0.93414 1.25605 0.96180 0.92791 1.02606 1.70749 1.39707 1.37789 1.05438 0.83684 0.76438 0.76332 0.74695 1.20810 1.21463 1.21573 1.20720 0.93021 0.98188 0.91625 1.20938 0.95561 0.97232 0.98607 1.21025 0.99915 0.96288 0.97529 1.20851 1.00452 1.00242 0.95257 1.20972 0.96906 0.97670 0.98712 1.21068 0.99282 0.96232 0.98100 0.90013 0.90164 0.90279 0.82764 0.84655 0.83624 0.89629 0.89852 0.90302 0.88986 0.91706 0.86564 0.87336 0.87487 0.87351 0.87080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.77 36.01 0.35 -0.77 16 2 C 0.13 1.65 6.78 -82.59 -0.56 1.09 16 3 N -0.48 -6.03 10.27 -9.47 -0.10 -6.12 16 4 C 0.10 0.99 11.18 -17.55 -0.20 0.79 16 5 C -0.18 -1.76 10.11 -39.44 -0.40 -2.16 16 6 C -0.05 -0.60 9.49 -39.28 -0.37 -0.97 16 7 C -0.14 -1.76 5.90 -104.48 -0.62 -2.37 16 8 C 0.11 1.60 4.59 36.01 0.17 1.76 16 9 O -0.37 -6.04 8.77 -39.25 -0.34 -6.38 16 10 C 0.46 8.97 7.71 36.00 0.28 9.25 16 11 O -0.47 -10.91 14.77 -18.75 -0.28 -11.19 16 12 C -0.09 -1.65 5.07 -27.88 -0.14 -1.80 16 13 C 0.07 1.58 1.23 -92.92 -0.11 1.47 16 14 H 0.05 1.33 6.59 -51.93 -0.34 0.99 16 15 C -0.58 -15.11 6.35 -34.44 -0.22 -15.33 16 16 H 0.05 1.25 7.82 -52.49 -0.41 0.84 16 17 C 0.03 0.96 5.45 -17.82 -0.10 0.86 16 18 N -0.90 -26.70 13.56 55.43 0.75 -25.95 16 19 Si 1.06 25.39 29.91 -169.99 -5.08 20.31 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.03 -0.74 4.54 -104.63 -0.47 -1.22 16 24 C -0.11 -2.08 8.90 -39.58 -0.35 -2.43 16 25 C -0.13 -2.25 10.05 -39.58 -0.40 -2.65 16 26 C -0.15 -2.51 10.05 -39.58 -0.40 -2.91 16 27 C -0.12 -2.20 10.05 -39.58 -0.40 -2.60 16 28 C -0.13 -2.58 9.18 -39.59 -0.36 -2.95 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.77 6.62 -51.93 -0.34 0.42 16 32 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.15 1.64 7.10 -52.49 -0.37 1.26 16 35 H 0.09 1.23 7.47 -51.93 -0.39 0.84 16 36 H 0.08 1.15 8.13 -51.93 -0.42 0.73 16 37 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.09 1.62 7.97 -51.93 -0.41 1.21 16 39 H 0.27 7.89 6.24 -40.82 -0.25 7.63 16 40 H 0.12 2.23 7.85 -52.49 -0.41 1.82 16 41 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 42 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 43 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 44 H 0.11 2.19 7.95 -52.48 -0.42 1.77 16 LS Contribution 373.43 15.07 5.63 5.63 Total: -1.00 -32.29 373.43 -9.68 -41.98 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -5.96 Total: 4.65 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -4.30 Total: -22.92 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.65 Total: -32.07 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.62 Total: -17.57 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.08 Total: 20.31 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.29 -9.68 -41.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810882289.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.618 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds