Wall clock time and date at job start Tue Mar 31 2020 13:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31886 * 119.61512 * 2 1 4 4 C 1.31858 * 121.72530 * 180.31148 * 3 2 1 5 5 C 1.38220 * 120.76063 * 359.70194 * 4 3 2 6 6 C 1.38627 * 119.16600 * 0.02562 * 5 4 3 7 7 C 1.38176 * 119.61908 * 179.73075 * 2 1 3 8 8 C 1.50703 * 120.41933 * 359.97300 * 7 2 1 9 9 O 1.45197 * 109.47222 * 179.72340 * 8 7 2 10 10 C 1.34227 * 117.00019 * 180.02562 * 9 8 7 11 11 O 1.20825 * 120.00213 * 0.02562 * 10 9 8 12 12 C 1.50698 * 119.99983 * 180.02562 * 10 9 8 13 13 C 1.53004 * 109.47436 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.46569 * 305.97747 * 13 12 10 15 15 C 1.50704 * 109.46872 * 65.97305 * 13 12 10 16 16 H 1.08001 * 119.99878 * 26.91968 * 15 13 12 17 17 C 1.37875 * 119.99779 * 206.91458 * 15 13 12 18 18 N 1.31517 * 120.00274 * 353.28490 * 17 15 13 19 19 Si 1.86800 * 119.99751 * 173.55288 * 17 15 13 20 20 H 1.48506 * 109.47240 * 179.72593 * 19 17 15 21 21 H 1.48498 * 109.47417 * 299.72707 * 19 17 15 22 22 H 1.48504 * 109.47172 * 59.72983 * 19 17 15 23 23 C 1.50698 * 109.47365 * 185.97649 * 13 12 10 24 24 C 1.38236 * 119.99776 * 294.45070 * 23 13 12 25 25 C 1.38237 * 119.99319 * 179.78839 * 24 23 13 26 26 C 1.38230 * 120.00504 * 0.44116 * 25 24 23 27 27 C 1.38244 * 119.99897 * 359.81315 * 26 25 24 28 28 C 1.38231 * 119.99983 * 114.72558 * 23 13 12 29 29 H 1.08998 * 109.47274 * 270.26513 * 1 2 3 30 30 H 1.08996 * 109.47385 * 30.27066 * 1 2 3 31 31 H 1.08998 * 109.46957 * 150.26993 * 1 2 3 32 32 H 1.08001 * 119.61898 * 179.73295 * 4 3 2 33 33 H 1.08010 * 120.41990 * 179.97438 * 5 4 3 34 34 H 1.08002 * 120.79346 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.46730 * 59.72978 * 8 7 2 36 36 H 1.08995 * 109.47292 * 299.73091 * 8 7 2 37 37 H 1.09004 * 109.47511 * 59.99741 * 12 10 9 38 38 H 1.09000 * 109.47245 * 300.00212 * 12 10 9 39 39 H 0.97003 * 119.99283 * 354.68475 * 18 17 15 40 40 H 1.08002 * 120.00298 * 359.97438 * 24 23 13 41 41 H 1.08004 * 119.99635 * 180.27189 * 25 24 23 42 42 H 1.07997 * 120.00489 * 179.83259 * 26 25 24 43 43 H 1.07997 * 119.99969 * 179.97438 * 27 26 25 44 44 H 1.08008 * 120.00004 * 359.97428 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4764 1.1951 -0.0061 5 6 4.2266 0.0342 -0.0066 6 6 3.5766 -1.1902 -0.0011 7 6 2.1899 -1.2012 0.0056 8 6 1.4373 -2.5068 0.0124 9 8 2.3815 -3.6098 0.0108 10 6 1.8693 -4.8505 0.0158 11 8 0.6716 -5.0096 0.0208 12 6 2.7881 -6.0450 0.0151 13 6 1.9557 -7.3288 0.0220 14 1 1.2550 -7.3029 0.8566 15 6 1.1915 -7.4389 -1.2722 16 1 1.5733 -6.9687 -2.1664 17 6 0.0052 -8.1402 -1.3148 18 7 -0.3935 -8.8225 -0.2635 19 14 -1.0322 -8.1271 -2.8682 20 1 -2.2460 -8.9569 -2.6599 21 1 -1.4340 -6.7327 -3.1835 22 1 -0.2413 -8.6815 -3.9963 23 6 2.8686 -8.5187 0.1693 24 6 3.7700 -8.8264 -0.8325 25 6 4.6104 -9.9153 -0.6953 26 6 4.5432 -10.7019 0.4394 27 6 3.6380 -10.3972 1.4389 28 6 2.8006 -9.3057 1.3037 29 1 -0.3634 0.0048 1.0276 30 1 -0.3634 0.8875 -0.5180 31 1 -0.3633 -0.8924 -0.5096 32 1 3.9753 2.1530 -0.0103 33 1 5.3057 0.0804 -0.0120 34 1 4.1368 -2.1136 -0.0017 35 1 0.8067 -2.5672 -0.8747 36 1 0.8147 -2.5627 0.9053 37 1 3.4204 -6.0176 0.9026 38 1 3.4135 -6.0219 -0.8773 39 1 0.1822 -8.8961 0.5137 40 1 3.8198 -8.2143 -1.7209 41 1 5.3178 -10.1532 -1.4761 42 1 5.1979 -11.5542 0.5453 43 1 3.5852 -11.0119 2.3252 44 1 2.0935 -9.0677 2.0846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810882289.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:31 Heat of formation + Delta-G solvation = -55.197520 kcal Electronic energy + Delta-G solvation = -26456.889305 eV Core-core repulsion = 22723.972858 eV Total energy + Delta-G solvation = -3732.916448 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74036 -41.07902 -40.02226 -37.74010 -36.13302 -34.41268 -33.87049 -33.34722 -31.61677 -30.76979 -29.15939 -27.89782 -26.95607 -24.93669 -23.68159 -23.20456 -22.71535 -22.10284 -21.26518 -18.94616 -18.67861 -17.88064 -17.62721 -17.47546 -17.14890 -16.85129 -16.18759 -15.79575 -15.66909 -15.63990 -15.51092 -14.91258 -14.48353 -14.33365 -14.14809 -14.08412 -13.98110 -13.71890 -13.44334 -13.36235 -13.21765 -13.18335 -12.80811 -12.64039 -12.36960 -12.10877 -11.97349 -11.96751 -11.76475 -11.55470 -11.38717 -10.72150 -10.66315 -10.53125 -10.44524 -9.81990 -9.64538 -9.30250 -8.47566 -6.16812 0.02798 0.25966 0.67306 0.71179 1.36922 1.49613 1.57840 1.63913 1.74369 2.60243 2.72313 3.09186 3.30037 3.33480 3.51577 3.77329 3.89537 3.99699 4.09488 4.12902 4.13980 4.23989 4.27317 4.33447 4.37451 4.44934 4.56526 4.58461 4.62248 4.66336 4.67919 4.76513 4.83807 4.96057 5.10637 5.16003 5.18943 5.24077 5.36604 5.39413 5.49583 5.70724 5.74570 5.80383 5.90496 6.19134 6.28251 6.37717 6.73376 6.93522 6.94540 7.59052 8.92601 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012890 B = 0.003231 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.784327 B = 8663.503499 C =10163.311946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.123 3.877 3 N -0.505 5.505 4 C 0.095 3.905 5 C -0.172 4.172 6 C -0.063 4.063 7 C -0.155 4.155 8 C 0.114 3.886 9 O -0.359 6.359 10 C 0.465 3.535 11 O -0.514 6.514 12 C -0.084 4.084 13 C 0.071 3.929 14 H 0.012 0.988 15 C -0.568 4.568 16 H 0.043 0.957 17 C -0.019 4.019 18 N -0.940 5.940 19 Si 1.095 2.905 20 H -0.289 1.289 21 H -0.283 1.283 22 H -0.268 1.268 23 C -0.057 4.057 24 C -0.121 4.121 25 C -0.125 4.125 26 C -0.143 4.143 27 C -0.126 4.126 28 C -0.150 4.150 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.188 0.812 33 H 0.169 0.831 34 H 0.148 0.852 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.263 0.737 40 H 0.115 0.885 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.136 0.864 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.572 12.610 1.310 17.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.014 4.014 3 N -0.214 5.214 4 C -0.062 4.062 5 C -0.191 4.191 6 C -0.089 4.089 7 C -0.157 4.157 8 C 0.040 3.960 9 O -0.277 6.277 10 C 0.308 3.692 11 O -0.400 6.400 12 C -0.121 4.121 13 C 0.052 3.948 14 H 0.030 0.970 15 C -0.606 4.606 16 H 0.061 0.939 17 C -0.218 4.218 18 N -0.577 5.577 19 Si 0.919 3.081 20 H -0.215 1.215 21 H -0.209 1.209 22 H -0.193 1.193 23 C -0.058 4.058 24 C -0.139 4.139 25 C -0.143 4.143 26 C -0.160 4.160 27 C -0.143 4.143 28 C -0.169 4.169 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.205 0.795 33 H 0.187 0.813 34 H 0.165 0.835 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.073 0.927 40 H 0.133 0.867 41 H 0.160 0.840 42 H 0.164 0.836 43 H 0.153 0.847 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.271 12.860 0.672 16.472 hybrid contribution 1.158 -0.336 0.779 1.435 sum 11.429 12.523 1.451 17.017 Atomic orbital electron populations 1.20855 0.87798 1.04138 1.04074 1.21220 0.97892 0.87226 0.95067 1.67627 1.11471 1.28449 1.13891 1.23366 0.88907 1.00215 0.93707 1.22491 1.03220 0.92155 1.01217 1.21726 0.93323 1.00150 0.93712 1.20455 0.95823 0.93869 1.05531 1.21587 0.90062 0.81408 1.02989 1.86417 1.41190 1.15184 1.84870 1.24084 0.89215 0.84029 0.71905 1.90711 1.18410 1.86244 1.44612 1.21409 0.96831 0.88776 1.05134 1.17771 0.91568 0.88158 0.97282 0.96987 1.21834 1.08576 1.35229 0.94960 0.93884 1.26697 0.98005 0.92954 1.04191 1.70827 1.40267 1.40437 1.06186 0.83229 0.75431 0.76478 0.72947 1.21455 1.20946 1.19295 1.20510 0.94213 0.97888 0.93180 1.21035 0.96176 0.98586 0.98142 1.21410 0.99385 0.94965 0.98565 1.21325 0.99878 1.00699 0.94135 1.21308 0.96121 0.96777 1.00132 1.21141 1.00204 0.97550 0.97960 0.89214 0.89476 0.90505 0.79513 0.81326 0.83457 0.90240 0.89982 0.87543 0.87282 0.92703 0.86657 0.83992 0.83602 0.84655 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.26 9.77 71.24 0.70 -1.56 16 2 C 0.12 2.98 6.78 42.54 0.29 3.27 16 3 N -0.50 -11.88 10.27 -183.89 -1.89 -13.77 16 4 C 0.09 1.70 11.18 84.68 0.95 2.65 16 5 C -0.17 -2.89 10.11 22.36 0.23 -2.66 16 6 C -0.06 -1.40 9.49 22.47 0.21 -1.19 16 7 C -0.15 -3.92 5.90 -19.77 -0.12 -4.04 16 8 C 0.11 3.32 4.59 71.24 0.33 3.64 16 9 O -0.36 -11.72 8.77 -51.39 -0.45 -12.17 16 10 C 0.46 18.61 7.71 71.24 0.55 19.16 16 11 O -0.51 -25.16 14.77 21.97 0.32 -24.83 16 12 C -0.08 -3.19 5.07 29.85 0.15 -3.04 16 13 C 0.07 3.37 1.23 -12.28 -0.02 3.36 16 14 H 0.01 0.66 6.59 -2.39 -0.02 0.64 16 15 C -0.57 -30.53 6.35 25.60 0.16 -30.37 16 16 H 0.04 2.29 7.82 -2.91 -0.02 2.27 16 17 C -0.02 -1.10 5.45 84.65 0.46 -0.64 16 18 N -0.94 -57.99 13.56 21.45 0.29 -57.70 16 19 Si 1.09 52.19 29.91 68.60 2.05 54.24 16 20 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 C -0.06 -2.47 4.54 -19.87 -0.09 -2.56 16 24 C -0.12 -4.64 8.90 22.27 0.20 -4.44 16 25 C -0.13 -3.97 10.05 22.27 0.22 -3.74 16 26 C -0.14 -4.25 10.05 22.27 0.22 -4.03 16 27 C -0.13 -4.19 10.05 22.27 0.22 -3.96 16 28 C -0.15 -6.10 9.18 22.27 0.20 -5.90 16 29 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.55 6.62 -2.39 -0.02 1.53 16 32 H 0.19 1.99 8.06 -2.91 -0.02 1.96 16 33 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 34 H 0.15 3.12 7.10 -2.91 -0.02 3.10 16 35 H 0.08 2.39 7.47 -2.39 -0.02 2.38 16 36 H 0.08 2.38 8.13 -2.39 -0.02 2.36 16 37 H 0.11 3.43 8.14 -2.38 -0.02 3.41 16 38 H 0.11 3.76 7.97 -2.39 -0.02 3.75 16 39 H 0.26 16.12 6.24 -92.71 -0.58 15.54 16 40 H 0.12 4.32 7.85 -2.91 -0.02 4.30 16 41 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 42 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 43 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 44 H 0.10 4.11 7.95 -2.91 -0.02 4.09 16 Total: -1.00 -72.77 373.43 6.39 -66.38 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 1.19 Total: 23.91 kcal Atomic # 6 Polarization: -40.92 SS G_CDS: 4.87 Total: -36.05 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: -1.60 Total: -71.48 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -0.13 Total: -37.01 kcal Atomic # 14 Polarization: 52.19 SS G_CDS: 2.05 Total: 54.24 kcal Total: -72.77 6.39 -66.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810882289.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.183 kcal (2) G-P(sol) polarization free energy of solvation -72.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds