Wall clock time and date at job start Tue Mar 31 2020 15:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47151 * 2 1 4 4 C 1.53006 * 109.46890 * 119.99741 * 2 1 3 5 5 N 1.46894 * 109.47222 * 178.41694 * 4 2 1 6 6 C 1.46900 * 111.00092 * 286.37924 * 5 4 2 7 7 C 1.50699 * 109.47189 * 76.05845 * 6 5 4 8 8 H 1.08004 * 120.00186 * 5.03213 * 7 6 5 9 9 C 1.37879 * 120.00200 * 185.03041 * 7 6 5 10 10 N 1.31520 * 119.99753 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00249 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47308 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47263 * 120.00061 * 11 9 7 14 14 H 1.48502 * 109.47345 * 240.00247 * 11 9 7 15 15 C 1.46898 * 111.00039 * 162.42016 * 5 4 2 16 16 C 1.50699 * 109.47395 * 288.16964 * 15 5 4 17 17 C 1.38260 * 119.99720 * 276.65030 * 16 15 5 18 18 C 1.38222 * 119.99526 * 179.97438 * 17 16 15 19 19 C 1.38249 * 119.99947 * 359.95844 * 18 17 16 20 20 C 1.38205 * 120.00319 * 0.07026 * 19 18 17 21 21 S 1.76200 * 120.00082 * 179.97438 * 20 19 18 22 22 C 1.81405 * 104.44858 * 269.94813 * 21 20 19 23 23 O 1.42097 * 104.28015 * 26.02019 * 21 20 19 24 24 O 1.42102 * 104.28184 * 153.88030 * 21 20 19 25 25 C 1.38212 * 120.00063 * 96.62849 * 16 15 5 26 26 H 1.08996 * 109.47426 * 300.00085 * 1 2 3 27 27 H 1.09004 * 109.46908 * 60.00534 * 1 2 3 28 28 H 1.09004 * 109.47215 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46789 * 239.99508 * 2 1 3 30 30 H 1.09003 * 109.46858 * 304.16374 * 3 2 1 31 31 H 1.09002 * 109.47332 * 64.16160 * 3 2 1 32 32 H 1.09001 * 109.47029 * 184.16678 * 3 2 1 33 33 H 1.09000 * 109.47243 * 58.41986 * 4 2 1 34 34 H 1.09002 * 109.47251 * 298.42123 * 4 2 1 35 35 H 1.09004 * 109.46832 * 196.05376 * 6 5 4 36 36 H 1.08994 * 109.47146 * 316.05559 * 6 5 4 37 37 H 0.96993 * 119.99599 * 179.97438 * 10 9 7 38 38 H 1.09006 * 109.46741 * 168.17006 * 15 5 4 39 39 H 1.09001 * 109.46907 * 48.17106 * 15 5 4 40 40 H 1.07992 * 120.00291 * 359.97438 * 17 16 15 41 41 H 1.08002 * 119.99439 * 179.97438 * 18 17 16 42 42 H 1.08009 * 119.99821 * 180.02562 * 19 18 17 43 43 H 1.09006 * 109.46992 * 59.99981 * 22 21 20 44 44 H 1.09002 * 109.47463 * 179.97438 * 22 21 20 45 45 H 1.09003 * 109.47189 * 300.00504 * 22 21 20 46 46 H 1.07997 * 119.99510 * 359.72709 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5084 -0.7545 1.2304 6 6 4.0004 -1.7213 0.2399 7 6 3.8562 -1.1408 -1.1433 8 1 3.5171 -0.1231 -1.2692 9 6 4.1570 -1.9088 -2.2481 10 7 4.5694 -3.1483 -2.0948 11 14 3.9776 -1.1895 -3.9627 12 1 3.5001 0.2132 -3.8636 13 1 5.2931 -1.2166 -4.6511 14 1 2.9973 -1.9930 -4.7365 15 6 4.0456 -1.0491 2.5656 16 6 3.8505 0.1474 3.4608 17 6 4.7616 1.1870 3.4334 18 6 4.5824 2.2847 4.2541 19 6 3.4918 2.3433 5.1017 20 6 2.5814 1.3038 5.1295 21 16 1.1918 1.3782 6.2103 22 6 1.7720 0.6086 7.7471 23 8 0.9707 2.7688 6.4016 24 8 0.2144 0.5607 5.5814 25 6 2.7608 0.2056 4.3089 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.6170 1.9774 -0.8504 31 1 1.7389 1.9344 0.9249 32 1 3.1275 1.4433 -0.0747 33 1 1.6537 -1.7404 1.2637 34 1 1.6999 -0.1913 2.1391 35 1 5.0506 -1.9387 0.4349 36 1 3.4198 -2.6410 0.3103 37 1 4.7807 -3.6886 -2.8721 38 1 5.1091 -1.2750 2.4876 39 1 3.5217 -1.9072 2.9867 40 1 5.6131 1.1415 2.7708 41 1 5.2943 3.0966 4.2330 42 1 3.3515 3.2012 5.7427 43 1 2.6211 1.1702 8.1367 44 1 0.9667 0.6120 8.4818 45 1 2.0770 -0.4185 7.5465 46 1 2.0466 -0.6043 4.3268 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823382697.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:39 Heat of formation + Delta-G solvation = -43.149494 kcal Electronic energy + Delta-G solvation = -26426.213650 eV Core-core repulsion = 22829.263596 eV Total energy + Delta-G solvation = -3596.950055 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.48718 -37.32193 -37.19066 -36.05622 -33.91400 -32.78411 -31.33960 -31.09564 -29.75528 -27.35085 -26.36897 -26.15870 -23.92463 -23.14212 -21.74988 -20.67667 -19.08979 -18.83939 -17.57974 -16.39008 -16.35857 -16.14234 -15.99303 -15.25079 -14.98901 -14.52489 -14.38313 -14.02164 -13.71553 -13.60584 -13.47964 -13.28010 -12.82897 -12.59913 -12.42405 -12.20950 -12.19619 -12.18418 -12.06886 -11.67493 -11.54652 -11.33222 -11.24829 -11.14698 -11.03994 -10.73265 -10.50936 -10.48255 -10.13952 -10.08494 -9.92517 -9.42827 -9.22310 -9.02763 -8.78271 -8.38570 -7.28500 -6.03852 -4.01756 -0.10005 0.88884 1.32990 2.73177 3.29743 3.38167 3.41729 3.44410 3.83857 3.94360 4.41788 4.47925 4.59049 4.84781 4.86708 5.01140 5.08923 5.29936 5.31740 5.33018 5.43707 5.55039 5.71203 5.79534 5.85490 5.95126 6.03475 6.05602 6.12634 6.20237 6.32493 6.34337 6.37754 6.53601 6.61798 6.64605 6.76778 6.86740 6.89191 7.17833 7.23252 7.32155 7.50430 7.85381 8.08823 8.17263 8.52330 9.05212 9.59613 11.06602 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019550 B = 0.003437 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.895729 B = 8144.656505 C = 8552.075825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.127 4.127 4 C 0.073 3.927 5 N -0.528 5.528 6 C 0.191 3.809 7 C -0.503 4.503 8 H 0.080 0.920 9 C 0.054 3.946 10 N -0.899 5.899 11 Si 0.890 3.110 12 H -0.270 1.270 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.086 3.914 16 C -0.077 4.077 17 C -0.040 4.040 18 C -0.142 4.142 19 C -0.035 4.035 20 C -0.661 4.661 21 S 2.500 3.500 22 C -0.652 4.652 23 O -0.942 6.942 24 O -0.936 6.936 25 C -0.023 4.023 26 H 0.042 0.958 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.119 0.881 30 H 0.034 0.966 31 H 0.032 0.968 32 H 0.070 0.930 33 H 0.023 0.977 34 H 0.052 0.948 35 H 0.023 0.977 36 H -0.002 1.002 37 H 0.260 0.740 38 H 0.081 0.919 39 H 0.034 0.966 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.135 0.865 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.132 0.868 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.262 7.564 18.666 20.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.184 4.184 4 C -0.055 4.055 5 N -0.253 5.253 6 C 0.067 3.933 7 C -0.541 4.541 8 H 0.098 0.902 9 C -0.147 4.147 10 N -0.539 5.539 11 Si 0.718 3.282 12 H -0.195 1.195 13 H -0.211 1.211 14 H -0.212 1.212 15 C -0.042 4.042 16 C -0.078 4.078 17 C -0.058 4.058 18 C -0.161 4.161 19 C -0.054 4.054 20 C -0.748 4.748 21 S 2.680 3.320 22 C -0.801 4.801 23 O -0.939 6.939 24 O -0.934 6.934 25 C -0.042 4.042 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.136 0.864 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.016 0.984 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.052 0.948 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.153 0.847 43 H 0.149 0.851 44 H 0.147 0.853 45 H 0.150 0.850 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.838 8.196 18.233 20.191 hybrid contribution 0.529 -0.885 -0.705 1.249 sum -2.310 7.311 17.528 19.131 Atomic orbital electron populations 1.21846 0.97202 1.00740 1.00488 1.21561 0.92956 0.96973 1.01421 1.21619 1.02467 0.95530 0.98769 1.22017 0.88066 0.97818 0.97578 1.62128 1.07461 1.52660 1.03009 1.19832 0.94886 0.88808 0.89813 1.21435 1.43259 0.99744 0.89686 0.90229 1.25001 0.95621 0.94866 0.99230 1.69969 1.45965 1.07887 1.30046 0.86549 0.77668 0.79431 0.84511 1.19454 1.21143 1.21150 1.21080 1.00965 0.91901 0.90236 1.20147 0.94345 0.97339 0.95997 1.21417 0.98061 0.91772 0.94572 1.21260 0.98488 0.98816 0.97497 1.20807 0.91970 0.95683 0.96922 1.30292 1.21508 1.03679 1.19362 1.05087 0.75006 0.75193 0.76710 1.30243 1.13433 1.14782 1.21653 1.93570 1.84189 1.29839 1.86306 1.93601 1.56118 1.70373 1.73263 1.20854 0.95523 0.95603 0.92267 0.93857 0.93375 0.93414 0.86361 0.94735 0.94842 0.91148 0.95870 0.92955 0.95858 0.98433 0.93079 0.90085 0.94760 0.84950 0.85361 0.84695 0.85102 0.85272 0.84972 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.19 37.16 0.34 -2.14 16 2 C -0.11 -2.18 2.40 -90.62 -0.22 -2.40 16 3 C -0.13 -2.38 8.45 37.16 0.31 -2.07 16 4 C 0.07 1.43 4.24 -3.82 -0.02 1.42 16 5 N -0.53 -10.63 3.79 -237.52 -0.90 -11.53 16 6 C 0.19 4.68 4.76 -4.98 -0.02 4.65 16 7 C -0.50 -13.20 6.92 -34.44 -0.24 -13.44 16 8 H 0.08 2.05 4.66 -52.48 -0.24 1.81 16 9 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 10 N -0.90 -25.89 13.29 55.43 0.74 -25.15 16 11 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 C 0.09 1.44 5.11 -4.98 -0.03 1.41 16 16 C -0.08 -1.11 4.93 -104.62 -0.52 -1.63 16 17 C -0.04 -0.52 9.73 -39.58 -0.39 -0.91 16 18 C -0.14 -1.60 10.05 -39.58 -0.40 -2.00 16 19 C -0.03 -0.38 9.47 -39.59 -0.37 -0.76 16 20 C -0.66 -7.70 5.66 -39.59 -0.22 -7.93 16 21 S 2.50 24.84 5.80 -107.50 -0.62 24.22 16 22 C -0.65 -3.41 10.80 101.05 1.09 -2.31 16 23 O -0.94 -11.94 17.12 -57.54 -0.99 -12.92 16 24 O -0.94 -12.76 17.13 -57.54 -0.99 -13.74 16 25 C -0.02 -0.31 7.66 -39.58 -0.30 -0.61 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.12 2.71 4.81 -51.93 -0.25 2.46 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.43 6.84 -51.93 -0.35 1.08 16 33 H 0.02 0.47 7.78 -51.93 -0.40 0.07 16 34 H 0.05 0.96 5.88 -51.93 -0.31 0.65 16 35 H 0.02 0.60 7.64 -51.93 -0.40 0.20 16 36 H 0.00 -0.06 7.75 -51.93 -0.40 -0.46 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.08 1.31 7.67 -51.93 -0.40 0.92 16 39 H 0.03 0.55 7.95 -51.93 -0.41 0.14 16 40 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.14 1.20 7.57 -52.48 -0.40 0.80 16 43 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 44 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 45 H 0.13 0.55 8.14 -51.92 -0.42 0.13 16 46 H 0.14 1.73 7.45 -52.49 -0.39 1.34 16 LS Contribution 378.38 15.07 5.70 5.70 Total: -1.00 -33.50 378.38 -10.47 -43.97 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -7.32 Total: 0.68 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: -1.07 Total: -27.34 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.16 Total: -36.68 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -1.97 Total: -26.66 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 24.84 SS G_CDS: -0.62 Total: 24.22 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.50 -10.47 -43.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823382697.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.820 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds