Wall clock time and date at job start Tue Mar 31 2020 15:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47151 * 2 1 4 4 C 1.53006 * 109.46890 * 119.99741 * 2 1 3 5 5 N 1.46894 * 109.47222 * 178.41694 * 4 2 1 6 6 C 1.46900 * 111.00092 * 286.37924 * 5 4 2 7 7 C 1.50699 * 109.47189 * 76.05845 * 6 5 4 8 8 H 1.08004 * 120.00186 * 5.03213 * 7 6 5 9 9 C 1.37879 * 120.00200 * 185.03041 * 7 6 5 10 10 N 1.31520 * 119.99753 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00249 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47308 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47263 * 120.00061 * 11 9 7 14 14 H 1.48502 * 109.47345 * 240.00247 * 11 9 7 15 15 C 1.46898 * 111.00039 * 162.42016 * 5 4 2 16 16 C 1.50699 * 109.47395 * 288.16964 * 15 5 4 17 17 C 1.38260 * 119.99720 * 276.65030 * 16 15 5 18 18 C 1.38222 * 119.99526 * 179.97438 * 17 16 15 19 19 C 1.38249 * 119.99947 * 359.95844 * 18 17 16 20 20 C 1.38205 * 120.00319 * 0.07026 * 19 18 17 21 21 S 1.76200 * 120.00082 * 179.97438 * 20 19 18 22 22 C 1.81405 * 104.44858 * 269.94813 * 21 20 19 23 23 O 1.42097 * 104.28015 * 26.02019 * 21 20 19 24 24 O 1.42102 * 104.28184 * 153.88030 * 21 20 19 25 25 C 1.38212 * 120.00063 * 96.62849 * 16 15 5 26 26 H 1.08996 * 109.47426 * 300.00085 * 1 2 3 27 27 H 1.09004 * 109.46908 * 60.00534 * 1 2 3 28 28 H 1.09004 * 109.47215 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46789 * 239.99508 * 2 1 3 30 30 H 1.09003 * 109.46858 * 304.16374 * 3 2 1 31 31 H 1.09002 * 109.47332 * 64.16160 * 3 2 1 32 32 H 1.09001 * 109.47029 * 184.16678 * 3 2 1 33 33 H 1.09000 * 109.47243 * 58.41986 * 4 2 1 34 34 H 1.09002 * 109.47251 * 298.42123 * 4 2 1 35 35 H 1.09004 * 109.46832 * 196.05376 * 6 5 4 36 36 H 1.08994 * 109.47146 * 316.05559 * 6 5 4 37 37 H 0.96993 * 119.99599 * 179.97438 * 10 9 7 38 38 H 1.09006 * 109.46741 * 168.17006 * 15 5 4 39 39 H 1.09001 * 109.46907 * 48.17106 * 15 5 4 40 40 H 1.07992 * 120.00291 * 359.97438 * 17 16 15 41 41 H 1.08002 * 119.99439 * 179.97438 * 18 17 16 42 42 H 1.08009 * 119.99821 * 180.02562 * 19 18 17 43 43 H 1.09006 * 109.46992 * 59.99981 * 22 21 20 44 44 H 1.09002 * 109.47463 * 179.97438 * 22 21 20 45 45 H 1.09003 * 109.47189 * 300.00504 * 22 21 20 46 46 H 1.07997 * 119.99510 * 359.72709 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5084 -0.7545 1.2304 6 6 4.0004 -1.7213 0.2399 7 6 3.8562 -1.1408 -1.1433 8 1 3.5171 -0.1231 -1.2692 9 6 4.1570 -1.9088 -2.2481 10 7 4.5694 -3.1483 -2.0948 11 14 3.9776 -1.1895 -3.9627 12 1 3.5001 0.2132 -3.8636 13 1 5.2931 -1.2166 -4.6511 14 1 2.9973 -1.9930 -4.7365 15 6 4.0456 -1.0491 2.5656 16 6 3.8505 0.1474 3.4608 17 6 4.7616 1.1870 3.4334 18 6 4.5824 2.2847 4.2541 19 6 3.4918 2.3433 5.1017 20 6 2.5814 1.3038 5.1295 21 16 1.1918 1.3782 6.2103 22 6 1.7720 0.6086 7.7471 23 8 0.9707 2.7688 6.4016 24 8 0.2144 0.5607 5.5814 25 6 2.7608 0.2056 4.3089 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.6170 1.9774 -0.8504 31 1 1.7389 1.9344 0.9249 32 1 3.1275 1.4433 -0.0747 33 1 1.6537 -1.7404 1.2637 34 1 1.6999 -0.1913 2.1391 35 1 5.0506 -1.9387 0.4349 36 1 3.4198 -2.6410 0.3103 37 1 4.7807 -3.6886 -2.8721 38 1 5.1091 -1.2750 2.4876 39 1 3.5217 -1.9072 2.9867 40 1 5.6131 1.1415 2.7708 41 1 5.2943 3.0966 4.2330 42 1 3.3515 3.2012 5.7427 43 1 2.6211 1.1702 8.1367 44 1 0.9667 0.6120 8.4818 45 1 2.0770 -0.4185 7.5465 46 1 2.0466 -0.6043 4.3268 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823382697.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:38 Heat of formation + Delta-G solvation = -65.369069 kcal Electronic energy + Delta-G solvation = -26427.177163 eV Core-core repulsion = 22829.263596 eV Total energy + Delta-G solvation = -3597.913568 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.57640 -38.81461 -38.09544 -36.93643 -35.38979 -34.75024 -32.51098 -32.18273 -30.23515 -29.21264 -27.84963 -27.57191 -25.57758 -24.13549 -23.14337 -22.10398 -20.65892 -19.74809 -18.70966 -18.15681 -17.15808 -17.08880 -16.90184 -16.81616 -16.46111 -15.96579 -15.70209 -15.47085 -15.04572 -14.69691 -14.16815 -14.06011 -14.02297 -13.95544 -13.91029 -13.68422 -13.23792 -13.16470 -13.12281 -13.08157 -12.99448 -12.90695 -12.73201 -12.55565 -12.38612 -12.18009 -11.99794 -11.87920 -11.65410 -11.51841 -11.44141 -11.20666 -10.90788 -10.48097 -10.20785 -9.81486 -8.99305 -8.13704 -6.17405 -0.81283 -0.06338 0.34126 1.40523 1.42985 1.54757 1.96037 2.41333 2.51245 3.07455 3.18362 3.21522 3.43113 3.78145 3.88428 4.10369 4.13206 4.14263 4.22598 4.24200 4.32834 4.38981 4.49358 4.57376 4.66265 4.73127 4.78254 4.86485 4.90144 4.97913 5.00577 5.04961 5.09674 5.11995 5.15282 5.22682 5.29590 5.37306 5.42529 5.59927 5.62140 5.80236 5.86097 5.92904 6.14636 6.39224 6.65699 6.96631 7.47815 8.97078 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019550 B = 0.003437 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.895729 B = 8144.656505 C = 8552.075825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.114 4.114 3 C -0.117 4.117 4 C 0.077 3.923 5 N -0.527 5.527 6 C 0.207 3.793 7 C -0.503 4.503 8 H 0.084 0.916 9 C 0.001 3.999 10 N -0.938 5.938 11 Si 0.953 3.047 12 H -0.261 1.261 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.086 3.914 16 C -0.094 4.094 17 C -0.053 4.053 18 C -0.137 4.137 19 C -0.034 4.034 20 C -0.661 4.661 21 S 2.504 3.496 22 C -0.623 4.623 23 O -0.973 6.973 24 O -0.982 6.982 25 C -0.035 4.035 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.007 0.993 34 H 0.068 0.932 35 H 0.003 0.997 36 H -0.036 1.036 37 H 0.260 0.740 38 H 0.078 0.922 39 H 0.035 0.965 40 H 0.131 0.869 41 H 0.157 0.843 42 H 0.161 0.839 43 H 0.158 0.842 44 H 0.154 0.846 45 H 0.149 0.851 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.639 9.678 20.585 22.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.132 4.132 3 C -0.174 4.174 4 C -0.051 4.051 5 N -0.251 5.251 6 C 0.081 3.919 7 C -0.541 4.541 8 H 0.102 0.898 9 C -0.196 4.196 10 N -0.579 5.579 11 Si 0.779 3.221 12 H -0.184 1.184 13 H -0.209 1.209 14 H -0.210 1.210 15 C -0.042 4.042 16 C -0.095 4.095 17 C -0.071 4.071 18 C -0.156 4.156 19 C -0.053 4.053 20 C -0.747 4.747 21 S 2.688 3.312 22 C -0.777 4.777 23 O -0.970 6.970 24 O -0.979 6.979 25 C -0.055 4.055 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.025 0.975 34 H 0.086 0.914 35 H 0.022 0.978 36 H -0.018 1.018 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.149 0.851 41 H 0.175 0.825 42 H 0.178 0.822 43 H 0.176 0.824 44 H 0.172 0.828 45 H 0.167 0.833 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.220 10.347 20.116 22.849 hybrid contribution 0.653 -1.529 -1.106 1.997 sum -2.567 8.818 19.010 21.112 Atomic orbital electron populations 1.21782 0.95051 1.01147 1.01721 1.21492 0.94879 0.97158 0.99693 1.21499 1.01094 0.94985 0.99803 1.22010 0.87543 0.97148 0.98398 1.62061 1.07950 1.50875 1.04196 1.19493 0.93186 0.88353 0.90890 1.21743 1.42021 0.99832 0.90486 0.89802 1.25794 0.95588 0.95171 1.03055 1.70095 1.47541 1.09269 1.31020 0.85561 0.77560 0.79031 0.79949 1.18440 1.20852 1.21018 1.21096 1.00571 0.93581 0.88915 1.19912 0.95889 0.97006 0.96702 1.21510 0.97947 0.92274 0.95398 1.21576 0.99001 0.98633 0.96365 1.21208 0.91326 0.96021 0.96701 1.30556 1.21862 1.02984 1.19290 1.04885 0.74055 0.74400 0.77889 1.30024 1.15139 1.15208 1.17314 1.93528 1.84557 1.31916 1.87022 1.93546 1.57941 1.70869 1.75534 1.20860 0.95265 0.96513 0.92843 0.92648 0.92056 0.93501 0.89715 0.93492 0.93850 0.93126 0.97459 0.91389 0.97848 1.01779 0.93116 0.90361 0.94633 0.85116 0.82524 0.82152 0.82399 0.82782 0.83300 0.84888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 9.19 71.98 0.66 -3.97 16 2 C -0.11 -4.48 2.40 -10.79 -0.03 -4.51 16 3 C -0.12 -4.28 8.45 71.98 0.61 -3.67 16 4 C 0.08 3.08 4.24 86.31 0.37 3.44 16 5 N -0.53 -21.98 3.79 -905.37 -3.43 -25.42 16 6 C 0.21 10.63 4.76 85.56 0.41 11.04 16 7 C -0.50 -27.18 6.92 25.60 0.18 -27.00 16 8 H 0.08 4.40 4.66 -2.91 -0.01 4.39 16 9 C 0.00 0.06 5.46 84.65 0.46 0.52 16 10 N -0.94 -55.80 13.29 21.45 0.28 -55.51 16 11 Si 0.95 43.98 29.54 68.60 2.03 46.01 16 12 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 14 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 15 C 0.09 2.98 5.11 85.56 0.44 3.41 16 16 C -0.09 -2.71 4.93 -19.87 -0.10 -2.81 16 17 C -0.05 -1.35 9.73 22.27 0.22 -1.13 16 18 C -0.14 -2.77 10.05 22.27 0.22 -2.54 16 19 C -0.03 -0.65 9.47 22.26 0.21 -0.44 16 20 C -0.66 -14.20 5.66 22.27 0.13 -14.07 16 21 S 2.50 44.77 5.80 -56.49 -0.33 44.44 16 22 C -0.62 -3.81 10.80 113.37 1.22 -2.58 16 23 O -0.97 -22.77 17.12 -127.65 -2.19 -24.95 16 24 O -0.98 -26.05 17.13 -127.65 -2.19 -28.24 16 25 C -0.04 -0.92 7.66 22.27 0.17 -0.75 16 26 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 3.95 4.81 -2.39 -0.01 3.94 16 30 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.05 2.04 6.84 -2.39 -0.02 2.03 16 33 H 0.01 0.31 7.78 -2.39 -0.02 0.29 16 34 H 0.07 2.50 5.88 -2.39 -0.01 2.49 16 35 H 0.00 0.19 7.64 -2.38 -0.02 0.17 16 36 H -0.04 -2.04 7.75 -2.39 -0.02 -2.05 16 37 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 38 H 0.08 2.68 7.67 -2.38 -0.02 2.66 16 39 H 0.04 1.20 7.95 -2.39 -0.02 1.18 16 40 H 0.13 3.29 8.06 -2.91 -0.02 3.26 16 41 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 42 H 0.16 2.27 7.57 -2.91 -0.02 2.25 16 43 H 0.16 0.27 8.14 -2.39 -0.02 0.25 16 44 H 0.15 0.37 8.14 -2.39 -0.02 0.35 16 45 H 0.15 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.13 3.43 7.45 -2.91 -0.02 3.41 16 Total: -1.00 -74.88 378.38 0.30 -74.57 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.96 Total: 14.16 kcal Atomic # 6 Polarization: -50.23 SS G_CDS: 5.17 Total: -45.06 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -3.15 Total: -80.93 kcal Atomic # 8 Polarization: -48.82 SS G_CDS: -4.37 Total: -53.19 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: 44.77 SS G_CDS: -0.33 Total: 44.44 kcal Total: -74.88 0.30 -74.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823382697.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.205 kcal (2) G-P(sol) polarization free energy of solvation -74.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds