Wall clock time and date at job start Tue Mar 31 2020 14:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53009 * 109.46931 * 2 1 4 4 C 1.53004 * 109.46931 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46883 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46665 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.46724 * 304.99302 * 6 5 4 8 8 O 1.42891 * 109.47442 * 65.00086 * 6 5 4 9 9 C 1.50701 * 109.46762 * 185.00057 * 6 5 4 10 10 O 1.21297 * 120.00050 * 244.99894 * 9 6 5 11 11 N 1.34778 * 120.00319 * 64.99595 * 9 6 5 12 12 C 1.40093 * 120.00096 * 183.93667 * 11 9 6 13 13 C 1.38708 * 120.07354 * 334.48830 * 12 11 9 14 14 C 1.38189 * 120.01633 * 179.72420 * 13 12 11 15 15 C 1.38548 * 120.17752 * 0.27898 * 14 13 12 16 16 F 1.35099 * 119.92266 * 179.97438 * 15 14 13 17 17 C 1.38343 * 120.15623 * 0.02562 * 15 14 13 18 18 C 1.38742 * 119.97600 * 359.97438 * 17 15 14 19 19 O 1.35767 * 120.08759 * 180.02562 * 18 17 15 20 20 C 1.34808 * 117.00163 * 354.36614 * 19 18 17 21 21 H 1.08000 * 119.99944 * 354.63751 * 20 19 18 22 22 C 1.38632 * 119.99841 * 174.62917 * 20 19 18 23 23 N 1.31567 * 120.00361 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99996 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46872 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47002 * 120.00057 * 24 22 20 27 27 H 1.48496 * 109.46969 * 240.00294 * 24 22 20 28 28 H 1.09007 * 109.46850 * 299.99776 * 1 2 3 29 29 H 1.08991 * 109.47099 * 59.99693 * 1 2 3 30 30 H 1.08997 * 109.46816 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47005 * 240.00278 * 2 1 3 32 32 H 1.09002 * 109.47393 * 119.99875 * 2 1 3 33 33 H 1.08997 * 109.47049 * 60.00305 * 3 2 1 34 34 H 1.08995 * 109.47111 * 299.99736 * 3 2 1 35 35 H 1.08997 * 109.47005 * 60.00278 * 4 3 2 36 36 H 1.09008 * 109.47048 * 300.00093 * 4 3 2 37 37 H 1.08997 * 109.47242 * 60.00216 * 5 4 3 38 38 H 1.08995 * 109.46967 * 299.99618 * 5 4 3 39 39 H 0.96700 * 114.00572 * 59.99076 * 8 6 5 40 40 H 0.97006 * 119.99850 * 3.93656 * 11 9 6 41 41 H 1.07999 * 119.99098 * 0.02562 * 13 12 11 42 42 H 1.07996 * 119.90916 * 180.30173 * 14 13 12 43 43 H 1.08001 * 120.01509 * 179.97438 * 17 15 14 44 44 H 0.97003 * 120.00412 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5701 1.4426 -0.0006 5 6 4.0800 2.8851 0.0000 6 6 5.6100 2.8851 -0.0013 7 1 5.9740 2.2951 0.8399 8 8 6.0854 2.3166 -1.2231 9 6 6.1124 4.3004 0.1232 10 8 6.7324 4.8063 -0.7884 11 7 5.8729 5.0042 1.2474 12 6 6.2674 6.3458 1.3314 13 6 7.3197 6.8107 0.5565 14 6 7.7041 8.1356 0.6361 15 6 7.0447 9.0019 1.4930 16 9 7.4251 10.2961 1.5670 17 6 5.9983 8.5445 2.2737 18 6 5.6069 7.2155 2.1990 19 8 4.5799 6.7643 2.9638 20 6 4.0587 7.6268 3.8592 21 1 4.5140 8.5953 4.0043 22 6 2.9380 7.2706 4.5935 23 7 2.3835 6.0907 4.4169 24 14 2.2153 8.4661 5.8337 25 1 3.0175 9.7158 5.8421 26 1 0.8133 8.7810 5.4587 27 1 2.2402 7.8522 7.1855 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.9330 0.9290 -0.8909 36 1 3.9338 0.9286 0.8892 37 1 3.7171 3.3984 0.8904 38 1 3.7163 3.3994 -0.8895 39 1 5.7993 2.7915 -2.0154 40 1 5.4273 4.5817 1.9984 41 1 7.8356 6.1381 -0.1128 42 1 8.5205 8.4969 0.0284 43 1 5.4861 9.2216 2.9412 44 1 1.5996 5.8413 4.9310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827090094.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:50 Heat of formation + Delta-G solvation = -157.734702 kcal Electronic energy + Delta-G solvation = -27484.384085 eV Core-core repulsion = 23316.252067 eV Total energy + Delta-G solvation = -4168.132018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.28822 -40.43746 -38.94176 -37.25477 -36.27295 -35.62077 -34.26688 -32.48398 -32.34701 -29.68520 -29.15907 -27.72363 -25.58940 -24.85997 -22.57844 -21.81684 -21.49700 -21.07477 -20.18585 -18.42667 -18.20133 -17.32738 -16.96828 -16.06220 -15.98119 -15.34684 -15.30346 -15.15194 -15.00872 -14.44423 -14.35175 -14.21935 -13.68591 -13.66048 -13.54936 -13.48346 -13.28546 -13.05698 -12.39384 -12.28625 -12.14866 -11.93150 -11.73852 -11.60340 -11.43082 -11.19537 -11.02755 -10.95074 -10.92425 -10.82409 -10.56841 -10.53200 -10.42510 -9.87105 -9.79939 -9.11879 -9.01508 -7.94222 -7.15436 -6.66380 -4.24055 1.72780 2.06579 2.77091 3.01896 3.04633 3.09746 3.33646 3.80225 4.20560 4.31217 4.59353 4.77018 4.80799 4.83175 4.91203 4.93509 4.98959 5.05975 5.10810 5.30142 5.38359 5.56611 5.61065 5.65728 5.70468 5.70698 5.85260 5.88707 5.96587 5.98241 6.00953 6.13512 6.15013 6.27491 6.36336 6.51269 6.68057 6.85776 6.91127 6.97918 7.11740 7.44949 7.60020 7.76580 7.81866 8.36755 8.79944 9.39526 10.50567 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008163 B = 0.004205 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3429.188688 B = 6656.387259 C = 9829.064225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.123 4.123 4 C -0.112 4.112 5 C -0.151 4.151 6 C 0.098 3.902 7 H 0.124 0.876 8 O -0.538 6.538 9 C 0.479 3.521 10 O -0.531 6.531 11 N -0.641 5.641 12 C 0.057 3.943 13 C -0.064 4.064 14 C -0.228 4.228 15 C 0.128 3.872 16 F -0.151 7.151 17 C -0.258 4.258 18 C 0.156 3.844 19 O -0.170 6.170 20 C -0.392 4.392 21 H 0.095 0.905 22 C 0.044 3.956 23 N -0.858 5.858 24 Si 0.941 3.059 25 H -0.265 1.265 26 H -0.275 1.275 27 H -0.274 1.274 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.382 0.618 40 H 0.417 0.583 41 H 0.155 0.845 42 H 0.123 0.877 43 H 0.143 0.857 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.348 -8.390 -6.067 10.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.161 4.161 4 C -0.149 4.149 5 C -0.189 4.189 6 C 0.035 3.965 7 H 0.142 0.858 8 O -0.343 6.343 9 C 0.266 3.734 10 O -0.409 6.409 11 N -0.285 5.285 12 C -0.038 4.038 13 C -0.084 4.084 14 C -0.248 4.248 15 C 0.108 3.892 16 F -0.130 7.130 17 C -0.278 4.278 18 C 0.100 3.900 19 O -0.073 6.073 20 C -0.468 4.468 21 H 0.112 0.888 22 C -0.161 4.161 23 N -0.492 5.492 24 Si 0.766 3.234 25 H -0.189 1.189 26 H -0.200 1.200 27 H -0.200 1.200 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.231 0.769 40 H 0.254 0.746 41 H 0.172 0.828 42 H 0.141 0.859 43 H 0.161 0.839 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.709 -8.826 -6.203 10.811 hybrid contribution -0.889 1.312 0.767 1.761 sum -0.180 -7.514 -5.436 9.276 Atomic orbital electron populations 1.21786 0.96075 1.01311 1.01957 1.21521 0.95726 0.97061 1.01810 1.21649 0.95283 0.96651 1.02514 1.21508 0.95308 0.95499 1.02594 1.22303 0.93312 0.98793 1.04476 1.21827 0.94310 0.90506 0.89844 0.85820 1.86549 1.77469 1.55120 1.15168 1.21680 0.80405 0.89286 0.82039 1.90593 1.40119 1.70460 1.39718 1.43206 1.58026 1.10082 1.17196 1.16982 0.99205 0.83493 1.04073 1.21057 0.93906 0.95341 0.98106 1.20545 1.05244 0.93960 1.05071 1.17499 0.95836 0.77877 0.97972 1.91413 1.90647 1.35455 1.95495 1.20854 1.02652 0.96750 1.07586 1.18742 0.89358 0.90412 0.91470 1.83908 1.40038 1.39683 1.43632 1.21387 1.11659 0.98771 1.14996 0.88790 1.25270 0.95305 0.97304 0.98221 1.70004 1.20741 1.19057 1.39398 0.85628 0.79094 0.79439 0.79256 1.18946 1.20012 1.19981 0.92575 0.92867 0.93037 0.92263 0.92066 0.91459 0.92122 0.91359 0.91742 0.89439 0.90983 0.76938 0.74632 0.82763 0.85918 0.83920 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.12 -1.12 5.93 -26.72 -0.16 -1.28 16 3 C -0.12 -1.25 5.22 -26.72 -0.14 -1.39 16 4 C -0.11 -1.13 5.11 -26.73 -0.14 -1.26 16 5 C -0.15 -1.74 4.86 -26.73 -0.13 -1.87 16 6 C 0.10 1.21 3.38 -27.88 -0.09 1.11 16 7 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 8 O -0.54 -6.71 12.53 -55.09 -0.69 -7.40 16 9 C 0.48 7.66 7.06 -10.98 -0.08 7.58 16 10 O -0.53 -9.79 13.25 -14.32 -0.19 -9.98 16 11 N -0.64 -11.18 5.17 -9.71 -0.05 -11.23 16 12 C 0.06 1.15 6.47 -83.45 -0.54 0.61 16 13 C -0.06 -1.22 8.79 -39.43 -0.35 -1.57 16 14 C -0.23 -4.22 10.02 -39.48 -0.40 -4.62 16 15 C 0.13 2.54 7.29 -39.43 -0.29 2.25 16 16 F -0.15 -2.88 17.26 2.25 0.04 -2.85 16 17 C -0.26 -5.54 9.11 -39.36 -0.36 -5.90 16 18 C 0.16 3.50 6.66 -38.94 -0.26 3.24 16 19 O -0.17 -4.27 9.18 0.06 0.00 -4.27 16 20 C -0.39 -10.05 9.44 30.88 0.29 -9.76 16 21 H 0.09 2.29 5.29 -52.49 -0.28 2.01 16 22 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 23 N -0.86 -22.61 13.67 55.48 0.76 -21.86 16 24 Si 0.94 19.24 29.55 -169.99 -5.02 14.21 16 25 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 26 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 27 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.67 7.82 -51.93 -0.41 0.27 16 36 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 37 H 0.09 1.13 7.89 -51.93 -0.41 0.73 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.38 3.99 8.79 45.56 0.40 4.39 16 40 H 0.42 6.96 8.19 -40.82 -0.33 6.62 16 41 H 0.16 2.90 5.52 -52.49 -0.29 2.61 16 42 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 43 H 0.14 3.07 5.71 -52.49 -0.30 2.78 16 44 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 LS Contribution 373.69 15.07 5.63 5.63 Total: -1.00 -28.77 373.69 -7.29 -36.06 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -5.40 Total: 14.47 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -2.36 Total: -12.80 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.71 Total: -33.09 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.88 Total: -21.64 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.77 -7.29 -36.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827090094.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.679 kcal (2) G-P(sol) polarization free energy of solvation -28.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds