Wall clock time and date at job start Tue Mar 31 2020 14:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53009 * 109.46931 * 2 1 4 4 C 1.53004 * 109.46931 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46883 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46665 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.46724 * 304.99302 * 6 5 4 8 8 O 1.42891 * 109.47442 * 65.00086 * 6 5 4 9 9 C 1.50701 * 109.46762 * 185.00057 * 6 5 4 10 10 O 1.21297 * 120.00050 * 244.99894 * 9 6 5 11 11 N 1.34778 * 120.00319 * 64.99595 * 9 6 5 12 12 C 1.40093 * 120.00096 * 183.93667 * 11 9 6 13 13 C 1.38708 * 120.07354 * 334.48830 * 12 11 9 14 14 C 1.38189 * 120.01633 * 179.72420 * 13 12 11 15 15 C 1.38548 * 120.17752 * 0.27898 * 14 13 12 16 16 F 1.35099 * 119.92266 * 179.97438 * 15 14 13 17 17 C 1.38343 * 120.15623 * 0.02562 * 15 14 13 18 18 C 1.38742 * 119.97600 * 359.97438 * 17 15 14 19 19 O 1.35767 * 120.08759 * 180.02562 * 18 17 15 20 20 C 1.34808 * 117.00163 * 354.36614 * 19 18 17 21 21 H 1.08000 * 119.99944 * 354.63751 * 20 19 18 22 22 C 1.38632 * 119.99841 * 174.62917 * 20 19 18 23 23 N 1.31567 * 120.00361 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99996 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46872 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47002 * 120.00057 * 24 22 20 27 27 H 1.48496 * 109.46969 * 240.00294 * 24 22 20 28 28 H 1.09007 * 109.46850 * 299.99776 * 1 2 3 29 29 H 1.08991 * 109.47099 * 59.99693 * 1 2 3 30 30 H 1.08997 * 109.46816 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47005 * 240.00278 * 2 1 3 32 32 H 1.09002 * 109.47393 * 119.99875 * 2 1 3 33 33 H 1.08997 * 109.47049 * 60.00305 * 3 2 1 34 34 H 1.08995 * 109.47111 * 299.99736 * 3 2 1 35 35 H 1.08997 * 109.47005 * 60.00278 * 4 3 2 36 36 H 1.09008 * 109.47048 * 300.00093 * 4 3 2 37 37 H 1.08997 * 109.47242 * 60.00216 * 5 4 3 38 38 H 1.08995 * 109.46967 * 299.99618 * 5 4 3 39 39 H 0.96700 * 114.00572 * 59.99076 * 8 6 5 40 40 H 0.97006 * 119.99850 * 3.93656 * 11 9 6 41 41 H 1.07999 * 119.99098 * 0.02562 * 13 12 11 42 42 H 1.07996 * 119.90916 * 180.30173 * 14 13 12 43 43 H 1.08001 * 120.01509 * 179.97438 * 17 15 14 44 44 H 0.97003 * 120.00412 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5701 1.4426 -0.0006 5 6 4.0800 2.8851 0.0000 6 6 5.6100 2.8851 -0.0013 7 1 5.9740 2.2951 0.8399 8 8 6.0854 2.3166 -1.2231 9 6 6.1124 4.3004 0.1232 10 8 6.7324 4.8063 -0.7884 11 7 5.8729 5.0042 1.2474 12 6 6.2674 6.3458 1.3314 13 6 7.3197 6.8107 0.5565 14 6 7.7041 8.1356 0.6361 15 6 7.0447 9.0019 1.4930 16 9 7.4251 10.2961 1.5670 17 6 5.9983 8.5445 2.2737 18 6 5.6069 7.2155 2.1990 19 8 4.5799 6.7643 2.9638 20 6 4.0587 7.6268 3.8592 21 1 4.5140 8.5953 4.0043 22 6 2.9380 7.2706 4.5935 23 7 2.3835 6.0907 4.4169 24 14 2.2153 8.4661 5.8337 25 1 3.0175 9.7158 5.8421 26 1 0.8133 8.7810 5.4587 27 1 2.2402 7.8522 7.1855 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.9330 0.9290 -0.8909 36 1 3.9338 0.9286 0.8892 37 1 3.7171 3.3984 0.8904 38 1 3.7163 3.3994 -0.8895 39 1 5.7993 2.7915 -2.0154 40 1 5.4273 4.5817 1.9984 41 1 7.8356 6.1381 -0.1128 42 1 8.5205 8.4969 0.0284 43 1 5.4861 9.2216 2.9412 44 1 1.5996 5.8413 4.9310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827090094.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:49 Heat of formation + Delta-G solvation = -174.368400 kcal Electronic energy + Delta-G solvation = -27485.105376 eV Core-core repulsion = 23316.252067 eV Total energy + Delta-G solvation = -4168.853310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.85388 -41.86500 -40.49112 -38.51960 -37.72174 -36.54408 -35.68985 -34.31893 -33.27090 -31.21367 -30.55654 -28.94573 -27.40833 -25.89269 -24.13402 -23.26282 -22.51682 -21.93944 -21.46536 -20.18808 -19.69704 -18.79187 -18.41927 -17.20708 -17.06151 -16.95531 -16.84480 -16.57352 -16.22702 -15.96929 -15.71599 -15.44920 -15.33438 -15.27711 -14.90011 -14.39061 -14.29415 -14.04735 -14.03357 -13.80513 -13.46047 -13.20478 -13.00683 -12.80075 -12.64321 -12.54913 -12.32303 -12.13402 -12.02961 -11.74843 -11.74341 -11.69829 -11.50683 -11.34134 -11.26635 -10.84293 -10.42416 -9.59429 -8.77440 -8.52082 -6.17679 0.13343 0.42717 1.37536 1.42044 1.43158 1.52812 1.98367 2.13739 2.64430 3.02019 3.14186 3.23222 3.42317 3.53808 3.75205 3.91834 3.95126 4.05328 4.14969 4.16662 4.31417 4.34347 4.47375 4.55367 4.60088 4.76762 4.78727 4.92462 4.94148 4.99128 5.03574 5.09299 5.17334 5.20012 5.24053 5.28288 5.33061 5.37438 5.47207 5.48421 5.55223 5.91840 6.00898 6.34119 6.60405 6.92651 7.00017 7.59320 8.68081 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008163 B = 0.004205 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3429.188688 B = 6656.387259 C = 9829.064225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.123 4.123 4 C -0.104 4.104 5 C -0.144 4.144 6 C 0.112 3.888 7 H 0.144 0.856 8 O -0.541 6.541 9 C 0.480 3.520 10 O -0.553 6.553 11 N -0.643 5.643 12 C 0.060 3.940 13 C -0.067 4.067 14 C -0.205 4.205 15 C 0.120 3.880 16 F -0.145 7.145 17 C -0.264 4.264 18 C 0.131 3.869 19 O -0.200 6.200 20 C -0.416 4.416 21 H 0.097 0.903 22 C -0.005 4.005 23 N -0.900 5.900 24 Si 1.008 2.992 25 H -0.258 1.258 26 H -0.270 1.270 27 H -0.267 1.267 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.391 0.609 40 H 0.419 0.581 41 H 0.165 0.835 42 H 0.156 0.844 43 H 0.136 0.864 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.125 -8.749 -6.821 11.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.161 4.161 4 C -0.142 4.142 5 C -0.182 4.182 6 C 0.049 3.951 7 H 0.161 0.839 8 O -0.346 6.346 9 C 0.269 3.731 10 O -0.432 6.432 11 N -0.287 5.287 12 C -0.036 4.036 13 C -0.087 4.087 14 C -0.225 4.225 15 C 0.101 3.899 16 F -0.124 7.124 17 C -0.285 4.285 18 C 0.077 3.923 19 O -0.105 6.105 20 C -0.491 4.491 21 H 0.115 0.885 22 C -0.205 4.205 23 N -0.536 5.536 24 Si 0.829 3.171 25 H -0.182 1.182 26 H -0.195 1.195 27 H -0.192 1.192 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.241 0.759 40 H 0.256 0.744 41 H 0.182 0.818 42 H 0.174 0.826 43 H 0.153 0.847 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.514 -9.189 -6.990 11.645 hybrid contribution -0.953 1.430 0.809 1.900 sum 0.562 -7.759 -6.180 9.936 Atomic orbital electron populations 1.21799 0.95927 1.01941 1.01592 1.21510 0.95889 0.96150 1.02369 1.21634 0.95416 0.97416 1.01622 1.21459 0.95095 0.94312 1.03296 1.22233 0.92670 0.99781 1.03537 1.21822 0.94512 0.88101 0.90647 0.83906 1.86545 1.77575 1.55057 1.15470 1.22413 0.79381 0.90363 0.80935 1.90565 1.41102 1.71302 1.40214 1.43325 1.58169 1.09254 1.17998 1.17248 0.98765 0.84540 1.03019 1.21252 0.93606 0.95882 0.97975 1.20927 1.04732 0.93248 1.03545 1.17498 0.95767 0.78426 0.98253 1.91427 1.90495 1.34990 1.95480 1.20933 1.03214 0.96522 1.07804 1.19076 0.89471 0.91336 0.92382 1.83887 1.41555 1.40211 1.44837 1.21735 1.12348 0.99165 1.15893 0.88522 1.26302 0.95351 0.98994 0.99857 1.70104 1.21610 1.20879 1.41022 0.84659 0.78238 0.77391 0.76847 1.18191 1.19504 1.19186 0.93438 0.92773 0.91917 0.91260 0.91885 0.93190 0.92227 0.90420 0.91156 0.91199 0.91173 0.75892 0.74372 0.81841 0.82609 0.84657 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.91 71.98 0.71 -1.85 16 2 C -0.12 -2.05 5.93 30.60 0.18 -1.87 16 3 C -0.12 -2.43 5.22 30.60 0.16 -2.27 16 4 C -0.10 -1.96 5.11 30.60 0.16 -1.80 16 5 C -0.14 -3.22 4.86 30.60 0.15 -3.07 16 6 C 0.11 2.60 3.38 29.85 0.10 2.70 16 7 H 0.14 2.83 8.14 -2.39 -0.02 2.81 16 8 O -0.54 -12.30 12.53 -129.99 -1.63 -13.93 16 9 C 0.48 14.91 7.06 87.66 0.62 15.53 16 10 O -0.55 -19.60 13.25 15.91 0.21 -19.39 16 11 N -0.64 -22.44 5.17 -303.03 -1.57 -24.01 16 12 C 0.06 2.40 6.47 38.23 0.25 2.64 16 13 C -0.07 -2.46 8.79 22.37 0.20 -2.26 16 14 C -0.20 -7.09 10.02 22.33 0.22 -6.87 16 15 C 0.12 4.63 7.29 22.37 0.16 4.79 16 16 F -0.15 -5.29 17.26 44.97 0.78 -4.51 16 17 C -0.26 -11.45 9.11 22.42 0.20 -11.25 16 18 C 0.13 6.00 6.66 22.69 0.15 6.15 16 19 O -0.20 -10.44 9.18 -22.71 -0.21 -10.65 16 20 C -0.42 -21.98 9.44 67.91 0.64 -21.34 16 21 H 0.10 4.85 5.29 -2.91 -0.02 4.84 16 22 C 0.00 -0.24 5.49 84.83 0.47 0.22 16 23 N -0.90 -48.88 13.67 21.61 0.30 -48.59 16 24 Si 1.01 39.82 29.55 68.60 2.03 41.84 16 25 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 26 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 27 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 28 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 1.35 7.82 -2.39 -0.02 1.33 16 36 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.07 1.85 7.89 -2.39 -0.02 1.83 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.39 7.40 8.79 -74.06 -0.65 6.74 16 40 H 0.42 14.31 8.19 -92.70 -0.76 13.55 16 41 H 0.16 5.81 5.52 -2.91 -0.02 5.79 16 42 H 0.16 4.38 8.06 -2.91 -0.02 4.36 16 43 H 0.14 5.98 5.71 -2.91 -0.02 5.96 16 44 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -61.89 373.69 3.92 -57.97 By element: Atomic # 1 Polarization: 42.19 SS G_CDS: -0.36 Total: 41.82 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: 4.37 Total: -20.55 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -1.27 Total: -72.59 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -1.63 Total: -43.98 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.78 Total: -4.51 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.84 kcal Total: -61.89 3.92 -57.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827090094.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.398 kcal (2) G-P(sol) polarization free energy of solvation -61.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds