Wall clock time and date at job start Tue Mar 31 2020 14:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47424 * 2 1 4 4 C 1.53002 * 109.47289 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47289 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47437 * 179.97438 * 5 4 3 7 7 H 1.09009 * 109.46424 * 54.99797 * 6 5 4 8 8 O 1.42890 * 109.47059 * 295.00045 * 6 5 4 9 9 C 1.50702 * 109.47269 * 174.99337 * 6 5 4 10 10 O 1.21298 * 119.99165 * 115.00165 * 9 6 5 11 11 N 1.34767 * 120.00502 * 295.00588 * 9 6 5 12 12 C 1.40083 * 120.00347 * 183.92234 * 11 9 6 13 13 C 1.38710 * 120.07716 * 334.50071 * 12 11 9 14 14 C 1.38184 * 120.02290 * 179.70089 * 13 12 11 15 15 C 1.38552 * 120.17821 * 0.27030 * 14 13 12 16 16 F 1.35099 * 119.92243 * 180.02562 * 15 14 13 17 17 C 1.38347 * 120.15342 * 359.97438 * 15 14 13 18 18 C 1.38739 * 119.97547 * 0.02562 * 17 15 14 19 19 O 1.35772 * 120.08728 * 179.97438 * 18 17 15 20 20 C 1.34808 * 117.00001 * 354.37534 * 19 18 17 21 21 H 1.07998 * 119.99594 * 354.62966 * 20 19 18 22 22 C 1.38638 * 119.99682 * 174.62764 * 20 19 18 23 23 N 1.31568 * 119.99492 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00367 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.46786 * 89.99715 * 24 22 20 26 26 H 1.48502 * 109.47050 * 210.00068 * 24 22 20 27 27 H 1.48496 * 109.46783 * 330.00009 * 24 22 20 28 28 H 1.09005 * 109.47476 * 300.00652 * 1 2 3 29 29 H 1.09007 * 109.47306 * 60.00028 * 1 2 3 30 30 H 1.08998 * 109.47891 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47201 * 239.99378 * 2 1 3 32 32 H 1.09007 * 109.46874 * 119.99653 * 2 1 3 33 33 H 1.08997 * 109.47439 * 59.99524 * 3 2 1 34 34 H 1.09004 * 109.47321 * 299.99647 * 3 2 1 35 35 H 1.08997 * 109.47436 * 59.99317 * 4 3 2 36 36 H 1.09007 * 109.46774 * 299.99509 * 4 3 2 37 37 H 1.09001 * 109.47819 * 59.99602 * 5 4 3 38 38 H 1.09004 * 109.47321 * 299.99442 * 5 4 3 39 39 H 0.96696 * 114.00368 * 299.99240 * 8 6 5 40 40 H 0.97002 * 120.00166 * 3.91922 * 11 9 6 41 41 H 1.08001 * 119.98510 * 359.96771 * 13 12 11 42 42 H 1.08002 * 119.91317 * 180.29378 * 14 13 12 43 43 H 1.08000 * 120.01232 * 179.97438 * 17 15 14 44 44 H 0.97000 * 120.00050 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8848 0.0000 6 6 5.6101 2.8848 0.0000 7 1 5.9733 2.2956 -0.8422 8 8 6.0864 2.3149 1.2207 9 6 6.1125 4.3003 -0.1234 10 8 6.7332 4.8050 0.7884 11 7 5.8720 5.0052 -1.2465 12 6 6.4085 6.2907 -1.3950 13 6 6.7143 7.0500 -0.2752 14 6 7.2493 8.3155 -0.4229 15 6 7.4767 8.8322 -1.6882 16 9 8.0004 10.0698 -1.8266 17 6 7.1697 8.0833 -2.8102 18 6 6.6323 6.8119 -2.6692 19 8 6.3297 6.0752 -3.7688 20 6 6.4655 6.6789 -4.9664 21 1 6.7177 7.7278 -5.0168 22 6 6.2816 5.9532 -6.1333 23 7 6.4136 6.5426 -7.3021 24 14 5.8448 4.1391 -6.0460 25 1 4.3680 3.9867 -6.0124 26 1 6.3875 3.4414 -7.2393 27 1 6.4316 3.5473 -4.8170 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9330 0.9286 -0.8907 36 1 3.9337 0.9284 0.8892 37 1 3.7171 3.3983 0.8904 38 1 3.7165 3.3992 -0.8896 39 1 5.8012 2.7890 2.0138 40 1 5.3275 4.6226 -1.9521 41 1 6.5383 6.6502 0.7126 42 1 7.4912 8.9033 0.4503 43 1 7.3475 8.4884 -3.7954 44 1 6.2846 6.0350 -8.1186 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827090095.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:54 Heat of formation + Delta-G solvation = -154.500178 kcal Electronic energy + Delta-G solvation = -27422.031497 eV Core-core repulsion = 23254.039738 eV Total energy + Delta-G solvation = -4167.991759 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.33121 -40.60766 -39.12802 -37.44123 -36.45260 -35.79453 -34.43781 -32.61164 -32.51511 -29.82936 -29.40125 -27.91613 -25.55346 -25.01289 -22.65753 -21.92156 -21.62390 -21.27978 -20.31925 -18.51452 -18.22097 -17.56379 -17.08967 -16.27544 -16.16568 -15.63250 -15.44811 -15.13207 -15.08912 -14.64035 -14.39379 -14.17324 -13.92129 -13.80784 -13.63182 -13.52809 -13.39156 -13.32513 -12.54760 -12.41422 -12.28238 -12.17099 -11.95662 -11.74660 -11.54110 -11.37805 -11.15395 -11.12929 -11.02937 -10.87963 -10.74790 -10.64683 -10.52786 -9.94726 -9.79685 -9.25405 -9.06043 -8.04707 -7.30683 -6.59959 -4.27732 1.61497 1.95244 2.63024 3.05863 3.08431 3.15884 3.19270 4.03632 4.05806 4.18739 4.37626 4.45041 4.59063 4.62809 4.74039 4.81210 4.89033 4.91542 4.92672 5.11929 5.19532 5.38091 5.44694 5.46302 5.51172 5.61980 5.63989 5.66219 5.76747 5.80456 5.84195 5.93995 5.99078 6.06584 6.13525 6.33481 6.63813 6.75179 6.81522 6.87409 7.31484 7.39078 7.55861 7.64487 7.81113 8.20485 8.72598 9.26328 10.47125 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009048 B = 0.003916 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.746977 B = 7147.917432 C = 9483.473214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.115 4.115 5 C -0.150 4.150 6 C 0.096 3.904 7 H 0.126 0.874 8 O -0.535 6.535 9 C 0.479 3.521 10 O -0.526 6.526 11 N -0.645 5.645 12 C 0.057 3.943 13 C -0.064 4.064 14 C -0.221 4.221 15 C 0.129 3.871 16 F -0.148 7.148 17 C -0.245 4.245 18 C 0.163 3.837 19 O -0.209 6.209 20 C -0.392 4.392 21 H 0.109 0.891 22 C 0.067 3.933 23 N -0.870 5.870 24 Si 0.903 3.097 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.259 1.259 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.382 0.618 40 H 0.413 0.587 41 H 0.156 0.844 42 H 0.125 0.875 43 H 0.150 0.850 44 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.284 -9.618 13.453 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.160 4.160 4 C -0.153 4.153 5 C -0.188 4.188 6 C 0.033 3.967 7 H 0.144 0.856 8 O -0.340 6.340 9 C 0.266 3.734 10 O -0.403 6.403 11 N -0.289 5.289 12 C -0.037 4.037 13 C -0.084 4.084 14 C -0.241 4.241 15 C 0.109 3.891 16 F -0.127 7.127 17 C -0.265 4.265 18 C 0.109 3.891 19 O -0.114 6.114 20 C -0.467 4.467 21 H 0.126 0.874 22 C -0.138 4.138 23 N -0.506 5.506 24 Si 0.728 3.272 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.183 1.183 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.230 0.770 40 H 0.249 0.751 41 H 0.173 0.827 42 H 0.143 0.857 43 H 0.167 0.833 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.642 -9.969 13.396 18.364 hybrid contribution -0.472 -0.007 -0.492 0.682 sum -8.114 -9.976 12.903 18.217 Atomic orbital electron populations 1.21785 0.96002 1.01496 1.01831 1.21528 0.95759 0.96953 1.02045 1.21642 0.95255 0.96840 1.02221 1.21545 0.95252 0.95470 1.03023 1.22308 0.93652 0.98931 1.03911 1.21871 0.94030 0.90650 0.90177 0.85603 1.86588 1.77426 1.54916 1.15038 1.21671 0.80246 0.88877 0.82563 1.90607 1.40347 1.70267 1.39076 1.43201 1.50683 1.14844 1.20203 1.16987 1.09149 0.86485 0.91115 1.21026 0.97080 0.91845 0.98436 1.20604 1.10390 0.97839 0.95292 1.17505 0.97446 0.80085 0.94084 1.91430 1.84347 1.40083 1.96851 1.20979 1.10182 0.96032 0.99342 1.18460 0.94035 0.90571 0.86078 1.83504 1.75430 1.39284 1.13154 1.20761 1.50088 0.96896 0.78976 0.87363 1.24477 0.95761 1.00090 0.93458 1.69640 1.45959 1.37698 0.97352 0.86227 0.79254 0.83031 0.78694 1.19597 1.20512 1.18306 0.92830 0.92700 0.92898 0.91992 0.92075 0.92020 0.91829 0.91583 0.91026 0.90737 0.90197 0.76975 0.75116 0.82706 0.85694 0.83278 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.15 0.37 -0.66 16 2 C -0.13 -0.89 5.93 -26.74 -0.16 -1.05 16 3 C -0.12 -0.91 5.21 -26.73 -0.14 -1.05 16 4 C -0.12 -0.92 5.11 -26.73 -0.14 -1.05 16 5 C -0.15 -1.31 4.86 -26.73 -0.13 -1.44 16 6 C 0.10 1.06 3.38 -27.88 -0.09 0.96 16 7 H 0.13 1.33 8.14 -51.92 -0.42 0.91 16 8 O -0.54 -6.11 12.53 -55.09 -0.69 -6.80 16 9 C 0.48 7.03 7.06 -10.99 -0.08 6.96 16 10 O -0.53 -9.05 13.25 -14.32 -0.19 -9.24 16 11 N -0.64 -10.29 5.20 -9.72 -0.05 -10.34 16 12 C 0.06 1.08 6.48 -83.45 -0.54 0.54 16 13 C -0.06 -1.15 8.79 -39.43 -0.35 -1.49 16 14 C -0.22 -3.91 10.02 -39.49 -0.40 -4.31 16 15 C 0.13 2.50 7.29 -39.43 -0.29 2.21 16 16 F -0.15 -2.82 17.26 2.25 0.04 -2.78 16 17 C -0.24 -5.21 9.11 -39.36 -0.36 -5.57 16 18 C 0.16 3.51 6.66 -38.93 -0.26 3.25 16 19 O -0.21 -4.92 8.01 0.04 0.00 -4.91 16 20 C -0.39 -10.23 9.90 30.88 0.31 -9.93 16 21 H 0.11 2.95 5.52 -52.49 -0.29 2.66 16 22 C 0.07 1.74 5.49 -17.52 -0.10 1.65 16 23 N -0.87 -23.78 13.96 55.48 0.77 -23.00 16 24 Si 0.90 19.58 28.62 -169.99 -4.86 14.72 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 26 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.58 7.82 -51.93 -0.41 0.17 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.69 7.67 -51.93 -0.40 0.29 16 39 H 0.38 3.41 8.79 45.56 0.40 3.81 16 40 H 0.41 6.01 7.94 -40.82 -0.32 5.69 16 41 H 0.16 2.68 5.52 -52.49 -0.29 2.39 16 42 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 43 H 0.15 3.34 5.71 -52.49 -0.30 3.04 16 44 H 0.28 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -29.15 372.12 -7.11 -36.26 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -5.39 Total: 11.48 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -2.35 Total: -10.99 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.72 Total: -33.34 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.88 Total: -20.95 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.04 Total: -2.78 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.86 Total: 14.72 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.15 -7.11 -36.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827090095.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.241 kcal (2) G-P(sol) polarization free energy of solvation -29.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds