Wall clock time and date at job start Tue Mar 31 2020 14:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47424 * 2 1 4 4 C 1.53002 * 109.47289 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47289 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47437 * 179.97438 * 5 4 3 7 7 H 1.09009 * 109.46424 * 54.99797 * 6 5 4 8 8 O 1.42890 * 109.47059 * 295.00045 * 6 5 4 9 9 C 1.50702 * 109.47269 * 174.99337 * 6 5 4 10 10 O 1.21298 * 119.99165 * 115.00165 * 9 6 5 11 11 N 1.34767 * 120.00502 * 295.00588 * 9 6 5 12 12 C 1.40083 * 120.00347 * 183.92234 * 11 9 6 13 13 C 1.38710 * 120.07716 * 334.50071 * 12 11 9 14 14 C 1.38184 * 120.02290 * 179.70089 * 13 12 11 15 15 C 1.38552 * 120.17821 * 0.27030 * 14 13 12 16 16 F 1.35099 * 119.92243 * 180.02562 * 15 14 13 17 17 C 1.38347 * 120.15342 * 359.97438 * 15 14 13 18 18 C 1.38739 * 119.97547 * 0.02562 * 17 15 14 19 19 O 1.35772 * 120.08728 * 179.97438 * 18 17 15 20 20 C 1.34808 * 117.00001 * 354.37534 * 19 18 17 21 21 H 1.07998 * 119.99594 * 354.62966 * 20 19 18 22 22 C 1.38638 * 119.99682 * 174.62764 * 20 19 18 23 23 N 1.31568 * 119.99492 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00367 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.46786 * 89.99715 * 24 22 20 26 26 H 1.48502 * 109.47050 * 210.00068 * 24 22 20 27 27 H 1.48496 * 109.46783 * 330.00009 * 24 22 20 28 28 H 1.09005 * 109.47476 * 300.00652 * 1 2 3 29 29 H 1.09007 * 109.47306 * 60.00028 * 1 2 3 30 30 H 1.08998 * 109.47891 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47201 * 239.99378 * 2 1 3 32 32 H 1.09007 * 109.46874 * 119.99653 * 2 1 3 33 33 H 1.08997 * 109.47439 * 59.99524 * 3 2 1 34 34 H 1.09004 * 109.47321 * 299.99647 * 3 2 1 35 35 H 1.08997 * 109.47436 * 59.99317 * 4 3 2 36 36 H 1.09007 * 109.46774 * 299.99509 * 4 3 2 37 37 H 1.09001 * 109.47819 * 59.99602 * 5 4 3 38 38 H 1.09004 * 109.47321 * 299.99442 * 5 4 3 39 39 H 0.96696 * 114.00368 * 299.99240 * 8 6 5 40 40 H 0.97002 * 120.00166 * 3.91922 * 11 9 6 41 41 H 1.08001 * 119.98510 * 359.96771 * 13 12 11 42 42 H 1.08002 * 119.91317 * 180.29378 * 14 13 12 43 43 H 1.08000 * 120.01232 * 179.97438 * 17 15 14 44 44 H 0.97000 * 120.00050 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8848 0.0000 6 6 5.6101 2.8848 0.0000 7 1 5.9733 2.2956 -0.8422 8 8 6.0864 2.3149 1.2207 9 6 6.1125 4.3003 -0.1234 10 8 6.7332 4.8050 0.7884 11 7 5.8720 5.0052 -1.2465 12 6 6.4085 6.2907 -1.3950 13 6 6.7143 7.0500 -0.2752 14 6 7.2493 8.3155 -0.4229 15 6 7.4767 8.8322 -1.6882 16 9 8.0004 10.0698 -1.8266 17 6 7.1697 8.0833 -2.8102 18 6 6.6323 6.8119 -2.6692 19 8 6.3297 6.0752 -3.7688 20 6 6.4655 6.6789 -4.9664 21 1 6.7177 7.7278 -5.0168 22 6 6.2816 5.9532 -6.1333 23 7 6.4136 6.5426 -7.3021 24 14 5.8448 4.1391 -6.0460 25 1 4.3680 3.9867 -6.0124 26 1 6.3875 3.4414 -7.2393 27 1 6.4316 3.5473 -4.8170 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9330 0.9286 -0.8907 36 1 3.9337 0.9284 0.8892 37 1 3.7171 3.3983 0.8904 38 1 3.7165 3.3992 -0.8896 39 1 5.8012 2.7890 2.0138 40 1 5.3275 4.6226 -1.9521 41 1 6.5383 6.6502 0.7126 42 1 7.4912 8.9033 0.4503 43 1 7.3475 8.4884 -3.7954 44 1 6.2846 6.0350 -8.1186 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827090095.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:53 Heat of formation + Delta-G solvation = -171.870068 kcal Electronic energy + Delta-G solvation = -27422.784712 eV Core-core repulsion = 23254.039738 eV Total energy + Delta-G solvation = -4168.744974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.88525 -41.93857 -40.60825 -38.59438 -37.78003 -36.54694 -35.75156 -34.49349 -33.27385 -31.32663 -30.69166 -28.99607 -27.36161 -25.88708 -24.13002 -23.25244 -22.54701 -21.92154 -21.47523 -20.20421 -19.79402 -18.93379 -18.43417 -17.32901 -17.20198 -17.05071 -16.74424 -16.59325 -16.27178 -15.89968 -15.77898 -15.48304 -15.37943 -15.25609 -15.01022 -14.38444 -14.31204 -14.28907 -14.02577 -13.88154 -13.65818 -13.17132 -13.06007 -12.77290 -12.65236 -12.56396 -12.34135 -12.19340 -12.01475 -11.73334 -11.72071 -11.69595 -11.54099 -11.33769 -11.30589 -10.94371 -10.43466 -9.66659 -8.85932 -8.53049 -6.27918 0.08126 0.36026 1.33960 1.38490 1.41185 1.51916 1.92292 2.25808 2.58976 2.74433 2.98016 3.20966 3.34471 3.52201 3.77200 3.88417 3.95544 4.04828 4.11769 4.17957 4.24918 4.33407 4.46274 4.50882 4.59497 4.77547 4.80090 4.85288 4.94786 5.03348 5.07328 5.09537 5.14224 5.18608 5.26629 5.27125 5.38666 5.39179 5.49759 5.55508 5.56737 5.79145 6.03540 6.30605 6.62963 6.78312 6.97256 7.39468 8.57840 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009048 B = 0.003916 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.746977 B = 7147.917432 C = 9483.473214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.111 4.111 5 C -0.143 4.143 6 C 0.106 3.894 7 H 0.135 0.865 8 O -0.544 6.544 9 C 0.482 3.518 10 O -0.549 6.549 11 N -0.646 5.646 12 C 0.070 3.930 13 C -0.065 4.065 14 C -0.194 4.194 15 C 0.116 3.884 16 F -0.147 7.147 17 C -0.257 4.257 18 C 0.138 3.862 19 O -0.219 6.219 20 C -0.403 4.403 21 H 0.078 0.922 22 C 0.014 3.986 23 N -0.919 5.919 24 Si 0.968 3.032 25 H -0.255 1.255 26 H -0.276 1.276 27 H -0.249 1.249 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.392 0.608 40 H 0.420 0.580 41 H 0.171 0.829 42 H 0.160 0.840 43 H 0.126 0.874 44 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.131 -11.468 15.965 21.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.148 4.148 5 C -0.181 4.181 6 C 0.044 3.956 7 H 0.152 0.848 8 O -0.350 6.350 9 C 0.271 3.729 10 O -0.427 6.427 11 N -0.291 5.291 12 C -0.025 4.025 13 C -0.085 4.085 14 C -0.214 4.214 15 C 0.096 3.904 16 F -0.125 7.125 17 C -0.278 4.278 18 C 0.086 3.914 19 O -0.125 6.125 20 C -0.478 4.478 21 H 0.096 0.904 22 C -0.186 4.186 23 N -0.558 5.558 24 Si 0.789 3.211 25 H -0.179 1.179 26 H -0.201 1.201 27 H -0.173 1.173 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.243 0.757 40 H 0.258 0.742 41 H 0.188 0.812 42 H 0.177 0.823 43 H 0.144 0.856 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.499 -11.814 15.958 21.598 hybrid contribution -0.151 0.698 -1.000 1.229 sum -8.650 -11.116 14.959 20.546 Atomic orbital electron populations 1.21793 0.95790 1.01808 1.01808 1.21532 0.95975 0.96741 1.02092 1.21620 0.94889 0.97055 1.02214 1.21500 0.95476 0.94781 1.03059 1.22275 0.91668 0.99676 1.04500 1.21901 0.95397 0.87853 0.90490 0.84750 1.86578 1.77782 1.55040 1.15580 1.22426 0.79177 0.89929 0.81357 1.90582 1.41292 1.71111 1.39754 1.43322 1.50769 1.13904 1.21106 1.17169 1.07431 0.87746 0.90171 1.21302 0.96758 0.91773 0.98653 1.21008 1.07303 0.97604 0.95442 1.17557 0.98297 0.80250 0.94248 1.91432 1.84354 1.39866 1.96883 1.20984 1.10822 0.96708 0.99237 1.18781 0.95150 0.90867 0.86618 1.83451 1.77408 1.39111 1.12550 1.20627 1.50613 0.96071 0.80530 0.90409 1.25343 0.95580 1.04854 0.92774 1.69740 1.48213 1.39670 0.98190 0.85254 0.79809 0.77071 0.78982 1.17938 1.20117 1.17257 0.92602 0.92982 0.92469 0.92187 0.91800 0.91708 0.92163 0.91574 0.90994 0.89959 0.89873 0.75730 0.74242 0.81156 0.82253 0.85586 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.09 16 2 C -0.13 -1.54 5.93 30.59 0.18 -1.36 16 3 C -0.12 -1.51 5.21 30.59 0.16 -1.35 16 4 C -0.11 -1.45 5.11 30.59 0.16 -1.30 16 5 C -0.14 -2.07 4.86 30.59 0.15 -1.92 16 6 C 0.11 2.04 3.38 29.85 0.10 2.14 16 7 H 0.14 2.42 8.14 -2.38 -0.02 2.40 16 8 O -0.54 -10.83 12.53 -129.99 -1.63 -12.46 16 9 C 0.48 12.87 7.06 87.66 0.62 13.49 16 10 O -0.55 -17.38 13.25 15.91 0.21 -17.17 16 11 N -0.65 -19.26 5.20 -303.04 -1.58 -20.84 16 12 C 0.07 2.56 6.48 38.23 0.25 2.80 16 13 C -0.06 -2.16 8.79 22.37 0.20 -1.96 16 14 C -0.19 -6.34 10.02 22.33 0.22 -6.11 16 15 C 0.12 4.45 7.29 22.37 0.16 4.61 16 16 F -0.15 -5.48 17.26 44.97 0.78 -4.70 16 17 C -0.26 -11.26 9.11 22.42 0.20 -11.06 16 18 C 0.14 5.99 6.66 22.69 0.15 6.14 16 19 O -0.22 -10.45 8.01 -22.76 -0.18 -10.63 16 20 C -0.40 -21.93 9.90 67.92 0.67 -21.26 16 21 H 0.08 4.57 5.52 -2.91 -0.02 4.56 16 22 C 0.01 0.75 5.49 84.83 0.47 1.22 16 23 N -0.92 -52.20 13.96 21.61 0.30 -51.90 16 24 Si 0.97 40.25 28.62 68.60 1.96 42.22 16 25 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 26 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 27 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 28 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.96 7.82 -2.38 -0.02 0.94 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.19 7.67 -2.38 -0.02 1.17 16 39 H 0.39 5.88 8.79 -74.06 -0.65 5.23 16 40 H 0.42 11.37 7.94 -92.71 -0.74 10.64 16 41 H 0.17 5.30 5.52 -2.91 -0.02 5.29 16 42 H 0.16 4.15 8.06 -2.91 -0.02 4.13 16 43 H 0.13 6.08 5.71 -2.91 -0.02 6.06 16 44 H 0.29 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -63.86 372.12 3.93 -59.93 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: -0.34 Total: 32.54 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: 4.40 Total: -17.01 kcal Atomic # 7 Polarization: -71.46 SS G_CDS: -1.28 Total: -72.73 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -1.60 Total: -40.25 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.78 Total: -4.70 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 1.96 Total: 42.22 kcal Total: -63.86 3.93 -59.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827090095.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.936 kcal (2) G-P(sol) polarization free energy of solvation -63.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds