Wall clock time and date at job start Tue Mar 31 2020 14:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.47034 * 2 1 4 4 C 1.52996 * 109.46851 * 304.64134 * 3 2 1 5 5 C 1.53006 * 109.47212 * 295.91293 * 4 3 2 6 6 C 1.52999 * 109.47291 * 64.64277 * 3 2 1 7 7 N 1.46901 * 109.47075 * 62.42561 * 6 3 2 8 8 C 1.46896 * 110.99891 * 69.87798 * 7 6 3 9 9 C 1.50696 * 109.47479 * 60.45175 * 8 7 6 10 10 H 1.07998 * 119.99858 * 3.55232 * 9 8 7 11 11 C 1.37878 * 120.00404 * 183.55032 * 9 8 7 12 12 N 1.31517 * 119.99730 * 359.97438 * 11 9 8 13 13 Si 1.86791 * 120.00280 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47379 * 59.99734 * 13 11 9 15 15 H 1.48501 * 109.47523 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47269 * 299.99860 * 13 11 9 17 17 C 1.46906 * 110.99729 * 193.82638 * 7 6 3 18 18 C 1.50701 * 109.46845 * 170.80642 * 17 7 6 19 19 C 1.37416 * 123.35606 * 101.49624 * 18 17 7 20 20 C 1.33851 * 115.11122 * 180.27200 * 19 18 17 21 21 S 1.70620 * 110.96489 * 359.76732 * 20 19 18 22 22 C 1.36748 * 123.35596 * 281.32831 * 18 17 7 23 23 C 1.46391 * 125.46554 * 0.02562 * 22 18 17 24 24 O 1.21627 * 119.99867 * 354.77535 * 23 22 18 25 25 O 1.34894 * 120.00148 * 175.04878 * 23 22 18 26 26 H 1.08996 * 109.46624 * 185.95504 * 1 2 3 27 27 H 1.08997 * 109.47119 * 305.96082 * 1 2 3 28 28 H 1.09005 * 109.46531 * 65.96381 * 1 2 3 29 29 H 1.09000 * 109.47669 * 239.99581 * 2 1 3 30 30 H 1.09004 * 109.46934 * 119.99099 * 2 1 3 31 31 H 1.08997 * 109.46673 * 184.64226 * 3 2 1 32 32 H 1.09008 * 109.47491 * 55.91005 * 4 3 2 33 33 H 1.08999 * 109.47319 * 175.91259 * 4 3 2 34 34 H 1.09000 * 109.46460 * 305.72457 * 5 4 3 35 35 H 1.08991 * 109.47518 * 65.72402 * 5 4 3 36 36 H 1.08997 * 109.47057 * 185.73173 * 5 4 3 37 37 H 1.09003 * 109.47204 * 302.42667 * 6 3 2 38 38 H 1.08992 * 109.46933 * 182.43060 * 6 3 2 39 39 H 1.09002 * 109.47336 * 180.45579 * 8 7 6 40 40 H 1.09008 * 109.46734 * 300.45390 * 8 7 6 41 41 H 0.97000 * 119.99665 * 180.02562 * 12 11 9 42 42 H 1.09003 * 109.46860 * 50.81175 * 17 7 6 43 43 H 1.08997 * 109.47090 * 290.81066 * 17 7 6 44 44 H 1.08003 * 122.43936 * 0.03548 * 19 18 17 45 45 H 1.08002 * 124.51818 * 179.79446 * 20 19 18 46 46 H 0.96705 * 117.00418 * 179.72244 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4369 2.1966 -1.1868 5 6 1.9316 1.5717 -2.4928 6 6 1.6276 2.1294 1.3035 7 7 2.2538 1.4400 2.4396 8 6 3.7044 1.6708 2.4608 9 6 3.9763 3.1471 2.5936 10 1 3.1555 3.8387 2.7138 11 6 5.2729 3.6149 2.5619 12 7 6.2724 2.7727 2.4161 13 14 5.6100 5.4447 2.7273 14 1 5.0857 5.9289 4.0295 15 1 7.0738 5.6863 2.6629 16 1 4.9384 6.1737 1.6215 17 6 1.6371 1.8493 3.7085 18 6 2.1417 0.9657 4.8202 19 6 3.1150 1.3523 5.7098 20 6 3.4422 0.4348 6.6279 21 16 2.5229 -0.9880 6.4237 22 6 1.6742 -0.2993 5.0462 23 6 0.6380 -0.9745 4.2630 24 8 0.0515 -0.3728 3.3836 25 8 0.3296 -2.2622 4.5204 26 1 -0.3632 -1.0221 0.1066 27 1 -0.3633 0.6035 0.8318 28 1 -0.3632 0.4186 -0.9386 29 1 1.8935 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 3.1268 1.4436 -0.0832 32 1 0.3496 2.1335 -1.1428 33 1 1.7421 3.2422 -1.1459 34 1 3.0212 1.5426 -2.4917 35 1 1.5412 0.5579 -2.5813 36 1 1.5850 2.1694 -3.3358 37 1 0.5433 2.0901 1.4076 38 1 1.9534 3.1693 1.2850 39 1 4.1440 1.1428 3.3069 40 1 4.1445 1.3023 1.5340 41 1 7.1846 3.1018 2.3941 42 1 0.5537 1.7551 3.6329 43 1 1.8977 2.8860 3.9215 44 1 3.5846 2.3240 5.6687 45 1 4.1882 0.5765 7.3960 46 1 -0.3642 -2.6641 3.9797 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828859223.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:07 Heat of formation + Delta-G solvation = -68.932777 kcal Electronic energy + Delta-G solvation = -27170.302624 eV Core-core repulsion = 23572.234522 eV Total energy + Delta-G solvation = -3598.068102 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.83259 -38.37155 -37.28711 -35.60846 -34.87811 -32.37298 -30.62476 -30.03265 -28.11811 -27.30254 -25.55019 -23.76833 -23.21176 -22.66825 -22.09410 -20.12205 -18.50252 -18.25691 -18.03115 -16.96658 -16.21179 -15.45369 -15.34195 -15.15831 -14.73386 -14.52193 -14.41348 -14.30570 -13.54263 -13.06356 -12.87526 -12.82218 -12.42478 -12.34063 -12.19163 -12.09379 -11.79602 -11.50167 -11.35144 -11.22891 -11.00036 -10.97357 -10.85951 -10.79461 -10.62957 -10.54698 -10.11911 -10.07004 -9.99761 -9.72850 -9.69200 -9.58451 -9.36738 -8.52805 -8.39199 -8.08349 -7.02054 -5.99817 -4.08818 0.76211 1.81174 2.21915 2.67508 3.26344 3.26618 3.32642 3.34839 3.41131 4.40344 5.05811 5.27869 5.30227 5.44407 5.52084 5.56258 5.59624 5.72403 5.76812 5.83995 5.87267 5.94695 6.11905 6.23829 6.26740 6.28817 6.37498 6.41160 6.44458 6.47586 6.54138 6.59214 6.63439 6.67760 6.79601 6.88752 6.92425 7.02054 7.13046 7.19109 7.36887 7.58695 7.94594 8.16151 8.21920 8.34807 8.39080 9.02449 9.56923 11.03917 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008512 B = 0.006614 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3288.808299 B = 4232.273508 C = 6946.320142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 C -0.078 4.078 4 C -0.119 4.119 5 C -0.148 4.148 6 C 0.071 3.929 7 N -0.521 5.521 8 C 0.184 3.816 9 C -0.543 4.543 10 H 0.055 0.945 11 C 0.068 3.932 12 N -0.889 5.889 13 Si 0.882 3.118 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.278 1.278 17 C 0.109 3.891 18 C 0.028 3.972 19 C -0.127 4.127 20 C -0.229 4.229 21 S 0.190 5.810 22 C -0.257 4.257 23 C 0.556 3.444 24 O -0.481 6.481 25 O -0.524 6.524 26 H 0.037 0.963 27 H 0.063 0.937 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.053 0.947 38 H 0.041 0.959 39 H 0.028 0.972 40 H 0.034 0.966 41 H 0.261 0.739 42 H 0.079 0.921 43 H 0.050 0.950 44 H 0.152 0.848 45 H 0.165 0.835 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.129 -7.330 3.311 12.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.141 4.141 3 C -0.097 4.097 4 C -0.157 4.157 5 C -0.205 4.205 6 C -0.057 4.057 7 N -0.244 5.244 8 C 0.058 3.942 9 C -0.582 4.582 10 H 0.073 0.927 11 C -0.135 4.135 12 N -0.527 5.527 13 Si 0.710 3.290 14 H -0.204 1.204 15 H -0.213 1.213 16 H -0.204 1.204 17 C -0.021 4.021 18 C 0.012 3.988 19 C -0.158 4.158 20 C -0.366 4.366 21 S 0.459 5.541 22 C -0.375 4.375 23 C 0.398 3.602 24 O -0.368 6.368 25 O -0.336 6.336 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.046 0.954 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.068 0.932 44 H 0.170 0.830 45 H 0.183 0.817 46 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -9.894 -8.912 4.028 13.912 hybrid contribution 0.488 3.141 -0.849 3.290 sum -9.406 -5.771 3.179 11.484 Atomic orbital electron populations 1.21760 0.96894 1.00401 1.00869 1.21344 0.95127 0.96708 1.00964 1.21087 1.00729 0.94541 0.93294 1.21571 1.00155 0.99441 0.94576 1.21759 1.01286 1.00400 0.97066 1.21925 0.97036 0.96435 0.90333 1.62450 1.06379 1.55909 0.99637 1.19810 0.82006 0.94562 0.97805 1.21668 0.92080 0.93924 1.50574 0.92688 1.24904 0.96368 0.97042 0.95165 1.69938 0.99044 1.33998 1.49750 0.86822 0.77127 0.86421 0.78612 1.20394 1.21347 1.20350 1.20737 0.98345 0.94977 0.88060 1.19542 0.92325 0.91946 0.95008 1.20087 0.98520 1.02415 0.94776 1.25312 1.06536 0.99108 1.05672 1.82860 1.30687 1.15085 1.25509 1.23100 1.08444 0.99612 1.06349 1.19251 0.80837 0.79211 0.80862 1.90936 1.50419 1.65568 1.29911 1.84596 1.58140 1.27807 1.63085 0.94422 0.91836 0.94064 0.93998 0.90971 0.90713 0.92304 0.92518 0.92829 0.92936 0.93733 0.92835 0.94038 0.95430 0.94845 0.92911 0.90296 0.93198 0.83040 0.81707 0.73268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.11 37.16 0.34 -1.81 16 2 C -0.10 -1.75 5.26 -26.73 -0.14 -1.89 16 3 C -0.08 -1.40 2.13 -90.62 -0.19 -1.60 16 4 C -0.12 -1.86 5.07 -26.73 -0.14 -1.99 16 5 C -0.15 -2.06 9.50 37.16 0.35 -1.71 16 6 C 0.07 1.38 4.01 -3.82 -0.02 1.37 16 7 N -0.52 -10.81 3.83 -237.51 -0.91 -11.72 16 8 C 0.18 4.52 4.75 -4.98 -0.02 4.50 16 9 C -0.54 -14.13 7.37 -34.44 -0.25 -14.38 16 10 H 0.06 1.43 5.93 -52.49 -0.31 1.12 16 11 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 12 N -0.89 -25.37 13.29 55.43 0.74 -24.63 16 13 Si 0.88 20.90 29.54 -169.99 -5.02 15.88 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 C 0.11 2.12 4.18 -4.97 -0.02 2.09 16 18 C 0.03 0.51 4.47 -105.46 -0.47 0.04 16 19 C -0.13 -2.21 9.16 -41.42 -0.38 -2.59 16 20 C -0.23 -3.34 10.92 29.19 0.32 -3.02 16 21 S 0.19 2.62 22.93 -107.50 -2.46 0.15 16 22 C -0.26 -4.27 6.45 -36.84 -0.24 -4.51 16 23 C 0.56 8.82 8.29 34.01 0.28 9.10 16 24 O -0.48 -8.44 15.17 -19.36 -0.29 -8.73 16 25 O -0.52 -6.44 13.29 -41.02 -0.55 -6.98 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 1.05 6.24 -51.93 -0.32 0.72 16 28 H 0.04 0.57 6.62 -51.93 -0.34 0.22 16 29 H 0.04 0.66 6.91 -51.93 -0.36 0.30 16 30 H 0.07 1.39 7.54 -51.93 -0.39 1.00 16 31 H 0.07 1.58 6.58 -51.93 -0.34 1.24 16 32 H 0.06 0.85 6.25 -51.92 -0.32 0.53 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.69 6.94 -51.93 -0.36 0.33 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.99 6.05 -51.93 -0.31 0.68 16 38 H 0.04 0.90 6.31 -51.93 -0.33 0.57 16 39 H 0.03 0.74 6.56 -51.93 -0.34 0.40 16 40 H 0.03 0.91 6.55 -51.92 -0.34 0.57 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.08 1.50 6.38 -51.93 -0.33 1.17 16 43 H 0.05 1.03 6.43 -51.93 -0.33 0.70 16 44 H 0.15 2.79 8.06 -52.48 -0.42 2.36 16 45 H 0.17 1.96 8.06 -52.49 -0.42 1.54 16 46 H 0.41 3.09 9.11 45.56 0.42 3.50 16 LS Contribution 372.88 15.07 5.62 5.62 Total: -1.00 -29.39 372.88 -9.55 -38.94 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.00 Total: 6.14 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -0.68 Total: -14.66 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: -0.17 Total: -36.36 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.84 Total: -15.72 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -2.46 Total: 0.15 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.39 -9.55 -38.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828859223.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.988 kcal (2) G-P(sol) polarization free energy of solvation -29.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds