Wall clock time and date at job start Tue Mar 31 2020 14:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.47034 * 2 1 4 4 C 1.52996 * 109.46851 * 304.64134 * 3 2 1 5 5 C 1.53006 * 109.47212 * 295.91293 * 4 3 2 6 6 C 1.52999 * 109.47291 * 64.64277 * 3 2 1 7 7 N 1.46901 * 109.47075 * 62.42561 * 6 3 2 8 8 C 1.46896 * 110.99891 * 69.87798 * 7 6 3 9 9 C 1.50696 * 109.47479 * 60.45175 * 8 7 6 10 10 H 1.07998 * 119.99858 * 3.55232 * 9 8 7 11 11 C 1.37878 * 120.00404 * 183.55032 * 9 8 7 12 12 N 1.31517 * 119.99730 * 359.97438 * 11 9 8 13 13 Si 1.86791 * 120.00280 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47379 * 59.99734 * 13 11 9 15 15 H 1.48501 * 109.47523 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47269 * 299.99860 * 13 11 9 17 17 C 1.46906 * 110.99729 * 193.82638 * 7 6 3 18 18 C 1.50701 * 109.46845 * 170.80642 * 17 7 6 19 19 C 1.37416 * 123.35606 * 101.49624 * 18 17 7 20 20 C 1.33851 * 115.11122 * 180.27200 * 19 18 17 21 21 S 1.70620 * 110.96489 * 359.76732 * 20 19 18 22 22 C 1.36748 * 123.35596 * 281.32831 * 18 17 7 23 23 C 1.46391 * 125.46554 * 0.02562 * 22 18 17 24 24 O 1.21627 * 119.99867 * 354.77535 * 23 22 18 25 25 O 1.34894 * 120.00148 * 175.04878 * 23 22 18 26 26 H 1.08996 * 109.46624 * 185.95504 * 1 2 3 27 27 H 1.08997 * 109.47119 * 305.96082 * 1 2 3 28 28 H 1.09005 * 109.46531 * 65.96381 * 1 2 3 29 29 H 1.09000 * 109.47669 * 239.99581 * 2 1 3 30 30 H 1.09004 * 109.46934 * 119.99099 * 2 1 3 31 31 H 1.08997 * 109.46673 * 184.64226 * 3 2 1 32 32 H 1.09008 * 109.47491 * 55.91005 * 4 3 2 33 33 H 1.08999 * 109.47319 * 175.91259 * 4 3 2 34 34 H 1.09000 * 109.46460 * 305.72457 * 5 4 3 35 35 H 1.08991 * 109.47518 * 65.72402 * 5 4 3 36 36 H 1.08997 * 109.47057 * 185.73173 * 5 4 3 37 37 H 1.09003 * 109.47204 * 302.42667 * 6 3 2 38 38 H 1.08992 * 109.46933 * 182.43060 * 6 3 2 39 39 H 1.09002 * 109.47336 * 180.45579 * 8 7 6 40 40 H 1.09008 * 109.46734 * 300.45390 * 8 7 6 41 41 H 0.97000 * 119.99665 * 180.02562 * 12 11 9 42 42 H 1.09003 * 109.46860 * 50.81175 * 17 7 6 43 43 H 1.08997 * 109.47090 * 290.81066 * 17 7 6 44 44 H 1.08003 * 122.43936 * 0.03548 * 19 18 17 45 45 H 1.08002 * 124.51818 * 179.79446 * 20 19 18 46 46 H 0.96705 * 117.00418 * 179.72244 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4369 2.1966 -1.1868 5 6 1.9316 1.5717 -2.4928 6 6 1.6276 2.1294 1.3035 7 7 2.2538 1.4400 2.4396 8 6 3.7044 1.6708 2.4608 9 6 3.9763 3.1471 2.5936 10 1 3.1555 3.8387 2.7138 11 6 5.2729 3.6149 2.5619 12 7 6.2724 2.7727 2.4161 13 14 5.6100 5.4447 2.7273 14 1 5.0857 5.9289 4.0295 15 1 7.0738 5.6863 2.6629 16 1 4.9384 6.1737 1.6215 17 6 1.6371 1.8493 3.7085 18 6 2.1417 0.9657 4.8202 19 6 3.1150 1.3523 5.7098 20 6 3.4422 0.4348 6.6279 21 16 2.5229 -0.9880 6.4237 22 6 1.6742 -0.2993 5.0462 23 6 0.6380 -0.9745 4.2630 24 8 0.0515 -0.3728 3.3836 25 8 0.3296 -2.2622 4.5204 26 1 -0.3632 -1.0221 0.1066 27 1 -0.3633 0.6035 0.8318 28 1 -0.3632 0.4186 -0.9386 29 1 1.8935 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 3.1268 1.4436 -0.0832 32 1 0.3496 2.1335 -1.1428 33 1 1.7421 3.2422 -1.1459 34 1 3.0212 1.5426 -2.4917 35 1 1.5412 0.5579 -2.5813 36 1 1.5850 2.1694 -3.3358 37 1 0.5433 2.0901 1.4076 38 1 1.9534 3.1693 1.2850 39 1 4.1440 1.1428 3.3069 40 1 4.1445 1.3023 1.5340 41 1 7.1846 3.1018 2.3941 42 1 0.5537 1.7551 3.6329 43 1 1.8977 2.8860 3.9215 44 1 3.5846 2.3240 5.6687 45 1 4.1882 0.5765 7.3960 46 1 -0.3642 -2.6641 3.9797 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828859223.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:06 Heat of formation + Delta-G solvation = -85.991183 kcal Electronic energy + Delta-G solvation = -27171.042332 eV Core-core repulsion = 23572.234522 eV Total energy + Delta-G solvation = -3598.807810 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.07070 -39.82343 -38.63904 -36.75847 -36.46978 -34.40307 -31.88055 -31.36907 -29.55025 -29.17019 -27.05978 -25.53696 -24.60688 -24.02868 -23.32718 -21.76512 -19.79611 -19.67175 -19.37566 -18.49429 -17.86649 -16.97574 -16.75805 -16.45484 -16.37711 -16.05014 -15.85014 -15.67465 -15.11190 -14.61824 -14.24042 -14.08071 -13.99970 -13.63186 -13.57856 -13.49751 -13.22922 -13.08942 -12.78934 -12.74458 -12.63373 -12.47658 -12.35224 -12.24738 -12.05885 -12.02713 -11.89112 -11.73918 -11.58086 -11.28125 -11.13103 -11.02612 -10.97218 -10.52334 -9.78323 -9.29887 -8.83635 -8.07048 -6.25873 -0.50320 0.61306 0.98753 1.36039 1.37143 1.38723 1.44324 2.03368 2.26038 2.39021 3.16011 3.51584 4.03672 4.07725 4.15159 4.19980 4.27230 4.36598 4.48997 4.58169 4.64022 4.67457 4.70449 4.82603 4.85949 4.94321 5.00331 5.02123 5.09771 5.12476 5.17762 5.25674 5.29877 5.32561 5.41299 5.42820 5.47516 5.54214 5.59398 5.69343 5.72515 5.81250 5.84292 6.15994 6.38591 6.64411 6.95996 7.14361 7.43830 8.92857 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008512 B = 0.006614 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3288.808299 B = 4232.273508 C = 6946.320142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.095 4.095 3 C -0.073 4.073 4 C -0.115 4.115 5 C -0.144 4.144 6 C 0.075 3.925 7 N -0.514 5.514 8 C 0.209 3.791 9 C -0.542 4.542 10 H 0.052 0.948 11 C 0.020 3.980 12 N -0.923 5.923 13 Si 0.944 3.056 14 H -0.270 1.270 15 H -0.285 1.285 16 H -0.275 1.275 17 C 0.116 3.884 18 C 0.000 4.000 19 C -0.158 4.158 20 C -0.222 4.222 21 S 0.274 5.726 22 C -0.280 4.280 23 C 0.557 3.443 24 O -0.504 6.504 25 O -0.512 6.512 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.043 0.957 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.038 0.962 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.016 0.984 39 H 0.005 0.995 40 H 0.000 1.000 41 H 0.262 0.738 42 H 0.084 0.916 43 H 0.030 0.970 44 H 0.130 0.870 45 H 0.194 0.806 46 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.474 -8.340 3.692 14.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.133 4.133 3 C -0.092 4.092 4 C -0.153 4.153 5 C -0.201 4.201 6 C -0.053 4.053 7 N -0.237 5.237 8 C 0.082 3.918 9 C -0.581 4.581 10 H 0.070 0.930 11 C -0.180 4.180 12 N -0.563 5.563 13 Si 0.770 3.230 14 H -0.195 1.195 15 H -0.210 1.210 16 H -0.201 1.201 17 C -0.013 4.013 18 C -0.016 4.016 19 C -0.189 4.189 20 C -0.360 4.360 21 S 0.543 5.457 22 C -0.399 4.399 23 C 0.401 3.599 24 O -0.394 6.394 25 O -0.327 6.327 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.034 0.966 39 H 0.023 0.977 40 H 0.018 0.982 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.048 0.952 44 H 0.148 0.852 45 H 0.211 0.789 46 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -11.271 -9.943 4.415 15.665 hybrid contribution 0.866 3.307 -0.885 3.531 sum -10.405 -6.636 3.530 12.836 Atomic orbital electron populations 1.21652 0.94938 1.01028 1.01225 1.21229 0.96635 0.95233 1.00180 1.21016 0.98473 0.96018 0.93740 1.21536 1.01026 0.98488 0.94217 1.21725 1.00378 1.01309 0.96674 1.21945 0.97590 0.94988 0.90760 1.62394 1.04338 1.56038 1.00907 1.19335 0.84181 0.93407 0.94889 1.21844 0.92048 0.94598 1.49602 0.92985 1.25627 0.96230 1.01134 0.94994 1.70061 0.99330 1.35867 1.51034 0.85833 0.76935 0.81438 0.78825 1.19468 1.21044 1.20075 1.20629 0.98423 0.94370 0.87925 1.19423 0.93869 0.92936 0.95349 1.19944 0.99715 1.02607 0.96589 1.25697 1.06344 0.98962 1.04969 1.82520 1.28029 1.12791 1.22336 1.23385 1.09022 0.99589 1.07884 1.19183 0.80405 0.80020 0.80338 1.90915 1.51233 1.66401 1.30852 1.84529 1.58938 1.25912 1.63319 0.93283 0.93320 0.92112 0.92758 0.93768 0.94661 0.90466 0.93596 0.94299 0.91801 0.91610 0.91363 0.96572 0.97680 0.98169 0.92944 0.89805 0.95231 0.85233 0.78852 0.70667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.74 9.11 71.98 0.66 -3.08 16 2 C -0.10 -3.19 5.26 30.60 0.16 -3.03 16 3 C -0.07 -2.74 2.13 -10.79 -0.02 -2.76 16 4 C -0.11 -3.51 5.07 30.59 0.16 -3.35 16 5 C -0.14 -3.80 9.50 71.98 0.68 -3.12 16 6 C 0.08 3.05 4.01 86.30 0.35 3.40 16 7 N -0.51 -22.45 3.83 -905.36 -3.47 -25.91 16 8 C 0.21 10.89 4.75 85.56 0.41 11.30 16 9 C -0.54 -29.51 7.37 25.60 0.19 -29.32 16 10 H 0.05 2.82 5.93 -2.91 -0.02 2.81 16 11 C 0.02 1.09 5.46 84.65 0.46 1.55 16 12 N -0.92 -54.50 13.29 21.45 0.28 -54.22 16 13 Si 0.94 43.85 29.54 68.60 2.03 45.88 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 15 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 C 0.12 4.74 4.18 85.56 0.36 5.09 16 18 C 0.00 0.02 4.47 -20.41 -0.09 -0.07 16 19 C -0.16 -5.63 9.16 21.08 0.19 -5.44 16 20 C -0.22 -6.20 10.92 66.82 0.73 -5.47 16 21 S 0.27 6.90 22.93 -56.49 -1.30 5.60 16 22 C -0.28 -9.16 6.45 24.04 0.16 -9.01 16 23 C 0.56 17.10 8.29 69.94 0.58 17.68 16 24 O -0.50 -17.48 15.17 19.42 0.29 -17.18 16 25 O -0.51 -11.35 13.29 -58.08 -0.77 -12.12 16 26 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 27 H 0.05 1.54 6.24 -2.39 -0.01 1.52 16 28 H 0.06 1.49 6.62 -2.38 -0.02 1.48 16 29 H 0.05 1.67 6.91 -2.39 -0.02 1.65 16 30 H 0.04 1.72 7.54 -2.39 -0.02 1.71 16 31 H 0.03 1.58 6.58 -2.39 -0.02 1.57 16 32 H 0.08 2.08 6.25 -2.38 -0.01 2.07 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.06 1.54 6.94 -2.39 -0.02 1.52 16 36 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 2.57 6.05 -2.39 -0.01 2.55 16 38 H 0.02 0.73 6.31 -2.39 -0.02 0.71 16 39 H 0.01 0.29 6.56 -2.39 -0.02 0.27 16 40 H 0.00 0.01 6.55 -2.38 -0.02 0.00 16 41 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 42 H 0.08 3.29 6.38 -2.39 -0.02 3.27 16 43 H 0.03 1.30 6.43 -2.39 -0.02 1.28 16 44 H 0.13 5.09 8.06 -2.91 -0.02 5.07 16 45 H 0.19 4.14 8.06 -2.91 -0.02 4.12 16 46 H 0.43 5.32 9.11 -74.05 -0.67 4.64 16 Total: -1.00 -66.07 372.88 2.36 -63.71 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.33 Total: 19.88 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 4.96 Total: -25.63 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -3.18 Total: -80.13 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.48 Total: -29.30 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 6.90 SS G_CDS: -1.30 Total: 5.60 kcal Total: -66.07 2.36 -63.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828859223.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.281 kcal (2) G-P(sol) polarization free energy of solvation -66.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds