Wall clock time and date at job start Tue Mar 31 2020 14:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47049 * 2 1 4 4 C 1.52998 * 109.46564 * 65.00451 * 3 2 1 5 5 C 1.53009 * 109.46653 * 186.93724 * 4 3 2 6 6 C 1.53000 * 109.46920 * 185.00352 * 3 2 1 7 7 N 1.46892 * 109.47209 * 64.25993 * 6 3 2 8 8 C 1.46907 * 111.00298 * 70.92288 * 7 6 3 9 9 C 1.50695 * 109.46770 * 61.86897 * 8 7 6 10 10 H 1.08001 * 120.00116 * 4.41134 * 9 8 7 11 11 C 1.37879 * 119.99941 * 184.41249 * 9 8 7 12 12 N 1.31517 * 120.00238 * 184.95794 * 11 9 8 13 13 Si 1.86801 * 120.00069 * 4.95716 * 11 9 8 14 14 H 1.48495 * 109.47009 * 94.59758 * 13 11 9 15 15 H 1.48497 * 109.47308 * 214.60133 * 13 11 9 16 16 H 1.48499 * 109.46877 * 334.60148 * 13 11 9 17 17 C 1.46900 * 111.00113 * 194.87663 * 7 6 3 18 18 C 1.50701 * 109.47107 * 169.90927 * 17 7 6 19 19 C 1.33859 * 124.51710 * 94.81684 * 18 17 7 20 20 C 1.37417 * 115.11159 * 179.78614 * 19 18 17 21 21 C 1.36746 * 113.28336 * 0.48805 * 20 19 18 22 22 C 1.46394 * 125.46299 * 179.75770 * 21 20 19 23 23 O 1.21635 * 119.99940 * 0.02562 * 22 21 20 24 24 O 1.34895 * 120.00615 * 180.02562 * 22 21 20 25 25 S 1.70616 * 124.52057 * 275.11293 * 18 17 7 26 26 H 1.09000 * 109.47199 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46738 * 299.99442 * 1 2 3 28 28 H 1.09000 * 109.47484 * 59.99795 * 1 2 3 29 29 H 1.09003 * 109.46738 * 240.00558 * 2 1 3 30 30 H 1.08996 * 109.47632 * 120.00696 * 2 1 3 31 31 H 1.08999 * 109.47160 * 305.00619 * 3 2 1 32 32 H 1.08997 * 109.47538 * 306.93436 * 4 3 2 33 33 H 1.09002 * 109.47391 * 66.93883 * 4 3 2 34 34 H 1.08998 * 109.47080 * 303.51612 * 5 4 3 35 35 H 1.08996 * 109.47307 * 63.52270 * 5 4 3 36 36 H 1.09008 * 109.47007 * 183.52545 * 5 4 3 37 37 H 1.09002 * 109.47173 * 304.25510 * 6 3 2 38 38 H 1.09001 * 109.46577 * 184.26015 * 6 3 2 39 39 H 1.08997 * 109.47287 * 181.86712 * 8 7 6 40 40 H 1.09000 * 109.46774 * 301.87274 * 8 7 6 41 41 H 0.96998 * 120.00067 * 179.97438 * 12 11 9 42 42 H 1.08999 * 109.47079 * 289.91302 * 17 7 6 43 43 H 1.09002 * 109.46775 * 49.90945 * 17 7 6 44 44 H 1.08005 * 122.44588 * 359.97438 * 19 18 17 45 45 H 1.07994 * 123.35443 * 180.27029 * 20 19 18 46 46 H 0.96696 * 117.00450 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1264 1.3074 5 6 1.9917 3.6127 1.2370 6 6 3.5648 1.4443 -0.1258 7 7 3.9495 0.8800 -1.4263 8 6 3.6102 1.7996 -2.5205 9 6 4.3748 3.0869 -2.3499 10 1 5.0985 3.1838 -1.5540 11 6 4.1505 4.1411 -3.2098 12 7 4.8853 5.2284 -3.1230 13 14 2.8030 4.0250 -4.4983 14 1 1.5594 4.6415 -3.9708 15 1 3.2292 4.7429 -5.7264 16 1 2.5494 2.5981 -4.8220 17 6 5.3780 0.5379 -1.4500 18 6 5.6833 -0.2581 -2.6926 19 6 6.1398 0.2665 -3.8364 20 6 6.3572 -0.6386 -4.8473 21 6 6.0528 -1.9246 -4.4961 22 6 6.1787 -3.0951 -5.3662 23 8 6.5838 -2.9651 -6.5057 24 8 5.8454 -4.3180 -4.9044 25 16 5.4866 -1.9472 -2.8316 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6053 1.9816 -0.8417 32 1 0.5612 2.0170 1.4574 33 1 2.1672 1.6642 2.1391 34 1 3.0553 3.7217 1.0249 35 1 1.4127 4.0881 0.4453 36 1 1.7611 4.0872 2.1909 37 1 3.9961 0.8418 0.6737 38 1 3.9344 2.4670 -0.0498 39 1 3.8754 1.3432 -3.4741 40 1 2.5404 2.0073 -2.5019 41 1 4.7277 5.9699 -3.7282 42 1 5.9706 1.4527 -1.4496 43 1 5.6242 -0.0549 -0.5690 44 1 6.3266 1.3237 -3.9551 45 1 6.7280 -0.3613 -5.8229 46 1 5.9457 -5.0605 -5.5156 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828859249.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:01 Heat of formation + Delta-G solvation = -74.119968 kcal Electronic energy + Delta-G solvation = -26081.043542 eV Core-core repulsion = 22482.750506 eV Total energy + Delta-G solvation = -3598.293035 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.02529 -38.51709 -37.35891 -36.01564 -35.20141 -32.47891 -31.39304 -30.62946 -28.24142 -27.64841 -25.62850 -23.44340 -23.41452 -22.28076 -22.16591 -20.47623 -18.98889 -18.81755 -18.42336 -17.22331 -16.75260 -15.72327 -15.64413 -15.39001 -14.87168 -14.37542 -14.22059 -14.12835 -13.89214 -13.60319 -13.20817 -12.87327 -12.66380 -12.62178 -12.41975 -12.09806 -11.96955 -11.65741 -11.58906 -11.40564 -11.27428 -11.18452 -11.00596 -10.94619 -10.71961 -10.70146 -10.54908 -10.44078 -10.13175 -9.98064 -9.82786 -9.74556 -9.59286 -8.63026 -8.52519 -8.26441 -7.29884 -6.17798 -4.16573 0.58949 1.70634 2.20933 2.44916 3.03524 3.15957 3.22213 3.32124 3.36384 4.34296 4.76550 5.16268 5.18347 5.23426 5.27472 5.32842 5.41893 5.50826 5.59276 5.67032 5.72937 5.77809 5.87597 5.93776 6.09358 6.15349 6.21448 6.27542 6.30639 6.31956 6.34533 6.41249 6.42797 6.51642 6.60976 6.61674 6.69099 6.77406 6.87659 6.88963 6.93836 7.10626 7.49001 7.85054 7.91563 7.95973 8.35634 8.83535 9.46353 10.94553 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010506 B = 0.004601 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.446573 B = 6084.019240 C = 7666.712455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.080 4.080 4 C -0.116 4.116 5 C -0.153 4.153 6 C 0.062 3.938 7 N -0.527 5.527 8 C 0.151 3.849 9 C -0.547 4.547 10 H 0.075 0.925 11 C 0.078 3.922 12 N -0.895 5.895 13 Si 0.868 3.132 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.262 1.262 17 C 0.117 3.883 18 C -0.142 4.142 19 C -0.155 4.155 20 C -0.028 4.028 21 C -0.297 4.297 22 C 0.563 3.437 23 O -0.518 6.518 24 O -0.515 6.515 25 S 0.241 5.759 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.042 0.958 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.030 0.970 40 H 0.027 0.973 41 H 0.263 0.737 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.158 0.842 45 H 0.149 0.851 46 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.907 -13.752 4.735 14.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.099 4.099 4 C -0.153 4.153 5 C -0.211 4.211 6 C -0.066 4.066 7 N -0.251 5.251 8 C 0.024 3.976 9 C -0.585 4.585 10 H 0.093 0.907 11 C -0.125 4.125 12 N -0.533 5.533 13 Si 0.695 3.305 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.187 1.187 17 C -0.013 4.013 18 C -0.263 4.263 19 C -0.185 4.185 20 C -0.063 4.063 21 C -0.415 4.415 22 C 0.408 3.592 23 O -0.409 6.409 24 O -0.327 6.327 25 S 0.510 5.490 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.048 0.952 40 H 0.045 0.955 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.175 0.825 45 H 0.167 0.833 46 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -2.591 -14.791 5.573 16.017 hybrid contribution 0.267 1.758 -2.161 2.799 sum -2.324 -13.033 3.412 13.672 Atomic orbital electron populations 1.21848 0.97169 1.00617 1.01372 1.21469 0.94346 0.96956 1.02114 1.21143 0.95671 0.95585 0.97502 1.21569 1.00445 0.95821 0.97514 1.21817 1.02857 0.95859 1.00536 1.22072 0.94838 0.99488 0.90185 1.62502 1.13724 1.44413 1.04424 1.20265 0.96344 0.90653 0.90296 1.21544 1.23821 0.97153 1.16023 0.90732 1.24874 0.95589 0.95212 0.96792 1.69921 1.39101 1.05877 1.38413 0.86957 0.82846 0.78966 0.81716 1.20330 1.21300 1.18659 1.20558 0.92115 0.97629 0.90953 1.24484 1.01997 0.98729 1.01090 1.20204 1.04172 1.02368 0.91722 1.20781 0.95307 0.89737 1.00446 1.23292 1.22112 0.95241 1.00876 1.19410 0.73141 0.81963 0.84726 1.90920 1.44279 1.86259 1.19418 1.84616 1.80965 1.17741 1.49363 1.82944 1.59050 1.02365 1.04661 0.93586 0.93127 0.93071 0.90663 0.93125 0.90744 0.92356 0.92751 0.91739 0.92805 0.93845 0.93066 0.92158 0.95158 0.95492 0.92693 0.90722 0.91311 0.82482 0.83327 0.72906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.68 37.16 0.36 -1.52 16 2 C -0.11 -1.53 5.34 -26.73 -0.14 -1.67 16 3 C -0.08 -1.24 1.83 -90.62 -0.17 -1.40 16 4 C -0.12 -1.57 5.29 -26.73 -0.14 -1.71 16 5 C -0.15 -2.27 9.78 37.16 0.36 -1.91 16 6 C 0.06 1.04 4.08 -3.83 -0.02 1.03 16 7 N -0.53 -9.53 4.00 -237.52 -0.95 -10.48 16 8 C 0.15 3.28 3.71 -4.97 -0.02 3.26 16 9 C -0.55 -13.64 7.89 -34.44 -0.27 -13.91 16 10 H 0.07 2.02 6.19 -52.49 -0.32 1.69 16 11 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 12 N -0.90 -25.69 13.96 55.43 0.77 -24.91 16 13 Si 0.87 20.65 27.43 -169.99 -4.66 15.98 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.26 -6.09 6.64 56.52 0.38 -5.71 16 17 C 0.12 1.97 5.21 -4.98 -0.03 1.94 16 18 C -0.14 -2.31 5.08 -35.85 -0.18 -2.49 16 19 C -0.16 -2.63 8.79 -41.42 -0.36 -2.99 16 20 C -0.03 -0.44 10.01 -40.42 -0.40 -0.84 16 21 C -0.30 -4.50 6.45 -36.84 -0.24 -4.74 16 22 C 0.56 8.09 8.30 34.01 0.28 8.37 16 23 O -0.52 -8.66 17.63 -19.37 -0.34 -9.00 16 24 O -0.52 -5.54 13.29 -41.03 -0.55 -6.08 16 25 S 0.24 3.37 22.87 -107.50 -2.46 0.91 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.58 6.42 -51.93 -0.33 0.24 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 1.14 7.59 -51.93 -0.39 0.75 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.34 6.53 -51.93 -0.34 1.00 16 32 H 0.06 0.73 6.27 -51.93 -0.33 0.40 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 1.07 6.40 -51.93 -0.33 0.73 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.04 0.56 8.14 -51.92 -0.42 0.13 16 37 H 0.05 0.77 7.83 -51.93 -0.41 0.37 16 38 H 0.06 1.17 4.65 -51.93 -0.24 0.93 16 39 H 0.03 0.69 5.97 -51.93 -0.31 0.38 16 40 H 0.03 0.61 5.54 -51.93 -0.29 0.32 16 41 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.07 1.43 6.34 -51.93 -0.33 1.10 16 43 H 0.07 1.00 7.87 -51.93 -0.41 0.59 16 44 H 0.16 2.91 8.06 -52.48 -0.42 2.49 16 45 H 0.15 2.19 8.06 -52.49 -0.42 1.77 16 46 H 0.41 2.33 9.11 45.56 0.42 2.75 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -29.38 376.91 -9.73 -39.11 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.16 Total: 5.37 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -1.06 Total: -16.59 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.18 Total: -35.39 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.89 Total: -15.08 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.66 Total: 15.98 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -2.46 Total: 0.91 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.38 -9.73 -39.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828859249.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.011 kcal (2) G-P(sol) polarization free energy of solvation -29.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds