Wall clock time and date at job start Tue Mar 31 2020 14:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47049 * 2 1 4 4 C 1.52998 * 109.46564 * 65.00451 * 3 2 1 5 5 C 1.53009 * 109.46653 * 186.93724 * 4 3 2 6 6 C 1.53000 * 109.46920 * 185.00352 * 3 2 1 7 7 N 1.46892 * 109.47209 * 64.25993 * 6 3 2 8 8 C 1.46907 * 111.00298 * 70.92288 * 7 6 3 9 9 C 1.50695 * 109.46770 * 61.86897 * 8 7 6 10 10 H 1.08001 * 120.00116 * 4.41134 * 9 8 7 11 11 C 1.37879 * 119.99941 * 184.41249 * 9 8 7 12 12 N 1.31517 * 120.00238 * 184.95794 * 11 9 8 13 13 Si 1.86801 * 120.00069 * 4.95716 * 11 9 8 14 14 H 1.48495 * 109.47009 * 94.59758 * 13 11 9 15 15 H 1.48497 * 109.47308 * 214.60133 * 13 11 9 16 16 H 1.48499 * 109.46877 * 334.60148 * 13 11 9 17 17 C 1.46900 * 111.00113 * 194.87663 * 7 6 3 18 18 C 1.50701 * 109.47107 * 169.90927 * 17 7 6 19 19 C 1.33859 * 124.51710 * 94.81684 * 18 17 7 20 20 C 1.37417 * 115.11159 * 179.78614 * 19 18 17 21 21 C 1.36746 * 113.28336 * 0.48805 * 20 19 18 22 22 C 1.46394 * 125.46299 * 179.75770 * 21 20 19 23 23 O 1.21635 * 119.99940 * 0.02562 * 22 21 20 24 24 O 1.34895 * 120.00615 * 180.02562 * 22 21 20 25 25 S 1.70616 * 124.52057 * 275.11293 * 18 17 7 26 26 H 1.09000 * 109.47199 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46738 * 299.99442 * 1 2 3 28 28 H 1.09000 * 109.47484 * 59.99795 * 1 2 3 29 29 H 1.09003 * 109.46738 * 240.00558 * 2 1 3 30 30 H 1.08996 * 109.47632 * 120.00696 * 2 1 3 31 31 H 1.08999 * 109.47160 * 305.00619 * 3 2 1 32 32 H 1.08997 * 109.47538 * 306.93436 * 4 3 2 33 33 H 1.09002 * 109.47391 * 66.93883 * 4 3 2 34 34 H 1.08998 * 109.47080 * 303.51612 * 5 4 3 35 35 H 1.08996 * 109.47307 * 63.52270 * 5 4 3 36 36 H 1.09008 * 109.47007 * 183.52545 * 5 4 3 37 37 H 1.09002 * 109.47173 * 304.25510 * 6 3 2 38 38 H 1.09001 * 109.46577 * 184.26015 * 6 3 2 39 39 H 1.08997 * 109.47287 * 181.86712 * 8 7 6 40 40 H 1.09000 * 109.46774 * 301.87274 * 8 7 6 41 41 H 0.96998 * 120.00067 * 179.97438 * 12 11 9 42 42 H 1.08999 * 109.47079 * 289.91302 * 17 7 6 43 43 H 1.09002 * 109.46775 * 49.90945 * 17 7 6 44 44 H 1.08005 * 122.44588 * 359.97438 * 19 18 17 45 45 H 1.07994 * 123.35443 * 180.27029 * 20 19 18 46 46 H 0.96696 * 117.00450 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1264 1.3074 5 6 1.9917 3.6127 1.2370 6 6 3.5648 1.4443 -0.1258 7 7 3.9495 0.8800 -1.4263 8 6 3.6102 1.7996 -2.5205 9 6 4.3748 3.0869 -2.3499 10 1 5.0985 3.1838 -1.5540 11 6 4.1505 4.1411 -3.2098 12 7 4.8853 5.2284 -3.1230 13 14 2.8030 4.0250 -4.4983 14 1 1.5594 4.6415 -3.9708 15 1 3.2292 4.7429 -5.7264 16 1 2.5494 2.5981 -4.8220 17 6 5.3780 0.5379 -1.4500 18 6 5.6833 -0.2581 -2.6926 19 6 6.1398 0.2665 -3.8364 20 6 6.3572 -0.6386 -4.8473 21 6 6.0528 -1.9246 -4.4961 22 6 6.1787 -3.0951 -5.3662 23 8 6.5838 -2.9651 -6.5057 24 8 5.8454 -4.3180 -4.9044 25 16 5.4866 -1.9472 -2.8316 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6053 1.9816 -0.8417 32 1 0.5612 2.0170 1.4574 33 1 2.1672 1.6642 2.1391 34 1 3.0553 3.7217 1.0249 35 1 1.4127 4.0881 0.4453 36 1 1.7611 4.0872 2.1909 37 1 3.9961 0.8418 0.6737 38 1 3.9344 2.4670 -0.0498 39 1 3.8754 1.3432 -3.4741 40 1 2.5404 2.0073 -2.5019 41 1 4.7277 5.9699 -3.7282 42 1 5.9706 1.4527 -1.4496 43 1 5.6242 -0.0549 -0.5690 44 1 6.3266 1.3237 -3.9551 45 1 6.7280 -0.3613 -5.8229 46 1 5.9457 -5.0605 -5.5156 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828859249.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:00 Heat of formation + Delta-G solvation = -91.444776 kcal Electronic energy + Delta-G solvation = -26081.794802 eV Core-core repulsion = 22482.750506 eV Total energy + Delta-G solvation = -3599.044295 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.12255 -39.90933 -38.58814 -37.06805 -36.55507 -34.48643 -32.48387 -31.95571 -29.98790 -28.91803 -26.97505 -25.11566 -24.66838 -23.42679 -23.29762 -21.95822 -20.34775 -20.06358 -19.56092 -18.97926 -18.07283 -17.01869 -16.83472 -16.66668 -16.45182 -16.03791 -15.56198 -15.31199 -15.17193 -14.83586 -14.49373 -14.35437 -14.02119 -13.97250 -13.86434 -13.41209 -13.32830 -13.13703 -12.79879 -12.67143 -12.63387 -12.57537 -12.48447 -12.27756 -12.23591 -11.96732 -11.83560 -11.76946 -11.72737 -11.61766 -11.19209 -11.14355 -10.96546 -10.70718 -9.79986 -9.43539 -8.90740 -8.28578 -6.28359 -0.63719 0.51466 0.96305 1.22363 1.29322 1.34537 1.43165 1.93334 2.04787 2.32803 3.08802 3.33624 3.90121 3.99072 4.11551 4.16162 4.23803 4.31854 4.44117 4.48338 4.58188 4.63314 4.65507 4.73196 4.83298 4.95659 4.98695 5.04502 5.08427 5.09780 5.14605 5.16809 5.21119 5.26550 5.30370 5.37888 5.40419 5.43596 5.49648 5.53178 5.63342 5.69528 5.75491 6.13482 6.35320 6.43726 6.77123 6.92087 7.37026 8.86996 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010506 B = 0.004601 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.446573 B = 6084.019240 C = 7666.712455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 C -0.078 4.078 4 C -0.108 4.108 5 C -0.152 4.152 6 C 0.063 3.937 7 N -0.517 5.517 8 C 0.165 3.835 9 C -0.525 4.525 10 H 0.044 0.956 11 C 0.025 3.975 12 N -0.942 5.942 13 Si 0.922 3.078 14 H -0.273 1.273 15 H -0.289 1.289 16 H -0.251 1.251 17 C 0.119 3.881 18 C -0.165 4.165 19 C -0.166 4.166 20 C -0.040 4.040 21 C -0.305 4.305 22 C 0.570 3.430 23 O -0.545 6.545 24 O -0.502 6.502 25 S 0.317 5.683 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.038 0.962 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.034 0.966 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.027 0.973 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.262 0.738 42 H 0.043 0.957 43 H 0.100 0.900 44 H 0.129 0.871 45 H 0.152 0.848 46 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.496 -17.073 5.879 18.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.142 4.142 3 C -0.097 4.097 4 C -0.146 4.146 5 C -0.209 4.209 6 C -0.065 4.065 7 N -0.239 5.239 8 C 0.037 3.963 9 C -0.564 4.564 10 H 0.062 0.938 11 C -0.174 4.174 12 N -0.583 5.583 13 Si 0.747 3.253 14 H -0.198 1.198 15 H -0.215 1.215 16 H -0.174 1.174 17 C -0.010 4.010 18 C -0.286 4.286 19 C -0.197 4.197 20 C -0.075 4.075 21 C -0.424 4.424 22 C 0.416 3.584 23 O -0.438 6.438 24 O -0.317 6.317 25 S 0.587 5.413 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.045 0.955 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.118 0.882 44 H 0.147 0.853 45 H 0.169 0.831 46 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges -4.194 -18.167 6.732 19.823 hybrid contribution 0.824 2.677 -2.417 3.699 sum -3.370 -15.491 4.316 16.430 Atomic orbital electron populations 1.21820 0.95911 1.01659 1.01338 1.21397 0.95422 0.95161 1.02251 1.21111 0.94189 0.96967 0.97422 1.21536 1.01745 0.94366 0.96960 1.21794 1.00806 0.97377 1.00972 1.22128 0.96243 0.97976 0.90115 1.62518 1.14626 1.42715 1.04070 1.19991 0.95327 0.89512 0.91455 1.21719 1.22350 0.98282 1.14049 0.93764 1.25581 0.97653 0.95117 0.99023 1.70049 1.41295 1.06922 1.40002 0.86088 0.80441 0.79421 0.79348 1.19844 1.21534 1.17424 1.20552 0.90676 0.97039 0.92742 1.24501 1.02717 1.00873 1.00505 1.20028 1.05446 1.01362 0.92842 1.20731 0.96253 0.90084 1.00417 1.23555 1.21359 0.95453 1.02028 1.19222 0.72571 0.82677 0.83966 1.90918 1.45558 1.86843 1.20525 1.84550 1.79969 1.17307 1.49846 1.82562 1.56917 0.98948 1.02853 0.92013 0.91988 0.94319 0.92106 0.91300 0.93878 0.90584 0.90863 0.94295 0.94658 0.91683 0.90454 0.95485 0.95858 0.95913 0.92889 0.93910 0.88212 0.85307 0.83069 0.70032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.68 71.98 0.70 -2.54 16 2 C -0.10 -2.58 5.34 30.60 0.16 -2.42 16 3 C -0.08 -2.31 1.83 -10.79 -0.02 -2.33 16 4 C -0.11 -2.72 5.29 30.60 0.16 -2.56 16 5 C -0.15 -4.48 9.78 71.99 0.70 -3.78 16 6 C 0.06 2.09 4.08 86.30 0.35 2.44 16 7 N -0.52 -18.50 4.00 -905.38 -3.62 -22.13 16 8 C 0.16 7.27 3.71 85.55 0.32 7.59 16 9 C -0.52 -27.41 7.89 25.60 0.20 -27.21 16 10 H 0.04 2.55 6.19 -2.91 -0.02 2.54 16 11 C 0.02 1.37 5.47 84.65 0.46 1.83 16 12 N -0.94 -56.63 13.96 21.45 0.30 -56.33 16 13 Si 0.92 43.59 27.43 68.60 1.88 45.47 16 14 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 15 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 16 H -0.25 -11.27 6.64 99.48 0.66 -10.61 16 17 C 0.12 3.99 5.21 85.56 0.45 4.44 16 18 C -0.17 -5.27 5.08 24.69 0.13 -5.15 16 19 C -0.17 -5.79 8.79 21.08 0.19 -5.61 16 20 C -0.04 -1.26 10.01 21.73 0.22 -1.04 16 21 C -0.31 -8.74 6.45 24.04 0.16 -8.58 16 22 C 0.57 15.10 8.30 69.94 0.58 15.68 16 23 O -0.55 -17.43 17.63 19.40 0.34 -17.09 16 24 O -0.50 -9.03 13.29 -58.10 -0.77 -9.80 16 25 S 0.32 8.05 22.87 -56.49 -1.29 6.76 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.19 6.42 -2.39 -0.02 1.18 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 1.69 7.59 -2.39 -0.02 1.67 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.04 1.55 6.53 -2.39 -0.02 1.53 16 32 H 0.08 1.67 6.27 -2.39 -0.01 1.66 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.04 1.33 6.40 -2.39 -0.02 1.31 16 35 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.08 2.16 7.83 -2.39 -0.02 2.14 16 38 H 0.03 1.09 4.65 -2.39 -0.01 1.08 16 39 H 0.02 1.08 5.97 -2.39 -0.01 1.06 16 40 H 0.02 1.04 5.54 -2.39 -0.01 1.03 16 41 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 42 H 0.04 1.72 6.34 -2.39 -0.02 1.70 16 43 H 0.10 2.70 7.87 -2.39 -0.02 2.68 16 44 H 0.13 5.15 8.06 -2.91 -0.02 5.13 16 45 H 0.15 4.56 8.06 -2.91 -0.02 4.54 16 46 H 0.44 3.30 9.11 -74.06 -0.67 2.63 16 Total: -1.00 -65.92 376.91 1.86 -64.05 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.28 Total: 18.30 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 4.75 Total: -29.24 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -3.32 Total: -78.45 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.43 Total: -26.89 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.47 kcal Atomic # 16 Polarization: 8.05 SS G_CDS: -1.29 Total: 6.76 kcal Total: -65.92 1.86 -64.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828859249.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.391 kcal (2) G-P(sol) polarization free energy of solvation -65.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds