Wall clock time and date at job start Tue Mar 31 2020 14:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38226 * 120.42162 * 2 1 4 4 N 1.31859 * 120.76077 * 180.02562 * 3 2 1 5 5 C 1.31881 * 121.72949 * 359.97369 * 4 3 2 6 6 C 1.38186 * 120.76443 * 359.74614 * 5 4 3 7 7 C 1.38635 * 120.41742 * 180.02562 * 2 1 3 8 8 C 1.50697 * 120.78867 * 359.95052 * 7 2 1 9 9 H 1.08999 * 109.47129 * 327.12972 * 8 7 2 10 10 O 1.45200 * 109.47145 * 207.13192 * 8 7 2 11 11 C 1.34223 * 117.00123 * 89.99641 * 10 8 7 12 12 O 1.20829 * 120.00231 * 0.02562 * 11 10 8 13 13 C 1.50707 * 119.99823 * 179.97438 * 11 10 8 14 14 C 1.52999 * 109.47051 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47223 * 180.02562 * 14 13 11 16 16 H 1.07996 * 120.00270 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99984 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00002 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99972 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46860 * 0.02562 * 19 17 15 21 21 H 1.48493 * 109.47054 * 120.00067 * 19 17 15 22 22 H 1.48491 * 109.46991 * 239.99889 * 19 17 15 23 23 C 1.50697 * 109.47160 * 87.13092 * 8 7 2 24 24 C 1.38228 * 120.00424 * 74.95784 * 23 8 7 25 25 C 1.38233 * 120.00445 * 179.81154 * 24 23 8 26 26 C 1.38237 * 119.99753 * 0.41392 * 25 24 23 27 27 C 1.38229 * 119.99820 * 359.81891 * 26 25 24 28 28 C 1.38235 * 120.00343 * 359.97438 * 27 26 25 29 29 H 1.09010 * 109.47238 * 264.56753 * 1 2 3 30 30 H 1.09000 * 109.47140 * 24.56154 * 1 2 3 31 31 H 1.09002 * 109.47819 * 144.56987 * 1 2 3 32 32 H 1.07992 * 119.61649 * 0.02562 * 3 2 1 33 33 H 1.07994 * 119.61755 * 179.97438 * 5 4 3 34 34 H 1.07994 * 120.42025 * 180.25938 * 6 5 4 35 35 H 1.08994 * 109.47147 * 300.00135 * 13 11 10 36 36 H 1.09003 * 109.46913 * 60.00521 * 13 11 10 37 37 H 1.09000 * 109.47185 * 300.00490 * 14 13 11 38 38 H 1.09003 * 109.46867 * 60.00455 * 14 13 11 39 39 H 0.97005 * 119.99869 * 179.97438 * 18 17 15 40 40 H 1.08007 * 119.99716 * 359.97438 * 24 23 8 41 41 H 1.08001 * 120.00295 * 180.20774 * 25 24 23 42 42 H 1.08000 * 119.99577 * 179.79311 * 26 25 24 43 43 H 1.08004 * 119.99703 * 179.97438 * 27 26 25 44 44 H 1.08001 * 120.00208 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1998 -0.0005 5 6 4.2256 0.0822 -0.0005 6 6 3.5947 -1.1472 0.0053 7 6 2.2088 -1.1955 -0.0005 8 6 1.4830 -2.5162 0.0000 9 1 0.5520 -2.4189 0.5584 10 8 2.3180 -3.5272 0.6237 11 6 2.1913 -3.6887 1.9501 12 8 1.4083 -3.0082 2.5696 13 6 3.0250 -4.7197 2.6666 14 6 2.6888 -4.6998 4.1591 15 6 3.5228 -5.7303 4.8756 16 1 4.2230 -6.3383 4.3221 17 6 3.3920 -5.8969 6.2381 18 7 2.5390 -5.1569 6.9122 19 14 4.4264 -7.1738 7.1265 20 1 5.3019 -7.8688 6.1488 21 1 5.2651 -6.5043 8.1528 22 1 3.5349 -8.1627 7.7839 23 6 1.1776 -2.9221 -1.4188 24 6 2.1858 -3.4053 -2.2317 25 6 1.9050 -3.7813 -3.5319 26 6 0.6175 -3.6661 -4.0219 27 6 -0.3897 -3.1785 -3.2105 28 6 -0.1097 -2.8065 -1.9089 29 1 -0.3634 -0.0973 1.0231 30 1 -0.3633 0.9347 -0.4272 31 1 -0.3635 -0.8373 -0.5957 32 1 1.6675 2.1276 0.0004 33 1 5.3046 0.1284 -0.0014 34 1 4.1736 -2.0589 0.0095 35 1 2.8101 -5.7076 2.2593 36 1 4.0820 -4.4918 2.5288 37 1 2.9032 -3.7119 4.5667 38 1 1.6318 -4.9280 4.2964 39 1 2.4468 -5.2744 7.8706 40 1 3.1926 -3.4914 -1.8501 41 1 2.6920 -4.1619 -4.1660 42 1 0.3988 -3.9568 -5.0388 43 1 -1.3955 -3.0881 -3.5935 44 1 -0.8966 -2.4251 -1.2751 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835518251.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:23 Heat of formation + Delta-G solvation = -38.609650 kcal Electronic energy + Delta-G solvation = -26894.698618 eV Core-core repulsion = 23162.501475 eV Total energy + Delta-G solvation = -3732.197144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.05229 -39.74213 -39.19402 -36.45695 -34.32302 -33.62037 -32.52409 -31.39203 -31.14365 -31.05218 -27.79149 -26.84869 -25.77526 -23.33901 -22.82765 -22.35229 -22.14680 -20.82312 -19.80652 -17.59314 -17.47046 -17.16096 -16.59144 -15.98912 -15.84210 -15.44788 -15.16720 -15.03901 -14.68244 -14.49782 -14.39714 -13.75363 -13.64944 -13.47943 -13.33624 -12.89519 -12.83385 -12.64049 -12.41927 -12.28812 -12.18284 -11.59989 -11.46017 -11.27993 -11.14870 -11.00656 -10.72381 -10.65278 -10.10793 -10.01929 -9.75344 -9.56230 -9.54902 -9.20221 -9.13583 -8.99124 -8.95497 -8.40979 -6.04447 -4.09500 0.91660 1.05002 1.18046 1.22400 2.71744 2.89596 3.28971 3.36494 3.39885 3.55080 3.68945 4.35572 4.38502 4.43497 4.50752 4.63279 4.68038 4.77151 4.82463 4.88893 4.92684 5.07733 5.23863 5.30010 5.31227 5.36101 5.44747 5.47048 5.52898 5.64659 5.71258 5.81364 5.84254 5.95525 6.05396 6.10048 6.18485 6.20311 6.27717 6.32628 6.59836 6.61350 6.73575 6.84966 7.62879 7.68730 7.88928 7.94362 8.17694 8.34013 8.97616 9.54872 11.06536 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012595 B = 0.003232 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.549397 B = 8662.202038 C = 9753.230902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.119 4.119 3 C 0.096 3.904 4 N -0.481 5.481 5 C 0.091 3.909 6 C -0.147 4.147 7 C -0.054 4.054 8 C 0.168 3.832 9 H 0.105 0.895 10 O -0.351 6.351 11 C 0.456 3.544 12 O -0.499 6.499 13 C -0.102 4.102 14 C 0.033 3.967 15 C -0.528 4.528 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.889 5.889 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.081 4.081 24 C -0.086 4.086 25 C -0.122 4.122 26 C -0.115 4.115 27 C -0.121 4.121 28 C -0.106 4.106 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.140 0.860 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.025 0.975 38 H 0.026 0.974 39 H 0.261 0.739 40 H 0.128 0.872 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.595 7.688 -22.742 24.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.121 4.121 3 C -0.061 4.061 4 N -0.189 5.189 5 C -0.065 4.065 6 C -0.167 4.167 7 C -0.063 4.063 8 C 0.112 3.888 9 H 0.123 0.877 10 O -0.270 6.270 11 C 0.299 3.701 12 O -0.384 6.384 13 C -0.139 4.139 14 C -0.004 4.004 15 C -0.567 4.567 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.527 5.527 19 Si 0.723 3.277 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.082 4.082 24 C -0.104 4.104 25 C -0.140 4.140 26 C -0.133 4.133 27 C -0.139 4.139 28 C -0.124 4.124 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.173 0.827 33 H 0.174 0.826 34 H 0.158 0.842 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.071 0.929 40 H 0.146 0.854 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.469 8.753 -22.380 24.280 hybrid contribution 0.028 -1.399 0.676 1.554 sum -3.440 7.354 -21.704 23.173 Atomic orbital electron populations 1.20938 0.90341 1.03345 1.03336 1.20683 0.97601 0.93303 1.00560 1.22611 0.89967 0.97082 0.96466 1.67635 1.08276 1.31504 1.11531 1.22717 1.00379 0.87455 0.95983 1.22022 0.94374 1.00151 1.00136 1.20232 0.94300 0.94172 0.97561 1.20022 0.94251 0.83670 0.90831 0.87745 1.86665 1.61003 1.54246 1.25050 1.24910 0.82089 0.83656 0.79435 1.90635 1.35896 1.45348 1.66540 1.21792 0.98416 0.94796 0.98915 1.19024 0.97912 0.98180 0.85264 1.21174 1.22773 1.19879 0.92835 0.92239 1.25022 0.95451 0.96183 0.97650 1.70003 1.35378 1.39423 1.07902 0.86489 0.80164 0.81335 0.79732 1.19621 1.20946 1.20939 1.19428 0.94199 1.01117 0.93418 1.21048 0.99403 0.96667 0.93305 1.21184 0.96959 1.00204 0.95635 1.21211 0.93202 0.99104 0.99798 1.21087 0.99436 0.99570 0.93793 1.21031 0.95415 0.99727 0.96242 0.90124 0.90885 0.90968 0.82747 0.82572 0.84181 0.88833 0.88902 0.95610 0.95579 0.92877 0.85397 0.85761 0.85965 0.85714 0.85607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 9.14 36.00 0.33 -0.87 16 2 C -0.12 -1.49 5.90 -104.48 -0.62 -2.11 16 3 C 0.10 1.18 10.84 -17.54 -0.19 0.99 16 4 N -0.48 -6.60 10.36 -13.26 -0.14 -6.74 16 5 C 0.09 1.16 11.18 -17.55 -0.20 0.96 16 6 C -0.15 -1.94 9.43 -39.44 -0.37 -2.31 16 7 C -0.05 -0.75 4.98 -104.32 -0.52 -1.27 16 8 C 0.17 2.34 1.79 -29.04 -0.05 2.29 16 9 H 0.10 1.55 5.91 -51.93 -0.31 1.24 16 10 O -0.35 -5.59 8.38 -39.24 -0.33 -5.92 16 11 C 0.46 8.77 7.92 36.01 0.29 9.06 16 12 O -0.50 -11.11 15.20 -18.75 -0.29 -11.39 16 13 C -0.10 -2.04 5.75 -27.88 -0.16 -2.20 16 14 C 0.03 0.87 4.26 -27.88 -0.12 0.75 16 15 C -0.53 -14.64 9.11 -34.44 -0.31 -14.95 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 19 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.08 -0.97 4.89 -104.63 -0.51 -1.48 16 24 C -0.09 -0.96 9.31 -39.59 -0.37 -1.33 16 25 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 26 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 27 C -0.12 -1.06 10.05 -39.59 -0.40 -1.46 16 28 C -0.11 -1.09 8.57 -39.58 -0.34 -1.43 16 29 H 0.08 0.84 8.14 -51.92 -0.42 0.41 16 30 H 0.07 0.54 8.06 -51.93 -0.42 0.13 16 31 H 0.07 0.66 4.21 -51.93 -0.22 0.44 16 32 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.16 1.55 8.06 -52.49 -0.42 1.12 16 34 H 0.14 1.70 7.49 -52.49 -0.39 1.30 16 35 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 36 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 37 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 38 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.13 1.37 7.93 -52.48 -0.42 0.96 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 44 H 0.13 1.10 6.51 -52.49 -0.34 0.76 16 LS Contribution 373.85 15.07 5.63 5.63 Total: -1.00 -33.69 373.85 -9.70 -43.38 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -5.86 Total: 1.55 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -4.43 Total: -16.69 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 0.60 Total: -32.85 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.61 Total: -17.32 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.69 -9.70 -43.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835518251.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.772 kcal (2) G-P(sol) polarization free energy of solvation -33.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds