Wall clock time and date at job start Tue Mar 31 2020 14:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38226 * 120.42162 * 2 1 4 4 N 1.31859 * 120.76077 * 180.02562 * 3 2 1 5 5 C 1.31881 * 121.72949 * 359.97369 * 4 3 2 6 6 C 1.38186 * 120.76443 * 359.74614 * 5 4 3 7 7 C 1.38635 * 120.41742 * 180.02562 * 2 1 3 8 8 C 1.50697 * 120.78867 * 359.95052 * 7 2 1 9 9 H 1.08999 * 109.47129 * 327.12972 * 8 7 2 10 10 O 1.45200 * 109.47145 * 207.13192 * 8 7 2 11 11 C 1.34223 * 117.00123 * 89.99641 * 10 8 7 12 12 O 1.20829 * 120.00231 * 0.02562 * 11 10 8 13 13 C 1.50707 * 119.99823 * 179.97438 * 11 10 8 14 14 C 1.52999 * 109.47051 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47223 * 180.02562 * 14 13 11 16 16 H 1.07996 * 120.00270 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99984 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00002 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99972 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46860 * 0.02562 * 19 17 15 21 21 H 1.48493 * 109.47054 * 120.00067 * 19 17 15 22 22 H 1.48491 * 109.46991 * 239.99889 * 19 17 15 23 23 C 1.50697 * 109.47160 * 87.13092 * 8 7 2 24 24 C 1.38228 * 120.00424 * 74.95784 * 23 8 7 25 25 C 1.38233 * 120.00445 * 179.81154 * 24 23 8 26 26 C 1.38237 * 119.99753 * 0.41392 * 25 24 23 27 27 C 1.38229 * 119.99820 * 359.81891 * 26 25 24 28 28 C 1.38235 * 120.00343 * 359.97438 * 27 26 25 29 29 H 1.09010 * 109.47238 * 264.56753 * 1 2 3 30 30 H 1.09000 * 109.47140 * 24.56154 * 1 2 3 31 31 H 1.09002 * 109.47819 * 144.56987 * 1 2 3 32 32 H 1.07992 * 119.61649 * 0.02562 * 3 2 1 33 33 H 1.07994 * 119.61755 * 179.97438 * 5 4 3 34 34 H 1.07994 * 120.42025 * 180.25938 * 6 5 4 35 35 H 1.08994 * 109.47147 * 300.00135 * 13 11 10 36 36 H 1.09003 * 109.46913 * 60.00521 * 13 11 10 37 37 H 1.09000 * 109.47185 * 300.00490 * 14 13 11 38 38 H 1.09003 * 109.46867 * 60.00455 * 14 13 11 39 39 H 0.97005 * 119.99869 * 179.97438 * 18 17 15 40 40 H 1.08007 * 119.99716 * 359.97438 * 24 23 8 41 41 H 1.08001 * 120.00295 * 180.20774 * 25 24 23 42 42 H 1.08000 * 119.99577 * 179.79311 * 26 25 24 43 43 H 1.08004 * 119.99703 * 179.97438 * 27 26 25 44 44 H 1.08001 * 120.00208 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1998 -0.0005 5 6 4.2256 0.0822 -0.0005 6 6 3.5947 -1.1472 0.0053 7 6 2.2088 -1.1955 -0.0005 8 6 1.4830 -2.5162 0.0000 9 1 0.5520 -2.4189 0.5584 10 8 2.3180 -3.5272 0.6237 11 6 2.1913 -3.6887 1.9501 12 8 1.4083 -3.0082 2.5696 13 6 3.0250 -4.7197 2.6666 14 6 2.6888 -4.6998 4.1591 15 6 3.5228 -5.7303 4.8756 16 1 4.2230 -6.3383 4.3221 17 6 3.3920 -5.8969 6.2381 18 7 2.5390 -5.1569 6.9122 19 14 4.4264 -7.1738 7.1265 20 1 5.3019 -7.8688 6.1488 21 1 5.2651 -6.5043 8.1528 22 1 3.5349 -8.1627 7.7839 23 6 1.1776 -2.9221 -1.4188 24 6 2.1858 -3.4053 -2.2317 25 6 1.9050 -3.7813 -3.5319 26 6 0.6175 -3.6661 -4.0219 27 6 -0.3897 -3.1785 -3.2105 28 6 -0.1097 -2.8065 -1.9089 29 1 -0.3634 -0.0973 1.0231 30 1 -0.3633 0.9347 -0.4272 31 1 -0.3635 -0.8373 -0.5957 32 1 1.6675 2.1276 0.0004 33 1 5.3046 0.1284 -0.0014 34 1 4.1736 -2.0589 0.0095 35 1 2.8101 -5.7076 2.2593 36 1 4.0820 -4.4918 2.5288 37 1 2.9032 -3.7119 4.5667 38 1 1.6318 -4.9280 4.2964 39 1 2.4468 -5.2744 7.8706 40 1 3.1926 -3.4914 -1.8501 41 1 2.6920 -4.1619 -4.1660 42 1 0.3988 -3.9568 -5.0388 43 1 -1.3955 -3.0881 -3.5935 44 1 -0.8966 -2.4251 -1.2751 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835518251.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:22 Heat of formation + Delta-G solvation = -55.792540 kcal Electronic energy + Delta-G solvation = -26895.443724 eV Core-core repulsion = 23162.501475 eV Total energy + Delta-G solvation = -3732.942250 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.20259 -40.99646 -40.04259 -37.83451 -35.68036 -35.33353 -33.53161 -33.07043 -32.20577 -31.82477 -28.83092 -28.16542 -27.28144 -24.65599 -23.76277 -23.52450 -23.17063 -21.92192 -21.31898 -19.18603 -18.47584 -18.39917 -17.99786 -17.33461 -17.03008 -16.66791 -16.47528 -16.11428 -15.99323 -15.59753 -15.39838 -15.05653 -14.57743 -14.39860 -14.36039 -14.26668 -14.16985 -13.73822 -13.55241 -13.52042 -13.27161 -13.12391 -12.87797 -12.52353 -12.48375 -12.35369 -12.05140 -11.98174 -11.91624 -11.76820 -11.49985 -11.28925 -10.65501 -10.60421 -10.55015 -9.93436 -9.86159 -9.76795 -8.21584 -6.35406 -0.00239 0.08778 0.34225 0.45098 1.16346 1.42356 1.43484 1.55767 1.60103 2.41757 2.69587 2.79518 3.12525 3.33457 3.48747 3.57105 3.68131 3.83374 3.89690 3.94196 4.03196 4.11710 4.14558 4.25686 4.39092 4.40723 4.44959 4.56913 4.61014 4.63762 4.68443 4.75349 4.85281 4.94490 4.95441 5.07672 5.11480 5.19202 5.31503 5.44638 5.49606 5.51943 5.57102 5.59949 5.67257 5.78470 6.02833 6.10927 6.71599 6.83444 6.91207 7.35080 8.91218 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012595 B = 0.003232 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.549397 B = 8662.202038 C = 9753.230902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.129 4.129 3 C 0.090 3.910 4 N -0.500 5.500 5 C 0.084 3.916 6 C -0.160 4.160 7 C -0.072 4.072 8 C 0.170 3.830 9 H 0.091 0.909 10 O -0.340 6.340 11 C 0.465 3.535 12 O -0.537 6.537 13 C -0.093 4.093 14 C 0.040 3.960 15 C -0.543 4.543 16 H 0.078 0.922 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.973 3.027 20 H -0.253 1.253 21 H -0.281 1.281 22 H -0.280 1.280 23 C -0.101 4.101 24 C -0.103 4.103 25 C -0.126 4.126 26 C -0.113 4.113 27 C -0.121 4.121 28 C -0.116 4.116 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.182 0.818 33 H 0.180 0.820 34 H 0.145 0.855 35 H 0.117 0.883 36 H 0.117 0.883 37 H -0.012 1.012 38 H -0.010 1.010 39 H 0.264 0.736 40 H 0.124 0.876 41 H 0.145 0.855 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.031 6.805 -25.034 26.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.130 4.130 3 C -0.067 4.067 4 N -0.209 5.209 5 C -0.072 4.072 6 C -0.180 4.180 7 C -0.080 4.080 8 C 0.115 3.885 9 H 0.109 0.891 10 O -0.257 6.257 11 C 0.310 3.690 12 O -0.426 6.426 13 C -0.130 4.130 14 C 0.003 3.997 15 C -0.581 4.581 16 H 0.096 0.904 17 C -0.202 4.202 18 N -0.575 5.575 19 Si 0.797 3.203 20 H -0.176 1.176 21 H -0.207 1.207 22 H -0.206 1.206 23 C -0.101 4.101 24 C -0.121 4.121 25 C -0.144 4.144 26 C -0.131 4.131 27 C -0.139 4.139 28 C -0.134 4.134 29 H 0.089 0.911 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.199 0.801 33 H 0.197 0.803 34 H 0.163 0.837 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.006 0.994 38 H 0.008 0.992 39 H 0.072 0.928 40 H 0.142 0.858 41 H 0.163 0.837 42 H 0.169 0.831 43 H 0.169 0.831 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.889 7.862 -24.717 26.098 hybrid contribution -0.207 -1.071 1.274 1.677 sum -3.096 6.791 -23.444 24.603 Atomic orbital electron populations 1.20990 0.88680 1.05072 1.03064 1.20996 0.98991 0.92985 1.00072 1.23092 0.89839 0.98134 0.95649 1.67684 1.09036 1.31952 1.12231 1.23104 1.01557 0.87073 0.95448 1.22168 0.94415 1.00725 1.00645 1.20396 0.94805 0.94483 0.98318 1.20159 0.93113 0.83402 0.91796 0.89119 1.86612 1.61194 1.54899 1.22975 1.24615 0.81164 0.82867 0.80390 1.90625 1.37506 1.46779 1.67655 1.21538 0.99837 0.96468 0.95166 1.18783 0.95664 0.95854 0.89413 1.21657 1.22910 1.20046 0.93445 0.90393 1.26094 0.96720 0.98505 0.98832 1.70167 1.37438 1.41585 1.08329 0.85273 0.78348 0.78231 0.78420 1.17604 1.20678 1.20574 1.19380 0.95426 1.03082 0.92237 1.21145 0.99119 0.97502 0.94311 1.21475 0.98172 0.99668 0.95040 1.21615 0.92633 0.97768 1.01042 1.21442 1.00901 0.98498 0.93024 1.21228 0.94909 0.99958 0.97306 0.91064 0.88201 0.90458 0.80105 0.80305 0.83696 0.86537 0.86536 0.99377 0.99158 0.92762 0.85816 0.83679 0.83090 0.83078 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 9.14 71.23 0.65 -1.68 16 2 C -0.13 -3.21 5.90 -19.77 -0.12 -3.33 16 3 C 0.09 2.16 10.84 84.69 0.92 3.08 16 4 N -0.50 -13.52 10.36 -195.85 -2.03 -15.55 16 5 C 0.08 2.12 11.18 84.67 0.95 3.07 16 6 C -0.16 -4.26 9.43 22.36 0.21 -4.05 16 7 C -0.07 -2.00 4.98 -19.67 -0.10 -2.10 16 8 C 0.17 4.86 1.79 29.10 0.05 4.91 16 9 H 0.09 2.82 5.91 -2.39 -0.01 2.81 16 10 O -0.34 -10.96 8.38 -51.35 -0.43 -11.39 16 11 C 0.46 18.36 7.92 71.24 0.56 18.93 16 12 O -0.54 -25.14 15.20 21.96 0.33 -24.81 16 13 C -0.09 -3.73 5.75 29.85 0.17 -3.56 16 14 C 0.04 2.17 4.26 29.85 0.13 2.30 16 15 C -0.54 -30.23 9.11 25.60 0.23 -30.00 16 16 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 17 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 18 N -0.94 -58.19 13.29 21.45 0.28 -57.90 16 19 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 20 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 C -0.10 -2.38 4.89 -19.87 -0.10 -2.48 16 24 C -0.10 -2.21 9.31 22.27 0.21 -2.00 16 25 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 26 C -0.11 -1.59 10.05 22.27 0.22 -1.37 16 27 C -0.12 -1.82 10.05 22.27 0.22 -1.59 16 28 C -0.12 -2.25 8.57 22.27 0.19 -2.06 16 29 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.10 1.33 8.06 -2.39 -0.02 1.31 16 31 H 0.08 1.39 4.21 -2.39 -0.01 1.38 16 32 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 33 H 0.18 3.43 8.06 -2.91 -0.02 3.40 16 34 H 0.15 3.55 7.49 -2.91 -0.02 3.53 16 35 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 36 H 0.12 4.13 8.14 -2.39 -0.02 4.12 16 37 H -0.01 -0.74 8.10 -2.39 -0.02 -0.76 16 38 H -0.01 -0.61 8.10 -2.39 -0.02 -0.63 16 39 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 40 H 0.12 2.64 7.93 -2.91 -0.02 2.61 16 41 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 42 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 43 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 44 H 0.13 2.25 6.51 -2.91 -0.02 2.23 16 Total: -1.00 -75.29 373.85 6.29 -69.00 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 1.01 Total: 18.51 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: 5.10 Total: -23.54 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -1.74 Total: -73.45 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -0.10 Total: -36.19 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -75.29 6.29 -69.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835518251.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.212 kcal (2) G-P(sol) polarization free energy of solvation -75.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds