Wall clock time and date at job start Tue Mar 31 2020 14:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38228 * 120.42130 * 2 1 4 4 N 1.31851 * 120.76694 * 180.02562 * 3 2 1 5 5 C 1.31890 * 121.72410 * 359.97438 * 4 3 2 6 6 C 1.38177 * 120.76581 * 0.02562 * 5 4 3 7 7 C 1.38633 * 120.41924 * 180.02562 * 2 1 3 8 8 C 1.50703 * 120.78826 * 0.02562 * 7 2 1 9 9 H 1.08994 * 109.47117 * 33.33364 * 8 7 2 10 10 O 1.45193 * 109.46882 * 153.33918 * 8 7 2 11 11 C 1.34227 * 117.00142 * 269.99433 * 10 8 7 12 12 O 1.20826 * 119.99961 * 0.02562 * 11 10 8 13 13 C 1.50698 * 120.00423 * 180.02562 * 11 10 8 14 14 C 1.52999 * 109.47419 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.46828 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00493 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99336 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00113 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99623 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47197 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47425 * 120.00084 * 19 17 15 22 22 H 1.48504 * 109.46749 * 239.99928 * 19 17 15 23 23 C 1.50702 * 109.46548 * 273.33705 * 8 7 2 24 24 C 1.38237 * 120.00107 * 283.39288 * 23 8 7 25 25 C 1.38231 * 119.99877 * 179.79326 * 24 23 8 26 26 C 1.38232 * 120.00359 * 0.45797 * 25 24 23 27 27 C 1.38241 * 119.99609 * 359.77140 * 26 25 24 28 28 C 1.38234 * 119.99871 * 103.66811 * 23 8 7 29 29 H 1.09004 * 109.46712 * 95.53610 * 1 2 3 30 30 H 1.08990 * 109.47422 * 215.53664 * 1 2 3 31 31 H 1.08999 * 109.46843 * 335.54277 * 1 2 3 32 32 H 1.08003 * 119.61309 * 0.02562 * 3 2 1 33 33 H 1.08000 * 119.61543 * 179.97438 * 5 4 3 34 34 H 1.08001 * 120.42385 * 180.02562 * 6 5 4 35 35 H 1.09006 * 109.47293 * 300.00333 * 13 11 10 36 36 H 1.09004 * 109.47085 * 59.99716 * 13 11 10 37 37 H 1.08999 * 109.47105 * 299.99696 * 14 13 11 38 38 H 1.08993 * 109.46884 * 59.99828 * 14 13 11 39 39 H 0.97002 * 119.99409 * 180.02562 * 18 17 15 40 40 H 1.07999 * 119.99827 * 0.02562 * 24 23 8 41 41 H 1.08007 * 119.99773 * 180.25238 * 25 24 23 42 42 H 1.08002 * 120.00466 * 179.79185 * 26 25 24 43 43 H 1.07999 * 119.99789 * 179.97438 * 27 26 25 44 44 H 1.08000 * 119.99811 * 359.97438 * 28 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2257 0.0823 -0.0005 6 6 3.5948 -1.1471 -0.0005 7 6 2.2089 -1.1955 -0.0005 8 6 1.4831 -2.5162 -0.0017 9 1 0.5559 -2.4207 -0.5667 10 8 2.3224 -3.5291 -0.6163 11 6 2.2047 -3.6951 -1.9431 12 8 1.4264 -3.0162 -2.5702 13 6 3.0431 -4.7283 -2.6505 14 6 2.7179 -4.7125 -4.1455 15 6 3.5569 -5.7454 -4.8530 16 1 4.2528 -6.3520 -4.2925 17 6 3.4360 -5.9157 -6.2158 18 7 2.5882 -5.1774 -6.8982 19 14 4.4755 -7.1964 -7.0928 20 1 5.3428 -7.8896 -6.1067 21 1 3.5877 -8.1863 -7.7540 22 1 5.3227 -6.5308 -8.1148 23 6 1.1682 -2.9174 1.4164 24 6 2.1638 -3.4298 2.2270 25 6 1.8758 -3.7938 3.5291 26 6 0.5903 -3.6544 4.0176 27 6 -0.4064 -3.1464 3.2055 28 6 -0.1175 -2.7784 1.9047 29 1 -0.3633 -0.0991 -1.0229 30 1 -0.3634 -0.8362 0.5972 31 1 -0.3633 0.9355 0.4255 32 1 1.6675 2.1276 0.0004 33 1 5.3047 0.1285 -0.0014 34 1 4.1737 -2.0588 -0.0001 35 1 4.0992 -4.5000 -2.5064 36 1 2.8257 -5.7149 -2.2414 37 1 1.6619 -4.9407 -4.2900 38 1 2.9357 -3.7259 -4.5542 39 1 2.5030 -5.2976 -7.8570 40 1 3.1674 -3.5422 1.8442 41 1 2.6546 -4.1904 4.1638 42 1 0.3645 -3.9419 5.0339 43 1 -1.4109 -3.0378 3.5870 44 1 -0.8962 -2.3819 1.2700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835518253.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:25 Heat of formation + Delta-G solvation = -55.472310 kcal Electronic energy + Delta-G solvation = -26896.552912 eV Core-core repulsion = 23163.624548 eV Total energy + Delta-G solvation = -3732.928363 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.20350 -40.99715 -40.04290 -37.83545 -35.68037 -35.33623 -33.52786 -33.06923 -32.20536 -31.82796 -28.83623 -28.16387 -27.27826 -24.65944 -23.76171 -23.51728 -23.17804 -21.91989 -21.31884 -19.18545 -18.47921 -18.40198 -17.99769 -17.33173 -17.03226 -16.66727 -16.47557 -16.11602 -15.99120 -15.59570 -15.40183 -15.06077 -14.57857 -14.40818 -14.35764 -14.26670 -14.17291 -13.74165 -13.54957 -13.51014 -13.26449 -13.12596 -12.87778 -12.52086 -12.48245 -12.35634 -12.05109 -11.97771 -11.91501 -11.76847 -11.50006 -11.28879 -10.65024 -10.60425 -10.55288 -9.93411 -9.86001 -9.76586 -8.21590 -6.35401 -0.00078 0.08834 0.34404 0.45170 1.16312 1.42349 1.43472 1.55619 1.59828 2.41762 2.69579 2.79445 3.12541 3.33478 3.48756 3.57152 3.68190 3.83256 3.89520 3.94328 4.03324 4.11418 4.14546 4.25725 4.39040 4.40747 4.44950 4.56906 4.61239 4.63784 4.68789 4.75338 4.85270 4.94533 4.95476 5.07748 5.11651 5.19385 5.31420 5.44658 5.49691 5.51968 5.57230 5.60088 5.67284 5.78497 6.02915 6.10897 6.71565 6.83447 6.91197 7.35090 8.91224 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012608 B = 0.003231 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.359621 B = 8662.714697 C = 9756.490238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.128 4.128 3 C 0.090 3.910 4 N -0.500 5.500 5 C 0.084 3.916 6 C -0.160 4.160 7 C -0.072 4.072 8 C 0.170 3.830 9 H 0.091 0.909 10 O -0.340 6.340 11 C 0.465 3.535 12 O -0.537 6.537 13 C -0.093 4.093 14 C 0.040 3.960 15 C -0.543 4.543 16 H 0.078 0.922 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.973 3.027 20 H -0.253 1.253 21 H -0.280 1.280 22 H -0.281 1.281 23 C -0.101 4.101 24 C -0.103 4.103 25 C -0.126 4.126 26 C -0.113 4.113 27 C -0.121 4.121 28 C -0.117 4.117 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.182 0.818 33 H 0.180 0.820 34 H 0.145 0.855 35 H 0.117 0.883 36 H 0.117 0.883 37 H -0.010 1.010 38 H -0.012 1.012 39 H 0.264 0.736 40 H 0.124 0.876 41 H 0.145 0.855 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.221 6.867 25.001 26.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.130 4.130 3 C -0.067 4.067 4 N -0.209 5.209 5 C -0.072 4.072 6 C -0.180 4.180 7 C -0.080 4.080 8 C 0.115 3.885 9 H 0.109 0.891 10 O -0.257 6.257 11 C 0.310 3.690 12 O -0.426 6.426 13 C -0.130 4.130 14 C 0.003 3.997 15 C -0.581 4.581 16 H 0.096 0.904 17 C -0.202 4.202 18 N -0.575 5.575 19 Si 0.797 3.203 20 H -0.176 1.176 21 H -0.206 1.206 22 H -0.207 1.207 23 C -0.101 4.101 24 C -0.121 4.121 25 C -0.144 4.144 26 C -0.131 4.131 27 C -0.139 4.139 28 C -0.134 4.134 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.199 0.801 33 H 0.197 0.803 34 H 0.163 0.837 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.008 0.992 38 H 0.006 0.994 39 H 0.072 0.928 40 H 0.142 0.858 41 H 0.163 0.837 42 H 0.169 0.831 43 H 0.169 0.831 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.077 7.922 24.681 26.103 hybrid contribution -0.194 -1.074 -1.272 1.676 sum -3.271 6.847 23.409 24.608 Atomic orbital electron populations 1.21007 0.88671 1.05119 1.03085 1.20997 0.99000 0.92971 1.00072 1.23095 0.89838 0.98140 0.95643 1.67686 1.09042 1.31944 1.12235 1.23103 1.01556 0.87081 0.95459 1.22166 0.94424 1.00718 1.00656 1.20399 0.94802 0.94491 0.98308 1.20154 0.93000 0.83369 0.91936 0.89120 1.86609 1.61161 1.54800 1.23103 1.24614 0.81167 0.82893 0.80354 1.90625 1.37793 1.46925 1.67224 1.21539 0.99772 0.96426 0.95274 1.18783 0.95682 0.95856 0.89397 1.21659 1.23004 1.19988 0.93403 0.90388 1.26093 0.96762 0.98532 0.98768 1.70167 1.37673 1.41628 1.08051 0.85274 0.78337 0.78232 0.78429 1.17603 1.20578 1.20678 1.19388 0.95495 1.02957 0.92288 1.21145 0.99210 0.97445 0.94301 1.21474 0.98120 0.99752 0.95006 1.21617 0.92690 0.97717 1.01053 1.21444 1.00921 0.98471 0.93022 1.21230 0.94848 1.00025 0.97330 0.91056 0.90388 0.88198 0.80096 0.80319 0.83706 0.86535 0.86525 0.99160 0.99375 0.92764 0.85796 0.83687 0.83094 0.83069 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 9.14 71.24 0.65 -1.68 16 2 C -0.13 -3.20 5.90 -19.77 -0.12 -3.32 16 3 C 0.09 2.16 10.84 84.69 0.92 3.08 16 4 N -0.50 -13.54 10.36 -195.84 -2.03 -15.57 16 5 C 0.08 2.12 11.18 84.67 0.95 3.07 16 6 C -0.16 -4.28 9.43 22.36 0.21 -4.06 16 7 C -0.07 -2.00 5.00 -19.66 -0.10 -2.10 16 8 C 0.17 4.86 1.80 29.10 0.05 4.91 16 9 H 0.09 2.82 5.95 -2.39 -0.01 2.81 16 10 O -0.34 -10.94 8.32 -51.38 -0.43 -11.37 16 11 C 0.46 18.35 7.92 71.24 0.56 18.92 16 12 O -0.54 -25.14 15.20 21.96 0.33 -24.81 16 13 C -0.09 -3.73 5.75 29.85 0.17 -3.56 16 14 C 0.04 2.17 4.26 29.85 0.13 2.30 16 15 C -0.54 -30.22 9.11 25.60 0.23 -29.99 16 16 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 17 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 18 N -0.94 -58.18 13.29 21.45 0.28 -57.90 16 19 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 20 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 C -0.10 -2.38 4.90 -19.87 -0.10 -2.48 16 24 C -0.10 -2.21 9.33 22.27 0.21 -2.01 16 25 C -0.13 -2.09 10.05 22.27 0.22 -1.86 16 26 C -0.11 -1.60 10.05 22.27 0.22 -1.37 16 27 C -0.12 -1.81 10.05 22.27 0.22 -1.59 16 28 C -0.12 -2.25 8.56 22.27 0.19 -2.06 16 29 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.08 1.39 4.08 -2.39 -0.01 1.38 16 31 H 0.10 1.32 8.06 -2.39 -0.02 1.30 16 32 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 33 H 0.18 3.44 8.06 -2.91 -0.02 3.42 16 34 H 0.15 3.56 7.49 -2.91 -0.02 3.54 16 35 H 0.12 4.13 8.14 -2.38 -0.02 4.11 16 36 H 0.12 4.16 8.14 -2.38 -0.02 4.14 16 37 H -0.01 -0.61 8.10 -2.39 -0.02 -0.63 16 38 H -0.01 -0.74 8.10 -2.39 -0.02 -0.76 16 39 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 40 H 0.12 2.65 7.88 -2.91 -0.02 2.62 16 41 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 42 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 43 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 44 H 0.13 2.24 6.41 -2.91 -0.02 2.22 16 Total: -1.00 -75.30 373.58 6.29 -69.01 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 1.01 Total: 18.52 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: 5.10 Total: -23.55 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -1.74 Total: -73.47 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -0.09 Total: -36.18 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -75.30 6.29 -69.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835518253.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.538 kcal (2) G-P(sol) polarization free energy of solvation -75.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds