Wall clock time and date at job start Tue Mar 31 2020 13:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38680 * 120.41998 * 2 1 4 4 C 1.38628 * 118.42202 * 180.24263 * 3 2 1 5 5 C 1.38221 * 119.15921 * 359.75276 * 4 3 2 6 6 N 1.31855 * 120.76893 * 359.97438 * 5 4 3 7 7 C 1.31883 * 121.72126 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.61492 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47522 * 89.99878 * 8 7 6 10 10 O 1.45197 * 109.47332 * 179.97438 * 9 8 7 11 11 C 1.34234 * 116.99835 * 179.97438 * 10 9 8 12 12 O 1.20824 * 119.99711 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99720 * 180.02562 * 11 10 9 14 14 C 1.50700 * 109.46813 * 180.02562 * 13 11 10 15 15 C 1.37640 * 120.13180 * 265.30632 * 14 13 11 16 16 C 1.38613 * 120.24862 * 180.32332 * 15 14 13 17 17 C 1.38655 * 120.50174 * 359.67182 * 16 15 14 18 18 C 1.37598 * 120.24576 * 359.97438 * 17 16 15 19 19 C 1.40702 * 120.12495 * 85.00356 * 14 13 11 20 20 C 1.41393 * 120.24620 * 359.97406 * 19 14 13 21 21 H 1.07999 * 119.99787 * 29.07372 * 20 19 14 22 22 C 1.39938 * 120.00244 * 209.07592 * 20 19 14 23 23 N 1.30823 * 120.00241 * 197.10039 * 22 20 19 24 24 Si 1.86803 * 119.99882 * 17.09514 * 22 20 19 25 25 H 1.48495 * 109.47432 * 270.00073 * 24 22 20 26 26 H 1.48498 * 109.46929 * 30.00589 * 24 22 20 27 27 H 1.48504 * 109.46998 * 150.00206 * 24 22 20 28 28 H 1.09006 * 109.47084 * 270.25180 * 1 2 3 29 29 H 1.08998 * 109.47477 * 30.25410 * 1 2 3 30 30 H 1.08996 * 109.47020 * 150.25532 * 1 2 3 31 31 H 1.08004 * 120.78236 * 359.96852 * 3 2 1 32 32 H 1.07994 * 120.41955 * 179.72922 * 4 3 2 33 33 H 1.07997 * 119.61665 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.47483 * 329.99762 * 8 7 6 35 35 H 1.09001 * 109.47341 * 209.99717 * 8 7 6 36 36 H 1.09002 * 109.46836 * 59.99488 * 9 8 7 37 37 H 1.09001 * 109.46681 * 300.00243 * 9 8 7 38 38 H 1.08999 * 109.47299 * 60.00549 * 13 11 10 39 39 H 1.08998 * 109.47401 * 300.00018 * 13 11 10 40 40 H 1.08005 * 119.87130 * 0.02562 * 15 14 13 41 41 H 1.08001 * 119.74473 * 179.69460 * 16 15 14 42 42 H 1.08002 * 119.87493 * 180.02562 * 17 16 15 43 43 H 1.08003 * 120.12022 * 180.02562 * 18 17 16 44 44 H 0.97004 * 119.99819 * 355.45620 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1476 -0.0052 5 6 4.2255 -0.0822 -0.0049 6 7 3.5255 -1.1996 0.0007 7 6 2.2067 -1.1915 0.0057 8 6 1.4540 -2.4971 0.0114 9 6 1.2048 -2.9360 1.4558 10 8 0.4791 -4.1936 1.4612 11 6 0.1797 -4.7192 2.6596 12 8 0.5126 -4.1471 3.6703 13 6 -0.5716 -6.0228 2.7440 14 6 -0.7795 -6.3898 4.1908 15 6 0.1062 -7.2317 4.8242 16 6 -0.0864 -7.5762 6.1530 17 6 -1.1672 -7.0730 6.8609 18 6 -2.0613 -6.2241 6.2500 19 6 -1.8764 -5.8682 4.9011 20 6 -2.7890 -4.9970 4.2628 21 1 -2.9592 -5.0780 3.1994 22 6 -3.4717 -4.0298 5.0089 23 7 -4.5393 -3.4565 4.5159 24 14 -2.8587 -3.5574 6.7091 25 1 -3.4952 -4.4329 7.7258 26 1 -1.3841 -3.7224 6.7671 27 1 -3.2096 -2.1412 6.9860 28 1 -0.3633 0.0045 1.0277 29 1 -0.3634 0.8877 -0.5178 30 1 -0.3633 -0.8922 -0.5098 31 1 1.6888 2.1424 -0.0005 32 1 4.1735 2.0592 -0.0097 33 1 5.3045 -0.1285 -0.0085 34 1 2.0416 -3.2576 -0.5031 35 1 0.4995 -2.3686 -0.4990 36 1 0.6172 -2.1755 1.9703 37 1 2.1593 -3.0645 1.9662 38 1 0.0027 -6.8059 2.2491 39 1 -1.5393 -5.9169 2.2537 40 1 0.9519 -7.6291 4.2825 41 1 0.6109 -8.2413 6.6406 42 1 -1.3074 -7.3478 7.8960 43 1 -2.9023 -5.8331 6.8035 44 1 -4.8199 -3.6529 3.6083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835579941.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:05 Heat of formation + Delta-G solvation = -48.579006 kcal Electronic energy + Delta-G solvation = -26505.325034 eV Core-core repulsion = 22772.695587 eV Total energy + Delta-G solvation = -3732.629447 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.65245 -39.84077 -37.92976 -36.05912 -34.27294 -33.69991 -33.48360 -32.00825 -30.20385 -30.03436 -27.58061 -27.12787 -24.78268 -24.21068 -22.60153 -21.62442 -21.36746 -20.88870 -19.34361 -18.12579 -17.23674 -17.06060 -16.49942 -16.02945 -15.91567 -15.38225 -15.06274 -14.57381 -14.47009 -14.21549 -13.70380 -13.64733 -13.43777 -13.15801 -13.07676 -12.88458 -12.64644 -12.51436 -12.19050 -12.00474 -11.88662 -11.62519 -11.42533 -11.25389 -11.17514 -10.81584 -10.33782 -10.19870 -10.16482 -9.95961 -9.78810 -9.72116 -9.61834 -9.30142 -9.01882 -8.99385 -7.69584 -7.64903 -7.21521 -4.54269 0.83045 1.03665 2.46474 2.72627 2.96473 3.16761 3.24085 3.42063 3.58724 3.63989 4.06772 4.12722 4.47772 4.55882 4.59449 4.65857 4.76635 5.02836 5.05764 5.13801 5.30509 5.33900 5.39692 5.47592 5.50098 5.63143 5.70429 5.75575 5.79515 5.87257 5.95769 6.03263 6.05129 6.09016 6.17618 6.21782 6.48797 6.50546 6.71895 6.95596 7.03119 7.33376 7.49117 7.63918 7.68611 7.77620 7.82019 7.97421 8.36989 8.47962 8.56407 8.77193 10.04494 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014415 B = 0.003210 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.900333 B = 8719.746571 C = 9677.813697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.126 4.126 3 C -0.077 4.077 4 C -0.172 4.172 5 C 0.093 3.907 6 N -0.476 5.476 7 C 0.131 3.869 8 C -0.072 4.072 9 C 0.077 3.923 10 O -0.367 6.367 11 C 0.463 3.537 12 O -0.488 6.488 13 C -0.040 4.040 14 C -0.185 4.185 15 C -0.063 4.063 16 C -0.246 4.246 17 C -0.073 4.073 18 C -0.243 4.243 19 C 0.116 3.884 20 C -0.515 4.515 21 H 0.077 0.923 22 C 0.047 3.953 23 N -0.820 5.820 24 Si 1.069 2.931 25 H -0.278 1.278 26 H -0.258 1.258 27 H -0.292 1.292 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.156 0.844 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.716 7.131 -10.388 16.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.128 4.128 3 C -0.103 4.103 4 C -0.192 4.192 5 C -0.064 4.064 6 N -0.184 5.184 7 C -0.007 4.007 8 C -0.110 4.110 9 C 0.002 3.998 10 O -0.286 6.286 11 C 0.305 3.695 12 O -0.373 6.373 13 C -0.078 4.078 14 C -0.187 4.187 15 C -0.081 4.081 16 C -0.265 4.265 17 C -0.091 4.091 18 C -0.262 4.262 19 C 0.113 3.887 20 C -0.544 4.544 21 H 0.095 0.905 22 C -0.172 4.172 23 N -0.442 5.442 24 Si 0.895 3.105 25 H -0.205 1.205 26 H -0.183 1.183 27 H -0.220 1.220 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.173 0.827 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.123 0.877 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.851 7.519 -8.856 15.897 hybrid contribution -0.005 0.152 -1.325 1.333 sum 10.846 7.672 -10.181 16.737 Atomic orbital electron populations 1.20905 0.89864 1.03485 1.03458 1.20801 0.97859 0.93497 1.00626 1.21509 0.94185 0.98098 0.96476 1.22143 0.95294 0.99659 1.02129 1.22731 1.00296 0.87598 0.95804 1.67491 1.07649 1.31676 1.11589 1.20817 0.89642 0.94173 0.96059 1.20455 1.00503 0.93267 0.96796 1.22696 0.96547 0.84392 0.96187 1.86466 1.69418 1.37621 1.35080 1.24195 0.77188 0.87575 0.80560 1.90646 1.49280 1.60924 1.36430 1.19962 1.00136 0.90263 0.97424 1.19010 0.98633 1.06997 0.94034 1.20460 0.96470 0.96644 0.94542 1.20344 1.01816 1.09022 0.95300 1.20637 0.94532 0.96381 0.97561 1.21140 1.02286 1.05754 0.97051 1.17515 0.89807 0.90159 0.91169 1.20584 1.21323 1.15114 0.97392 0.90497 1.27160 0.91126 0.92724 1.06158 1.70564 1.16730 1.39687 1.17257 0.83663 0.78505 0.75355 0.72944 1.20479 1.18267 1.21954 0.90206 0.91140 0.90393 0.84718 0.84762 0.82694 0.88853 0.88695 0.91386 0.91260 0.89202 0.87797 0.88931 0.88828 0.88740 0.87664 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.62 36.00 0.35 -0.79 16 2 C -0.13 -1.37 5.90 -104.48 -0.62 -1.98 16 3 C -0.08 -0.71 9.86 -39.27 -0.39 -1.10 16 4 C -0.17 -1.49 10.11 -39.44 -0.40 -1.89 16 5 C 0.09 0.94 11.18 -17.55 -0.20 0.75 16 6 N -0.48 -6.13 10.27 -9.48 -0.10 -6.23 16 7 C 0.13 1.63 6.03 -82.59 -0.50 1.13 16 8 C -0.07 -0.90 5.49 -27.88 -0.15 -1.05 16 9 C 0.08 1.19 5.45 37.16 0.20 1.40 16 10 O -0.37 -6.49 10.22 -39.27 -0.40 -6.89 16 11 C 0.46 9.60 7.95 36.01 0.29 9.88 16 12 O -0.49 -11.86 15.78 -18.75 -0.30 -12.16 16 13 C -0.04 -0.80 5.47 -29.03 -0.16 -0.96 16 14 C -0.19 -4.28 4.43 -103.91 -0.46 -4.74 16 15 C -0.06 -1.35 9.66 -39.66 -0.38 -1.74 16 16 C -0.25 -5.24 10.05 -39.29 -0.39 -5.64 16 17 C -0.07 -1.62 10.02 -39.66 -0.40 -2.02 16 18 C -0.24 -6.01 7.26 -38.87 -0.28 -6.29 16 19 C 0.12 2.98 5.13 -106.83 -0.55 2.43 16 20 C -0.52 -13.66 8.80 -37.75 -0.33 -14.00 16 21 H 0.08 2.04 6.60 -52.49 -0.35 1.69 16 22 C 0.05 1.26 5.42 -17.34 -0.09 1.17 16 23 N -0.82 -22.07 13.65 55.55 0.76 -21.31 16 24 Si 1.07 25.63 24.89 -169.99 -4.23 21.40 16 25 H -0.28 -6.24 6.45 56.52 0.36 -5.88 16 26 H -0.26 -6.46 7.01 56.52 0.40 -6.06 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 30 H 0.08 0.71 5.95 -51.93 -0.31 0.40 16 31 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.03 5.93 -51.93 -0.31 0.72 16 36 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 37 H 0.07 1.14 8.13 -51.93 -0.42 0.71 16 38 H 0.09 1.45 8.06 -51.93 -0.42 1.03 16 39 H 0.10 2.02 6.51 -51.93 -0.34 1.68 16 40 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 41 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 42 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 43 H 0.11 2.57 4.43 -52.48 -0.23 2.34 16 44 H 0.28 7.38 8.73 -40.82 -0.36 7.02 16 LS Contribution 368.44 15.07 5.55 5.55 Total: -1.00 -31.38 368.44 -8.98 -40.35 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.79 Total: 4.71 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -4.47 Total: -25.42 kcal Atomic # 7 Polarization: -28.20 SS G_CDS: 0.66 Total: -27.54 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.70 Total: -19.05 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -4.23 Total: 21.40 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.38 -8.98 -40.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835579941.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.227 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds