Wall clock time and date at job start Tue Mar 31 2020 13:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38680 * 120.41998 * 2 1 4 4 C 1.38628 * 118.42202 * 180.24263 * 3 2 1 5 5 C 1.38221 * 119.15921 * 359.75276 * 4 3 2 6 6 N 1.31855 * 120.76893 * 359.97438 * 5 4 3 7 7 C 1.31883 * 121.72126 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.61492 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47522 * 89.99878 * 8 7 6 10 10 O 1.45197 * 109.47332 * 179.97438 * 9 8 7 11 11 C 1.34234 * 116.99835 * 179.97438 * 10 9 8 12 12 O 1.20824 * 119.99711 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99720 * 180.02562 * 11 10 9 14 14 C 1.50700 * 109.46813 * 180.02562 * 13 11 10 15 15 C 1.37640 * 120.13180 * 265.30632 * 14 13 11 16 16 C 1.38613 * 120.24862 * 180.32332 * 15 14 13 17 17 C 1.38655 * 120.50174 * 359.67182 * 16 15 14 18 18 C 1.37598 * 120.24576 * 359.97438 * 17 16 15 19 19 C 1.40702 * 120.12495 * 85.00356 * 14 13 11 20 20 C 1.41393 * 120.24620 * 359.97406 * 19 14 13 21 21 H 1.07999 * 119.99787 * 29.07372 * 20 19 14 22 22 C 1.39938 * 120.00244 * 209.07592 * 20 19 14 23 23 N 1.30823 * 120.00241 * 197.10039 * 22 20 19 24 24 Si 1.86803 * 119.99882 * 17.09514 * 22 20 19 25 25 H 1.48495 * 109.47432 * 270.00073 * 24 22 20 26 26 H 1.48498 * 109.46929 * 30.00589 * 24 22 20 27 27 H 1.48504 * 109.46998 * 150.00206 * 24 22 20 28 28 H 1.09006 * 109.47084 * 270.25180 * 1 2 3 29 29 H 1.08998 * 109.47477 * 30.25410 * 1 2 3 30 30 H 1.08996 * 109.47020 * 150.25532 * 1 2 3 31 31 H 1.08004 * 120.78236 * 359.96852 * 3 2 1 32 32 H 1.07994 * 120.41955 * 179.72922 * 4 3 2 33 33 H 1.07997 * 119.61665 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.47483 * 329.99762 * 8 7 6 35 35 H 1.09001 * 109.47341 * 209.99717 * 8 7 6 36 36 H 1.09002 * 109.46836 * 59.99488 * 9 8 7 37 37 H 1.09001 * 109.46681 * 300.00243 * 9 8 7 38 38 H 1.08999 * 109.47299 * 60.00549 * 13 11 10 39 39 H 1.08998 * 109.47401 * 300.00018 * 13 11 10 40 40 H 1.08005 * 119.87130 * 0.02562 * 15 14 13 41 41 H 1.08001 * 119.74473 * 179.69460 * 16 15 14 42 42 H 1.08002 * 119.87493 * 180.02562 * 17 16 15 43 43 H 1.08003 * 120.12022 * 180.02562 * 18 17 16 44 44 H 0.97004 * 119.99819 * 355.45620 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1476 -0.0052 5 6 4.2255 -0.0822 -0.0049 6 7 3.5255 -1.1996 0.0007 7 6 2.2067 -1.1915 0.0057 8 6 1.4540 -2.4971 0.0114 9 6 1.2048 -2.9360 1.4558 10 8 0.4791 -4.1936 1.4612 11 6 0.1797 -4.7192 2.6596 12 8 0.5126 -4.1471 3.6703 13 6 -0.5716 -6.0228 2.7440 14 6 -0.7795 -6.3898 4.1908 15 6 0.1062 -7.2317 4.8242 16 6 -0.0864 -7.5762 6.1530 17 6 -1.1672 -7.0730 6.8609 18 6 -2.0613 -6.2241 6.2500 19 6 -1.8764 -5.8682 4.9011 20 6 -2.7890 -4.9970 4.2628 21 1 -2.9592 -5.0780 3.1994 22 6 -3.4717 -4.0298 5.0089 23 7 -4.5393 -3.4565 4.5159 24 14 -2.8587 -3.5574 6.7091 25 1 -3.4952 -4.4329 7.7258 26 1 -1.3841 -3.7224 6.7671 27 1 -3.2096 -2.1412 6.9860 28 1 -0.3633 0.0045 1.0277 29 1 -0.3634 0.8877 -0.5178 30 1 -0.3633 -0.8922 -0.5098 31 1 1.6888 2.1424 -0.0005 32 1 4.1735 2.0592 -0.0097 33 1 5.3045 -0.1285 -0.0085 34 1 2.0416 -3.2576 -0.5031 35 1 0.4995 -2.3686 -0.4990 36 1 0.6172 -2.1755 1.9703 37 1 2.1593 -3.0645 1.9662 38 1 0.0027 -6.8059 2.2491 39 1 -1.5393 -5.9169 2.2537 40 1 0.9519 -7.6291 4.2825 41 1 0.6109 -8.2413 6.6406 42 1 -1.3074 -7.3478 7.8960 43 1 -2.9023 -5.8331 6.8035 44 1 -4.8199 -3.6529 3.6083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835579941.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:04 Heat of formation + Delta-G solvation = -64.829772 kcal Electronic energy + Delta-G solvation = -26506.029720 eV Core-core repulsion = 22772.695587 eV Total energy + Delta-G solvation = -3733.334133 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.65033 -41.25797 -39.67165 -37.62220 -35.62424 -35.20821 -34.32810 -33.68638 -32.04380 -31.05626 -28.96583 -28.16439 -26.53725 -25.41239 -23.46924 -23.28852 -22.59479 -22.28032 -21.05829 -20.04674 -18.72184 -18.06112 -17.55365 -17.45428 -17.22284 -17.00286 -16.31311 -15.97189 -15.82143 -15.56822 -15.38020 -15.03673 -14.53426 -14.31861 -14.15855 -14.03169 -13.91229 -13.76034 -13.71383 -13.51512 -13.12998 -13.07291 -12.86307 -12.74250 -12.63481 -12.22208 -12.18201 -11.98904 -11.62202 -11.57198 -11.45298 -11.17856 -10.87914 -10.71573 -10.45502 -9.82409 -9.59391 -9.41086 -9.18045 -6.52479 0.03857 0.28024 0.71589 0.88510 1.30180 1.32192 1.49575 1.70636 1.78373 2.14438 2.67449 2.75292 3.27436 3.49499 3.65496 3.80153 3.85558 3.90523 3.97275 4.03502 4.07533 4.16255 4.20097 4.30647 4.44960 4.48985 4.52068 4.61820 4.63788 4.66489 4.73959 4.75098 4.83173 4.88230 4.95591 5.15065 5.19873 5.21441 5.30227 5.40130 5.49648 5.59217 5.75300 5.80606 5.86085 6.00394 6.14871 6.45383 6.70256 6.83594 6.87009 6.97612 8.04928 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014415 B = 0.003210 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.900333 B = 8719.746571 C = 9677.813697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.137 4.137 3 C -0.082 4.082 4 C -0.163 4.163 5 C 0.079 3.921 6 N -0.507 5.507 7 C 0.105 3.895 8 C -0.061 4.061 9 C 0.079 3.921 10 O -0.358 6.358 11 C 0.466 3.534 12 O -0.531 6.531 13 C -0.042 4.042 14 C -0.191 4.191 15 C -0.073 4.073 16 C -0.232 4.232 17 C -0.083 4.083 18 C -0.264 4.264 19 C 0.088 3.912 20 C -0.538 4.538 21 H 0.061 0.939 22 C 0.016 3.984 23 N -0.848 5.848 24 Si 1.095 2.905 25 H -0.255 1.255 26 H -0.277 1.277 27 H -0.285 1.285 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.162 0.838 32 H 0.169 0.831 33 H 0.179 0.821 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.132 0.868 39 H 0.102 0.898 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.127 0.873 43 H 0.100 0.900 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.837 6.910 -10.452 17.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.139 4.139 3 C -0.107 4.107 4 C -0.182 4.182 5 C -0.078 4.078 6 N -0.216 5.216 7 C -0.032 4.032 8 C -0.099 4.099 9 C 0.004 3.996 10 O -0.276 6.276 11 C 0.311 3.689 12 O -0.419 6.419 13 C -0.079 4.079 14 C -0.192 4.192 15 C -0.091 4.091 16 C -0.251 4.251 17 C -0.101 4.101 18 C -0.283 4.283 19 C 0.086 3.914 20 C -0.568 4.568 21 H 0.079 0.921 22 C -0.198 4.198 23 N -0.473 5.473 24 Si 0.919 3.081 25 H -0.181 1.181 26 H -0.203 1.203 27 H -0.212 1.212 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.179 0.821 32 H 0.187 0.813 33 H 0.196 0.804 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.150 0.850 39 H 0.120 0.880 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.118 0.882 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.956 7.280 -8.941 17.344 hybrid contribution -0.409 0.122 -1.334 1.401 sum 12.547 7.401 -10.275 17.827 Atomic orbital electron populations 1.20915 0.89333 1.04536 1.02860 1.20997 0.98442 0.93771 1.00678 1.21917 0.94760 0.98539 0.95512 1.22540 0.95341 1.00408 0.99944 1.23252 1.01500 0.87627 0.95470 1.67437 1.08018 1.33413 1.12695 1.20803 0.89927 0.94416 0.98079 1.20372 1.01396 0.93803 0.94323 1.22828 0.95283 0.82979 0.98473 1.86454 1.69202 1.38439 1.33477 1.24355 0.76364 0.87609 0.80619 1.90628 1.51237 1.62132 1.37866 1.20045 1.00664 0.91038 0.96141 1.19429 0.97966 1.06336 0.95485 1.20934 0.97028 0.96022 0.95131 1.20907 1.01299 1.07671 0.95206 1.21049 0.94199 0.95517 0.99292 1.21318 1.03153 1.06852 0.97014 1.17791 0.90759 0.90708 0.92164 1.20548 1.22993 1.16460 0.96792 0.92059 1.27855 0.91144 0.92766 1.08005 1.70602 1.17944 1.41406 1.17339 0.83295 0.76998 0.75963 0.71832 1.18084 1.20298 1.21245 0.91554 0.89000 0.90508 0.82059 0.81336 0.80363 0.88643 0.87415 0.92638 0.92351 0.85022 0.88036 0.85423 0.85134 0.85546 0.88214 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.22 9.62 71.23 0.69 -1.54 16 2 C -0.14 -2.88 5.90 -19.77 -0.12 -3.00 16 3 C -0.08 -1.34 9.86 22.47 0.22 -1.12 16 4 C -0.16 -2.40 10.11 22.36 0.23 -2.18 16 5 C 0.08 1.48 11.18 84.69 0.95 2.42 16 6 N -0.51 -12.87 10.27 -183.89 -1.89 -14.76 16 7 C 0.10 2.60 6.03 42.54 0.26 2.86 16 8 C -0.06 -1.53 5.49 29.85 0.16 -1.37 16 9 C 0.08 2.53 5.45 71.98 0.39 2.92 16 10 O -0.36 -12.74 10.22 -51.46 -0.53 -13.27 16 11 C 0.47 19.44 7.95 71.24 0.57 20.01 16 12 O -0.53 -26.28 15.78 21.97 0.35 -25.93 16 13 C -0.04 -1.61 5.47 29.10 0.16 -1.45 16 14 C -0.19 -8.61 4.43 -19.40 -0.09 -8.70 16 15 C -0.07 -2.92 9.66 22.22 0.21 -2.71 16 16 C -0.23 -9.02 10.05 22.46 0.23 -8.79 16 17 C -0.08 -3.46 10.02 22.22 0.22 -3.24 16 18 C -0.26 -12.90 7.26 22.73 0.16 -12.74 16 19 C 0.09 4.54 5.13 -21.29 -0.11 4.44 16 20 C -0.54 -29.59 8.80 23.46 0.21 -29.39 16 21 H 0.06 3.43 6.60 -2.91 -0.02 3.41 16 22 C 0.02 0.89 5.42 85.26 0.46 1.35 16 23 N -0.85 -47.54 13.65 21.82 0.30 -47.24 16 24 Si 1.10 52.92 24.89 68.60 1.71 54.62 16 25 H -0.26 -11.22 6.45 99.48 0.64 -10.58 16 26 H -0.28 -14.11 7.01 99.48 0.70 -13.42 16 27 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 28 H 0.07 1.40 8.14 -2.38 -0.02 1.39 16 29 H 0.09 1.26 8.10 -2.39 -0.02 1.24 16 30 H 0.08 1.40 5.95 -2.39 -0.01 1.39 16 31 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 32 H 0.17 1.26 8.06 -2.91 -0.02 1.23 16 33 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.11 2.34 5.93 -2.39 -0.01 2.33 16 36 H 0.06 1.91 8.13 -2.39 -0.02 1.89 16 37 H 0.06 1.99 8.13 -2.39 -0.02 1.97 16 38 H 0.13 3.90 8.06 -2.39 -0.02 3.88 16 39 H 0.10 3.99 6.51 -2.39 -0.02 3.98 16 40 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 41 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 42 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 43 H 0.10 4.88 4.43 -2.91 -0.01 4.86 16 44 H 0.28 15.27 8.73 -92.71 -0.81 14.46 16 Total: -1.00 -70.11 368.44 5.64 -64.47 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.90 Total: 24.32 kcal Atomic # 6 Polarization: -47.02 SS G_CDS: 4.80 Total: -42.22 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -1.59 Total: -62.00 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -0.18 Total: -39.19 kcal Atomic # 14 Polarization: 52.92 SS G_CDS: 1.71 Total: 54.62 kcal Total: -70.11 5.64 -64.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835579941.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.363 kcal (2) G-P(sol) polarization free energy of solvation -70.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds