Wall clock time and date at job start Tue Mar 31 2020 15:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47298 * 2 1 4 4 C 1.53004 * 109.47106 * 305.00176 * 3 2 1 5 5 C 1.53003 * 109.47429 * 185.00043 * 3 2 1 6 6 O 1.42900 * 109.47328 * 65.00013 * 3 2 1 7 7 C 1.42894 * 114.00373 * 179.97438 * 6 3 2 8 8 C 1.50699 * 109.47351 * 179.97438 * 7 6 3 9 9 O 1.21296 * 119.99814 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00087 * 180.02562 * 8 7 6 11 11 C 1.40093 * 120.00112 * 185.61151 * 10 8 7 12 12 C 1.38712 * 120.07411 * 34.07260 * 11 10 8 13 13 C 1.38188 * 120.02011 * 179.97438 * 12 11 10 14 14 C 1.38549 * 120.17548 * 0.02562 * 13 12 11 15 15 F 1.35096 * 119.92178 * 179.97438 * 14 13 12 16 16 C 1.38343 * 120.15584 * 0.02562 * 14 13 12 17 17 C 1.38735 * 119.97575 * 359.97438 * 16 14 13 18 18 O 1.35777 * 120.08743 * 180.29716 * 17 16 14 19 19 C 1.34800 * 117.00080 * 354.19171 * 18 17 16 20 20 H 1.08007 * 119.99887 * 354.52311 * 19 18 17 21 21 C 1.38630 * 120.00177 * 174.51703 * 19 18 17 22 22 N 1.31568 * 120.00297 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00299 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47160 * 90.00103 * 23 21 19 25 25 H 1.48497 * 109.47720 * 210.00149 * 23 21 19 26 26 H 1.48500 * 109.47146 * 330.00665 * 23 21 19 27 27 H 1.09003 * 109.46863 * 299.99765 * 1 2 3 28 28 H 1.08998 * 109.47218 * 59.99907 * 1 2 3 29 29 H 1.08998 * 109.47328 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46819 * 239.99912 * 2 1 3 31 31 H 1.08998 * 109.47218 * 120.00093 * 2 1 3 32 32 H 1.09006 * 109.46906 * 179.97438 * 4 3 2 33 33 H 1.08996 * 109.47160 * 299.99569 * 4 3 2 34 34 H 1.09000 * 109.47232 * 60.00372 * 4 3 2 35 35 H 1.09000 * 109.46860 * 300.00232 * 5 3 2 36 36 H 1.09001 * 109.46525 * 60.00001 * 5 3 2 37 37 H 1.08998 * 109.47476 * 179.97438 * 5 3 2 38 38 H 1.09007 * 109.46988 * 60.00180 * 7 6 3 39 39 H 1.08997 * 109.47521 * 300.00589 * 7 6 3 40 40 H 0.97001 * 120.00245 * 5.61242 * 10 8 7 41 41 H 1.07997 * 119.98691 * 359.97298 * 12 11 10 42 42 H 1.07996 * 119.90792 * 180.02562 * 13 12 11 43 43 H 1.08001 * 120.01082 * 180.02562 * 16 14 13 44 44 H 0.97003 * 120.00251 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4300 2.1991 -1.1816 5 6 3.5649 1.4443 -0.1257 6 8 1.6620 2.0814 1.2210 7 6 2.0924 3.4401 1.3236 8 6 1.6413 4.0118 2.6429 9 8 1.0133 3.3232 3.4192 10 7 1.9355 5.2882 2.9602 11 6 1.6202 5.7845 4.2317 12 6 1.6866 4.9517 5.3391 13 6 1.3758 5.4425 6.5929 14 6 0.9968 6.7660 6.7484 15 9 0.6935 7.2404 7.9764 16 6 0.9271 7.6027 5.6488 17 6 1.2377 7.1167 4.3871 18 8 1.1759 7.9374 3.3072 19 6 0.6909 9.1789 3.5091 20 1 0.2911 9.4521 4.4745 21 6 0.7055 10.1049 2.4776 22 7 1.1922 9.7721 1.3014 23 14 0.0341 11.8255 2.7574 24 1 1.1261 12.7113 3.2354 25 1 -0.5124 12.3571 1.4831 26 1 -1.0449 11.7762 3.7765 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.7930 3.2269 -1.1813 33 1 1.7183 1.7118 -2.1130 34 1 0.3436 2.1979 -1.0920 35 1 3.9995 0.9052 0.7161 36 1 3.8532 0.9569 -1.0571 37 1 3.9282 2.4719 -0.1262 38 1 1.6592 4.0209 0.5092 39 1 3.1798 3.4825 1.2616 40 1 2.3656 5.8633 2.3081 41 1 1.9812 3.9194 5.2212 42 1 1.4285 4.7926 7.4538 43 1 0.6317 8.6342 5.7728 44 1 1.2020 10.4200 0.5795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837469843.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:36 Heat of formation + Delta-G solvation = -133.653374 kcal Electronic energy + Delta-G solvation = -27656.346021 eV Core-core repulsion = 23489.258247 eV Total energy + Delta-G solvation = -4167.087773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.27450 -40.21952 -39.31110 -38.31282 -36.33752 -34.32766 -34.04708 -32.44072 -30.42201 -29.68337 -29.12307 -27.65845 -27.09868 -25.52264 -23.66725 -22.50353 -21.66101 -20.12702 -19.86466 -18.37429 -17.95075 -17.13520 -16.82671 -16.12345 -15.96598 -15.41754 -15.28116 -15.08086 -14.90393 -14.47877 -14.31392 -14.02493 -13.86293 -13.69474 -13.52331 -13.39713 -13.25968 -12.92546 -12.39736 -12.29760 -12.18849 -12.13689 -11.93673 -11.78295 -11.66234 -11.40401 -11.32655 -11.00674 -10.89945 -10.74135 -10.56309 -10.52365 -9.84403 -9.69606 -9.64156 -9.33087 -8.98847 -7.92285 -7.14992 -6.63599 -4.21093 1.76285 2.09001 2.89596 2.99297 3.04982 3.06522 3.10901 3.82449 4.03692 4.30190 4.54312 4.62987 4.78190 4.82926 4.92146 4.98590 5.08287 5.10362 5.16537 5.22267 5.30958 5.40939 5.44004 5.46120 5.55643 5.59088 5.72246 5.78280 5.83055 5.92545 5.98558 5.99406 6.13434 6.18867 6.30125 6.48977 6.71918 6.88414 6.89404 7.00224 7.08542 7.18816 7.60670 7.79817 7.87240 8.51945 8.82612 9.43113 10.53502 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011310 B = 0.003411 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.122576 B = 8205.687825 C =10160.482024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.105 4.105 3 C 0.108 3.892 4 C -0.184 4.184 5 C -0.181 4.181 6 O -0.347 6.347 7 C 0.041 3.959 8 C 0.510 3.490 9 O -0.515 6.515 10 N -0.650 5.650 11 C 0.062 3.938 12 C -0.049 4.049 13 C -0.228 4.228 14 C 0.131 3.869 15 F -0.151 7.151 16 C -0.258 4.258 17 C 0.159 3.841 18 O -0.168 6.168 19 C -0.392 4.392 20 H 0.094 0.906 21 C 0.044 3.956 22 N -0.859 5.859 23 Si 0.942 3.058 24 H -0.272 1.272 25 H -0.276 1.276 26 H -0.266 1.266 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.415 0.585 41 H 0.135 0.865 42 H 0.123 0.877 43 H 0.143 0.857 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.016 -12.734 -4.503 14.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C 0.069 3.931 4 C -0.242 4.242 5 C -0.238 4.238 6 O -0.266 6.266 7 C -0.039 4.039 8 C 0.297 3.703 9 O -0.390 6.390 10 N -0.296 5.296 11 C -0.032 4.032 12 C -0.069 4.069 13 C -0.248 4.248 14 C 0.111 3.889 15 F -0.129 7.129 16 C -0.279 4.279 17 C 0.103 3.897 18 O -0.071 6.071 19 C -0.468 4.468 20 H 0.112 0.888 21 C -0.161 4.161 22 N -0.493 5.493 23 Si 0.766 3.234 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.190 1.190 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.251 0.749 41 H 0.153 0.847 42 H 0.141 0.859 43 H 0.161 0.839 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.555 -13.259 -4.296 14.384 hybrid contribution -0.017 1.561 -0.190 1.573 sum 3.538 -11.698 -4.486 13.019 Atomic orbital electron populations 1.21817 0.95169 1.01377 1.02830 1.21469 0.96958 0.93384 1.02439 1.21596 0.93474 0.93513 0.84535 1.22533 1.02575 1.00871 0.98194 1.22459 0.95837 1.02746 1.02799 1.88080 1.77978 1.22801 1.37709 1.22178 1.00121 0.85519 0.96061 1.20250 0.79914 0.81944 0.88223 1.90702 1.37915 1.59160 1.51201 1.43019 1.60232 1.12119 1.14258 1.16796 1.10761 0.90761 0.84857 1.20473 0.97611 0.99173 0.89651 1.20451 1.12137 0.94168 0.98027 1.17449 0.99750 0.92530 0.79171 1.91413 1.90950 1.89079 1.41508 1.20871 1.14243 1.01755 0.91004 1.18810 0.93639 0.89751 0.87478 1.83927 1.71427 1.23635 1.28081 1.21347 1.39556 0.85721 1.00133 0.88828 1.25278 0.96699 0.99672 0.94492 1.70002 1.41852 1.35624 1.01853 0.85681 0.79181 0.80103 0.78391 1.19713 1.20138 1.19025 0.91455 0.92568 0.93027 0.90820 0.91079 0.91990 0.91477 0.91025 0.91561 0.91441 0.91963 0.89824 0.90046 0.74889 0.84696 0.85851 0.83901 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.32 37.16 0.35 -1.18 16 2 C -0.11 -0.98 5.23 -26.73 -0.14 -1.12 16 3 C 0.11 1.12 0.82 -90.62 -0.07 1.04 16 4 C -0.18 -1.73 7.76 37.16 0.29 -1.44 16 5 C -0.18 -1.56 8.25 37.16 0.31 -1.25 16 6 O -0.35 -4.86 9.05 -55.14 -0.50 -5.36 16 7 C 0.04 0.55 5.62 36.01 0.20 0.75 16 8 C 0.51 8.91 7.64 -10.99 -0.08 8.82 16 9 O -0.51 -10.70 14.26 -14.37 -0.20 -10.91 16 10 N -0.65 -11.81 5.20 -9.71 -0.05 -11.87 16 11 C 0.06 1.29 6.28 -83.45 -0.52 0.76 16 12 C -0.05 -0.94 8.65 -39.42 -0.34 -1.28 16 13 C -0.23 -4.24 10.02 -39.49 -0.40 -4.64 16 14 C 0.13 2.61 7.29 -39.43 -0.29 2.33 16 15 F -0.15 -2.88 17.26 2.25 0.04 -2.84 16 16 C -0.26 -5.61 9.11 -39.36 -0.36 -5.97 16 17 C 0.16 3.65 6.66 -38.94 -0.26 3.39 16 18 O -0.17 -4.34 9.30 0.05 0.00 -4.34 16 19 C -0.39 -10.25 9.44 30.88 0.29 -9.96 16 20 H 0.09 2.31 5.30 -52.48 -0.28 2.03 16 21 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 22 N -0.86 -23.12 13.67 55.48 0.76 -22.36 16 23 Si 0.94 19.52 29.55 -169.99 -5.02 14.50 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 26 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 27 H 0.07 0.82 7.82 -51.93 -0.41 0.42 16 28 H 0.06 0.51 6.34 -51.93 -0.33 0.18 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.58 6.54 -51.93 -0.34 0.24 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.72 6.35 -51.93 -0.33 0.39 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.52 6.54 -51.93 -0.34 0.18 16 38 H 0.08 1.01 6.42 -51.93 -0.33 0.68 16 39 H 0.08 0.88 6.42 -51.93 -0.33 0.54 16 40 H 0.41 7.01 8.55 -40.82 -0.35 6.66 16 41 H 0.14 2.51 6.48 -52.49 -0.34 2.17 16 42 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 43 H 0.14 3.10 5.71 -52.49 -0.30 2.80 16 44 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 364.91 15.07 5.50 5.50 Total: -1.00 -30.34 364.91 -6.38 -36.72 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -5.77 Total: 9.66 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -1.13 Total: -8.70 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.71 Total: -34.23 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.70 Total: -20.60 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.04 Total: -2.84 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.34 -6.38 -36.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837469843.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.933 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds