Wall clock time and date at job start Tue Mar 31 2020 15:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47298 * 2 1 4 4 C 1.53004 * 109.47106 * 305.00176 * 3 2 1 5 5 C 1.53003 * 109.47429 * 185.00043 * 3 2 1 6 6 O 1.42900 * 109.47328 * 65.00013 * 3 2 1 7 7 C 1.42894 * 114.00373 * 179.97438 * 6 3 2 8 8 C 1.50699 * 109.47351 * 179.97438 * 7 6 3 9 9 O 1.21296 * 119.99814 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00087 * 180.02562 * 8 7 6 11 11 C 1.40093 * 120.00112 * 185.61151 * 10 8 7 12 12 C 1.38712 * 120.07411 * 34.07260 * 11 10 8 13 13 C 1.38188 * 120.02011 * 179.97438 * 12 11 10 14 14 C 1.38549 * 120.17548 * 0.02562 * 13 12 11 15 15 F 1.35096 * 119.92178 * 179.97438 * 14 13 12 16 16 C 1.38343 * 120.15584 * 0.02562 * 14 13 12 17 17 C 1.38735 * 119.97575 * 359.97438 * 16 14 13 18 18 O 1.35777 * 120.08743 * 180.29716 * 17 16 14 19 19 C 1.34800 * 117.00080 * 354.19171 * 18 17 16 20 20 H 1.08007 * 119.99887 * 354.52311 * 19 18 17 21 21 C 1.38630 * 120.00177 * 174.51703 * 19 18 17 22 22 N 1.31568 * 120.00297 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00299 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47160 * 90.00103 * 23 21 19 25 25 H 1.48497 * 109.47720 * 210.00149 * 23 21 19 26 26 H 1.48500 * 109.47146 * 330.00665 * 23 21 19 27 27 H 1.09003 * 109.46863 * 299.99765 * 1 2 3 28 28 H 1.08998 * 109.47218 * 59.99907 * 1 2 3 29 29 H 1.08998 * 109.47328 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46819 * 239.99912 * 2 1 3 31 31 H 1.08998 * 109.47218 * 120.00093 * 2 1 3 32 32 H 1.09006 * 109.46906 * 179.97438 * 4 3 2 33 33 H 1.08996 * 109.47160 * 299.99569 * 4 3 2 34 34 H 1.09000 * 109.47232 * 60.00372 * 4 3 2 35 35 H 1.09000 * 109.46860 * 300.00232 * 5 3 2 36 36 H 1.09001 * 109.46525 * 60.00001 * 5 3 2 37 37 H 1.08998 * 109.47476 * 179.97438 * 5 3 2 38 38 H 1.09007 * 109.46988 * 60.00180 * 7 6 3 39 39 H 1.08997 * 109.47521 * 300.00589 * 7 6 3 40 40 H 0.97001 * 120.00245 * 5.61242 * 10 8 7 41 41 H 1.07997 * 119.98691 * 359.97298 * 12 11 10 42 42 H 1.07996 * 119.90792 * 180.02562 * 13 12 11 43 43 H 1.08001 * 120.01082 * 180.02562 * 16 14 13 44 44 H 0.97003 * 120.00251 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4300 2.1991 -1.1816 5 6 3.5649 1.4443 -0.1257 6 8 1.6620 2.0814 1.2210 7 6 2.0924 3.4401 1.3236 8 6 1.6413 4.0118 2.6429 9 8 1.0133 3.3232 3.4192 10 7 1.9355 5.2882 2.9602 11 6 1.6202 5.7845 4.2317 12 6 1.6866 4.9517 5.3391 13 6 1.3758 5.4425 6.5929 14 6 0.9968 6.7660 6.7484 15 9 0.6935 7.2404 7.9764 16 6 0.9271 7.6027 5.6488 17 6 1.2377 7.1167 4.3871 18 8 1.1759 7.9374 3.3072 19 6 0.6909 9.1789 3.5091 20 1 0.2911 9.4521 4.4745 21 6 0.7055 10.1049 2.4776 22 7 1.1922 9.7721 1.3014 23 14 0.0341 11.8255 2.7574 24 1 1.1261 12.7113 3.2354 25 1 -0.5124 12.3571 1.4831 26 1 -1.0449 11.7762 3.7765 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.7930 3.2269 -1.1813 33 1 1.7183 1.7118 -2.1130 34 1 0.3436 2.1979 -1.0920 35 1 3.9995 0.9052 0.7161 36 1 3.8532 0.9569 -1.0571 37 1 3.9282 2.4719 -0.1262 38 1 1.6592 4.0209 0.5092 39 1 3.1798 3.4825 1.2616 40 1 2.3656 5.8633 2.3081 41 1 1.9812 3.9194 5.2212 42 1 1.4285 4.7926 7.4538 43 1 0.6317 8.6342 5.7728 44 1 1.2020 10.4200 0.5795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837469843.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:35 Heat of formation + Delta-G solvation = -151.093487 kcal Electronic energy + Delta-G solvation = -27657.102281 eV Core-core repulsion = 23489.258247 eV Total energy + Delta-G solvation = -4167.844034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.85760 -41.69962 -40.55692 -39.68690 -38.01546 -35.62853 -35.18770 -34.32411 -31.27377 -31.16505 -30.65490 -28.56361 -28.24059 -27.37074 -24.55838 -24.04569 -23.24731 -21.55736 -20.74354 -20.16748 -19.57900 -18.51003 -18.25075 -17.32776 -17.13974 -17.00225 -16.69947 -16.58392 -16.19689 -15.98213 -15.60011 -15.42578 -15.26444 -15.05345 -14.99252 -14.57656 -14.26454 -14.08596 -13.99250 -13.77665 -13.42525 -13.08683 -13.03815 -12.87568 -12.66677 -12.64023 -12.54748 -12.35819 -12.15535 -12.13172 -11.70060 -11.68150 -11.35724 -11.19674 -10.86156 -10.77449 -10.55310 -9.60121 -8.81109 -8.52458 -6.18258 0.12793 0.42846 1.37365 1.43739 1.49584 1.52177 1.74249 2.13519 2.62740 2.95722 3.03859 3.13769 3.42047 3.60633 3.84733 3.89791 3.93917 4.07002 4.12494 4.15521 4.22745 4.32665 4.41632 4.59356 4.63208 4.69683 4.71310 4.73497 4.87570 4.92085 4.99981 5.06077 5.13506 5.18351 5.19393 5.26256 5.28748 5.31490 5.36673 5.49647 5.52189 5.91540 5.98073 6.18826 6.45664 6.92209 7.08700 7.59637 8.68052 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011310 B = 0.003411 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.122576 B = 8205.687825 C =10160.482024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.105 4.105 3 C 0.099 3.901 4 C -0.184 4.184 5 C -0.179 4.179 6 O -0.375 6.375 7 C 0.049 3.951 8 C 0.510 3.490 9 O -0.551 6.551 10 N -0.649 5.649 11 C 0.061 3.939 12 C -0.050 4.050 13 C -0.204 4.204 14 C 0.125 3.875 15 F -0.144 7.144 16 C -0.264 4.264 17 C 0.134 3.866 18 O -0.200 6.200 19 C -0.417 4.417 20 H 0.098 0.902 21 C -0.006 4.006 22 N -0.903 5.903 23 Si 1.010 2.990 24 H -0.263 1.263 25 H -0.270 1.270 26 H -0.260 1.260 27 H 0.035 0.965 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.420 0.580 41 H 0.146 0.854 42 H 0.158 0.842 43 H 0.137 0.863 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.619 -13.671 -4.633 15.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.142 4.142 3 C 0.061 3.939 4 C -0.241 4.241 5 C -0.236 4.236 6 O -0.295 6.295 7 C -0.030 4.030 8 C 0.298 3.702 9 O -0.428 6.428 10 N -0.296 5.296 11 C -0.033 4.033 12 C -0.071 4.071 13 C -0.224 4.224 14 C 0.105 3.895 15 F -0.122 7.122 16 C -0.285 4.285 17 C 0.080 3.920 18 O -0.105 6.105 19 C -0.493 4.493 20 H 0.115 0.885 21 C -0.206 4.206 22 N -0.539 5.539 23 Si 0.830 3.170 24 H -0.188 1.188 25 H -0.194 1.194 26 H -0.184 1.184 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.129 0.871 40 H 0.257 0.743 41 H 0.164 0.836 42 H 0.176 0.824 43 H 0.155 0.845 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.173 -14.226 -4.410 15.468 hybrid contribution -0.186 1.612 -0.022 1.623 sum 3.988 -12.614 -4.432 13.952 Atomic orbital electron populations 1.21794 0.95897 1.01799 1.01562 1.21532 0.96310 0.93025 1.03342 1.21890 0.94859 0.93708 0.83447 1.22535 1.01745 1.01003 0.98812 1.22445 0.94222 1.03172 1.03737 1.88053 1.78705 1.22837 1.39867 1.22150 1.01701 0.85649 0.93483 1.21024 0.78747 0.81090 0.89314 1.90672 1.39539 1.59864 1.52728 1.43119 1.60138 1.12659 1.13670 1.17082 1.09581 0.90224 0.86449 1.20680 0.97436 0.99432 0.89515 1.20847 1.08896 0.93762 0.98860 1.17443 1.00163 0.92875 0.78982 1.91431 1.90889 1.89088 1.40811 1.20958 1.14126 1.01953 0.91459 1.19152 0.94783 0.90470 0.87575 1.83900 1.73326 1.23981 1.29336 1.21724 1.40519 0.86307 1.00712 0.88475 1.26350 0.96790 1.03443 0.94049 1.70103 1.43827 1.37153 1.02807 0.84691 0.78742 0.74987 0.78550 1.18775 1.19437 1.18376 0.94608 0.91898 0.91779 0.88082 0.91902 0.92073 0.89252 0.92234 0.92025 0.89321 0.91677 0.88580 0.87120 0.74310 0.83591 0.82392 0.84507 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.32 71.98 0.67 -2.24 16 2 C -0.10 -1.78 5.23 30.59 0.16 -1.62 16 3 C 0.10 1.89 0.82 -10.79 -0.01 1.88 16 4 C -0.18 -3.11 7.76 71.98 0.56 -2.55 16 5 C -0.18 -2.63 8.25 71.98 0.59 -2.03 16 6 O -0.38 -10.24 9.05 -129.94 -1.18 -11.42 16 7 C 0.05 1.27 5.62 71.24 0.40 1.67 16 8 C 0.51 17.69 7.64 87.66 0.67 18.36 16 9 O -0.55 -22.90 14.26 15.96 0.23 -22.68 16 10 N -0.65 -23.76 5.20 -303.03 -1.57 -25.33 16 11 C 0.06 2.54 6.28 38.23 0.24 2.78 16 12 C -0.05 -1.88 8.65 22.37 0.19 -1.69 16 13 C -0.20 -7.14 10.02 22.33 0.22 -6.91 16 14 C 0.13 4.85 7.29 22.37 0.16 5.02 16 15 F -0.14 -5.24 17.26 44.97 0.78 -4.46 16 16 C -0.26 -11.61 9.11 22.41 0.20 -11.40 16 17 C 0.13 6.28 6.66 22.69 0.15 6.43 16 18 O -0.20 -10.75 9.30 -22.74 -0.21 -10.96 16 19 C -0.42 -22.49 9.44 67.91 0.64 -21.85 16 20 H 0.10 4.95 5.30 -2.91 -0.02 4.94 16 21 C -0.01 -0.33 5.49 84.83 0.47 0.14 16 22 N -0.90 -49.89 13.67 21.61 0.30 -49.59 16 23 Si 1.01 40.32 29.55 68.60 2.03 42.34 16 24 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 25 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 26 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 27 H 0.03 0.89 7.82 -2.39 -0.02 0.87 16 28 H 0.06 1.08 6.34 -2.39 -0.02 1.07 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.03 6.54 -2.38 -0.02 1.02 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.14 6.35 -2.39 -0.02 1.13 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 0.91 6.54 -2.39 -0.02 0.90 16 38 H 0.10 2.23 6.42 -2.38 -0.02 2.22 16 39 H 0.11 2.18 6.42 -2.39 -0.02 2.16 16 40 H 0.42 14.46 8.55 -92.71 -0.79 13.66 16 41 H 0.15 5.21 6.48 -2.91 -0.02 5.19 16 42 H 0.16 4.46 8.06 -2.91 -0.02 4.44 16 43 H 0.14 6.08 5.71 -2.91 -0.02 6.07 16 44 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -67.14 364.91 5.95 -61.20 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: 0.26 Total: 34.92 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 5.33 Total: -14.02 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -1.28 Total: -74.92 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -1.16 Total: -45.05 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.78 Total: -4.46 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.34 kcal Total: -67.14 5.95 -61.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837469843.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.895 kcal (2) G-P(sol) polarization free energy of solvation -67.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds