Wall clock time and date at job start Tue Mar 31 2020 14:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 113.99799 * 2 1 4 4 H 1.09002 * 109.46913 * 29.99960 * 3 2 1 5 5 C 1.53001 * 109.46990 * 150.00064 * 3 2 1 6 6 C 1.52994 * 109.46998 * 297.01143 * 5 3 2 7 7 C 1.53001 * 109.47901 * 294.43830 * 6 5 3 8 8 C 1.53004 * 109.47159 * 174.43488 * 6 5 3 9 9 C 1.50695 * 109.46913 * 270.00013 * 3 2 1 10 10 O 1.21297 * 120.00395 * 355.00183 * 9 3 2 11 11 N 1.34773 * 119.99901 * 174.99597 * 9 3 2 12 12 C 1.40096 * 120.00168 * 174.78235 * 11 9 3 13 13 C 1.38708 * 120.07426 * 336.33957 * 12 11 9 14 14 C 1.38186 * 120.02009 * 179.70049 * 13 12 11 15 15 C 1.38558 * 120.17732 * 0.59300 * 14 13 12 16 16 F 1.35094 * 119.92417 * 179.70145 * 15 14 13 17 17 C 1.38348 * 120.14846 * 359.68108 * 15 14 13 18 18 C 1.38738 * 119.97987 * 0.02562 * 17 15 14 19 19 O 1.35769 * 120.08868 * 180.02562 * 18 17 15 20 20 C 1.34809 * 116.99903 * 5.74223 * 19 18 17 21 21 H 1.08005 * 119.99968 * 5.17494 * 20 19 18 22 22 C 1.38633 * 119.99935 * 185.16759 * 20 19 18 23 23 N 1.31576 * 120.00349 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00199 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47260 * 89.99513 * 24 22 20 26 26 H 1.48498 * 109.47273 * 209.99752 * 24 22 20 27 27 H 1.48502 * 109.46782 * 329.99713 * 24 22 20 28 28 H 1.09007 * 109.47378 * 299.99756 * 1 2 3 29 29 H 1.08998 * 109.47457 * 60.00218 * 1 2 3 30 30 H 1.09003 * 109.46670 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46826 * 177.02017 * 5 3 2 32 32 H 1.08996 * 109.47105 * 57.01749 * 5 3 2 33 33 H 1.09001 * 109.47253 * 54.44058 * 6 5 3 34 34 H 1.09006 * 109.46689 * 300.00034 * 7 6 5 35 35 H 1.08997 * 109.47133 * 59.99145 * 7 6 5 36 36 H 1.08998 * 109.47438 * 180.02562 * 7 6 5 37 37 H 1.08998 * 109.47093 * 55.04198 * 8 6 5 38 38 H 1.09000 * 109.47294 * 175.04329 * 8 6 5 39 39 H 1.08999 * 109.46892 * 295.03885 * 8 6 5 40 40 H 0.97000 * 120.00297 * 354.79206 * 11 9 3 41 41 H 1.08001 * 119.99165 * 359.97438 * 13 12 11 42 42 H 1.08002 * 119.91400 * 180.30171 * 14 13 12 43 43 H 1.07999 * 120.00640 * 180.02562 * 17 15 14 44 44 H 0.96996 * 120.00160 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3589 1.2634 0.7212 6 6 3.1429 0.8694 2.1838 7 6 2.3509 1.9676 2.8963 8 6 4.4990 0.6919 2.8697 9 6 2.2145 1.7644 -1.4208 10 8 1.9790 1.0106 -2.3414 11 7 2.6586 3.0125 -1.6686 12 6 2.9528 3.4036 -2.9813 13 6 3.2678 2.4489 -3.9370 14 6 3.5517 2.8355 -5.2329 15 6 3.5350 4.1770 -5.5791 16 9 3.8193 4.5497 -6.8461 17 6 3.2273 5.1357 -4.6303 18 6 2.9353 4.7542 -3.3287 19 8 2.6326 5.6932 -2.3959 20 6 2.5161 6.9661 -2.8242 21 1 2.5793 7.1888 -3.8791 22 6 2.3150 7.9892 -1.9106 23 7 2.2019 9.2317 -2.3284 24 14 2.2062 7.6040 -0.0859 25 1 3.5624 7.6688 0.5155 26 1 1.3226 8.5961 0.5776 27 1 1.6470 6.2409 0.0997 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.8264 2.2469 0.6752 32 1 4.0059 0.5305 0.2392 33 1 2.5873 -0.0672 2.2296 34 1 2.9066 2.9042 2.8505 35 1 1.3849 2.0941 2.4076 36 1 2.1975 1.6870 3.9383 37 1 5.0897 1.5998 2.7474 38 1 4.3466 0.4979 3.9314 39 1 5.0269 -0.1485 2.4190 40 1 2.7748 3.6399 -0.9380 41 1 3.2868 1.4028 -3.6693 42 1 3.7920 2.0903 -5.9768 43 1 3.2145 6.1807 -4.9027 44 1 2.0616 9.9475 -1.6891 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841148483.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:10 Heat of formation + Delta-G solvation = -135.793192 kcal Electronic energy + Delta-G solvation = -28258.620536 eV Core-core repulsion = 24091.439973 eV Total energy + Delta-G solvation = -4167.180563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.31155 -40.59539 -39.22014 -37.81923 -36.41431 -36.06314 -34.26420 -32.55558 -30.81554 -29.61187 -28.37118 -27.40260 -26.44556 -25.52245 -24.62295 -22.51133 -21.61455 -20.29295 -20.08487 -18.44555 -18.12142 -17.40504 -17.17236 -16.48043 -15.77102 -15.58806 -15.32970 -15.09665 -14.82514 -14.74190 -14.40893 -14.17734 -14.04847 -13.85854 -13.71421 -13.48879 -13.32220 -12.75693 -12.59500 -12.47573 -12.37132 -12.28019 -11.94341 -11.87998 -11.61131 -11.51526 -11.15601 -11.01123 -10.86648 -10.82415 -10.71761 -10.52890 -10.44031 -9.91296 -9.76410 -9.11939 -9.03964 -8.02025 -7.25717 -6.58908 -4.26166 1.63893 1.97042 2.71788 3.04317 3.07847 3.11598 3.16979 3.66248 4.03624 4.19456 4.42667 4.52302 4.62395 4.70613 4.79965 4.88848 4.91392 4.94868 5.08710 5.23623 5.34618 5.41911 5.45495 5.48469 5.52077 5.58870 5.65616 5.66452 5.72792 5.76740 5.85647 5.96518 6.02540 6.08648 6.20654 6.35635 6.65033 6.76732 6.83155 6.84432 6.94248 7.40677 7.57826 7.68558 7.82470 8.29605 8.73761 9.27968 10.48304 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009145 B = 0.004841 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.924359 B = 5782.316920 C = 7948.763412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.075 3.925 4 H 0.090 0.910 5 C -0.109 4.109 6 C -0.094 4.094 7 C -0.155 4.155 8 C -0.147 4.147 9 C 0.484 3.516 10 O -0.515 6.515 11 N -0.649 5.649 12 C 0.063 3.937 13 C -0.063 4.063 14 C -0.218 4.218 15 C 0.127 3.873 16 F -0.149 7.149 17 C -0.243 4.243 18 C 0.162 3.838 19 O -0.211 6.211 20 C -0.391 4.391 21 H 0.109 0.891 22 C 0.066 3.934 23 N -0.871 5.871 24 Si 0.904 3.096 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.260 1.260 28 H 0.041 0.959 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.412 0.588 41 H 0.151 0.849 42 H 0.125 0.875 43 H 0.150 0.850 44 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.716 -14.464 9.526 17.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.271 6.271 3 C 0.014 3.986 4 H 0.107 0.893 5 C -0.147 4.147 6 C -0.112 4.112 7 C -0.212 4.212 8 C -0.205 4.205 9 C 0.271 3.729 10 O -0.391 6.391 11 N -0.294 5.294 12 C -0.032 4.032 13 C -0.083 4.083 14 C -0.238 4.238 15 C 0.107 3.893 16 F -0.127 7.127 17 C -0.264 4.264 18 C 0.107 3.893 19 O -0.115 6.115 20 C -0.466 4.466 21 H 0.126 0.874 22 C -0.139 4.139 23 N -0.507 5.507 24 Si 0.729 3.271 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.185 1.185 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.248 0.752 41 H 0.168 0.832 42 H 0.143 0.857 43 H 0.167 0.833 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.570 -14.953 9.195 17.563 hybrid contribution -0.236 0.933 0.621 1.145 sum 0.335 -14.020 9.816 17.118 Atomic orbital electron populations 1.22871 0.80713 1.03095 1.00188 1.87966 1.19978 1.24791 1.94331 1.22104 0.97706 0.87047 0.91778 0.89282 1.21762 0.94157 1.03431 0.95366 1.21067 0.97055 0.99733 0.93350 1.21965 1.00064 0.98834 1.00321 1.21832 0.96528 1.01882 1.00211 1.21440 0.77318 0.81752 0.92437 1.90636 1.49115 1.53886 1.45475 1.43254 1.64223 1.13895 1.08039 1.16959 1.10516 0.89974 0.85710 1.20848 0.96620 0.99743 0.91128 1.20580 1.11927 0.93723 0.97604 1.17485 1.00230 0.92930 0.78668 1.91426 1.91185 1.92452 1.37663 1.20978 1.11782 1.00906 0.92748 1.18441 0.94828 0.87455 0.88536 1.83493 1.77171 1.17455 1.33420 1.20748 1.51161 0.78365 0.96292 0.87394 1.24474 0.95609 0.93651 1.00121 1.69641 1.45933 0.98930 1.36225 0.86215 0.78787 0.79125 0.82936 1.19641 1.20530 1.18453 0.93995 0.93501 0.89276 0.89810 0.90123 0.90134 0.92295 0.92780 0.92486 0.92537 0.92625 0.92580 0.75230 0.83177 0.85689 0.83295 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.81 101.05 1.09 1.38 16 2 O -0.35 -4.52 9.25 -55.09 -0.51 -5.03 16 3 C 0.08 0.92 2.37 -27.89 -0.07 0.85 16 4 H 0.09 0.95 6.09 -51.93 -0.32 0.64 16 5 C -0.11 -1.12 4.36 -26.73 -0.12 -1.24 16 6 C -0.09 -0.82 2.86 -90.62 -0.26 -1.08 16 7 C -0.15 -1.29 8.96 37.16 0.33 -0.95 16 8 C -0.15 -1.15 9.19 37.16 0.34 -0.81 16 9 C 0.48 7.62 6.95 -10.99 -0.08 7.55 16 10 O -0.52 -9.61 13.60 -14.32 -0.19 -9.80 16 11 N -0.65 -10.77 5.22 -9.72 -0.05 -10.82 16 12 C 0.06 1.21 6.47 -83.45 -0.54 0.67 16 13 C -0.06 -1.16 8.73 -39.43 -0.34 -1.51 16 14 C -0.22 -3.92 10.02 -39.48 -0.40 -4.32 16 15 C 0.13 2.49 7.29 -39.42 -0.29 2.20 16 16 F -0.15 -2.84 17.26 2.25 0.04 -2.80 16 17 C -0.24 -5.22 9.11 -39.36 -0.36 -5.58 16 18 C 0.16 3.51 6.66 -38.94 -0.26 3.25 16 19 O -0.21 -4.98 7.98 0.05 0.00 -4.98 16 20 C -0.39 -10.24 9.90 30.88 0.31 -9.93 16 21 H 0.11 2.96 5.52 -52.48 -0.29 2.67 16 22 C 0.07 1.72 5.49 -17.52 -0.10 1.63 16 23 N -0.87 -23.82 13.96 55.48 0.77 -23.05 16 24 Si 0.90 19.53 28.62 -169.99 -4.86 14.67 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 27 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 28 H 0.04 0.35 8.09 -51.93 -0.42 -0.06 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.81 8.01 -51.93 -0.42 0.39 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.75 7.61 -51.93 -0.40 0.35 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.45 6.52 -51.93 -0.34 0.11 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.41 6.28 8.23 -40.82 -0.34 5.94 16 41 H 0.15 2.71 5.69 -52.49 -0.30 2.41 16 42 H 0.13 1.94 8.06 -52.49 -0.42 1.51 16 43 H 0.15 3.35 5.71 -52.49 -0.30 3.05 16 44 H 0.28 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 369.38 15.07 5.57 5.57 Total: -1.00 -29.16 369.38 -6.02 -35.18 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -6.05 Total: 8.96 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -0.73 Total: -7.89 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.72 Total: -33.87 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.70 Total: -19.81 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.86 Total: 14.67 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.16 -6.02 -35.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841148483.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.614 kcal (2) G-P(sol) polarization free energy of solvation -29.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds