Wall clock time and date at job start Tue Mar 31 2020 14:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 113.99799 * 2 1 4 4 H 1.09002 * 109.46913 * 29.99960 * 3 2 1 5 5 C 1.53001 * 109.46990 * 150.00064 * 3 2 1 6 6 C 1.52994 * 109.46998 * 297.01143 * 5 3 2 7 7 C 1.53001 * 109.47901 * 294.43830 * 6 5 3 8 8 C 1.53004 * 109.47159 * 174.43488 * 6 5 3 9 9 C 1.50695 * 109.46913 * 270.00013 * 3 2 1 10 10 O 1.21297 * 120.00395 * 355.00183 * 9 3 2 11 11 N 1.34773 * 119.99901 * 174.99597 * 9 3 2 12 12 C 1.40096 * 120.00168 * 174.78235 * 11 9 3 13 13 C 1.38708 * 120.07426 * 336.33957 * 12 11 9 14 14 C 1.38186 * 120.02009 * 179.70049 * 13 12 11 15 15 C 1.38558 * 120.17732 * 0.59300 * 14 13 12 16 16 F 1.35094 * 119.92417 * 179.70145 * 15 14 13 17 17 C 1.38348 * 120.14846 * 359.68108 * 15 14 13 18 18 C 1.38738 * 119.97987 * 0.02562 * 17 15 14 19 19 O 1.35769 * 120.08868 * 180.02562 * 18 17 15 20 20 C 1.34809 * 116.99903 * 5.74223 * 19 18 17 21 21 H 1.08005 * 119.99968 * 5.17494 * 20 19 18 22 22 C 1.38633 * 119.99935 * 185.16759 * 20 19 18 23 23 N 1.31576 * 120.00349 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00199 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47260 * 89.99513 * 24 22 20 26 26 H 1.48498 * 109.47273 * 209.99752 * 24 22 20 27 27 H 1.48502 * 109.46782 * 329.99713 * 24 22 20 28 28 H 1.09007 * 109.47378 * 299.99756 * 1 2 3 29 29 H 1.08998 * 109.47457 * 60.00218 * 1 2 3 30 30 H 1.09003 * 109.46670 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46826 * 177.02017 * 5 3 2 32 32 H 1.08996 * 109.47105 * 57.01749 * 5 3 2 33 33 H 1.09001 * 109.47253 * 54.44058 * 6 5 3 34 34 H 1.09006 * 109.46689 * 300.00034 * 7 6 5 35 35 H 1.08997 * 109.47133 * 59.99145 * 7 6 5 36 36 H 1.08998 * 109.47438 * 180.02562 * 7 6 5 37 37 H 1.08998 * 109.47093 * 55.04198 * 8 6 5 38 38 H 1.09000 * 109.47294 * 175.04329 * 8 6 5 39 39 H 1.08999 * 109.46892 * 295.03885 * 8 6 5 40 40 H 0.97000 * 120.00297 * 354.79206 * 11 9 3 41 41 H 1.08001 * 119.99165 * 359.97438 * 13 12 11 42 42 H 1.08002 * 119.91400 * 180.30171 * 14 13 12 43 43 H 1.07999 * 120.00640 * 180.02562 * 17 15 14 44 44 H 0.96996 * 120.00160 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3589 1.2634 0.7212 6 6 3.1429 0.8694 2.1838 7 6 2.3509 1.9676 2.8963 8 6 4.4990 0.6919 2.8697 9 6 2.2145 1.7644 -1.4208 10 8 1.9790 1.0106 -2.3414 11 7 2.6586 3.0125 -1.6686 12 6 2.9528 3.4036 -2.9813 13 6 3.2678 2.4489 -3.9370 14 6 3.5517 2.8355 -5.2329 15 6 3.5350 4.1770 -5.5791 16 9 3.8193 4.5497 -6.8461 17 6 3.2273 5.1357 -4.6303 18 6 2.9353 4.7542 -3.3287 19 8 2.6326 5.6932 -2.3959 20 6 2.5161 6.9661 -2.8242 21 1 2.5793 7.1888 -3.8791 22 6 2.3150 7.9892 -1.9106 23 7 2.2019 9.2317 -2.3284 24 14 2.2062 7.6040 -0.0859 25 1 3.5624 7.6688 0.5155 26 1 1.3226 8.5961 0.5776 27 1 1.6470 6.2409 0.0997 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.8264 2.2469 0.6752 32 1 4.0059 0.5305 0.2392 33 1 2.5873 -0.0672 2.2296 34 1 2.9066 2.9042 2.8505 35 1 1.3849 2.0941 2.4076 36 1 2.1975 1.6870 3.9383 37 1 5.0897 1.5998 2.7474 38 1 4.3466 0.4979 3.9314 39 1 5.0269 -0.1485 2.4190 40 1 2.7748 3.6399 -0.9380 41 1 3.2868 1.4028 -3.6693 42 1 3.7920 2.0903 -5.9768 43 1 3.2145 6.1807 -4.9027 44 1 2.0616 9.9475 -1.6891 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841148483.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:09 Heat of formation + Delta-G solvation = -152.093989 kcal Electronic energy + Delta-G solvation = -28259.327391 eV Core-core repulsion = 24091.439973 eV Total energy + Delta-G solvation = -4167.887419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.88607 -41.95958 -40.68576 -39.01664 -37.95154 -36.85747 -35.66035 -34.48638 -31.86617 -31.21171 -29.78593 -28.00580 -27.40560 -27.23904 -25.67063 -24.05907 -23.17269 -21.50774 -20.88134 -20.19921 -19.75398 -18.71425 -18.51397 -17.60714 -17.20724 -16.94114 -16.67458 -16.64242 -16.00856 -15.93474 -15.73362 -15.54886 -15.46404 -15.26170 -15.02024 -14.72753 -14.45388 -14.25764 -13.90255 -13.63508 -13.56125 -13.28987 -13.15380 -12.98351 -12.66071 -12.62910 -12.44337 -12.29824 -12.17369 -11.89028 -11.67801 -11.53053 -11.48880 -11.43885 -11.32373 -10.94368 -10.31258 -9.66683 -8.84184 -8.52454 -6.27271 0.07022 0.35162 1.33986 1.38819 1.42751 1.52129 1.85112 2.26344 2.56169 2.73140 2.78831 2.96680 3.33875 3.42635 3.78047 3.84474 3.87794 4.06370 4.10248 4.15675 4.23349 4.37357 4.48609 4.51307 4.54527 4.71399 4.80226 4.81774 4.84295 4.89186 4.99225 5.06021 5.08175 5.12689 5.13423 5.25068 5.34005 5.38477 5.47094 5.55274 5.56270 5.78479 5.94351 6.04259 6.37467 6.78633 6.99254 7.39538 8.58373 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009145 B = 0.004841 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.924359 B = 5782.316920 C = 7948.763412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.367 6.367 3 C 0.082 3.918 4 H 0.109 0.891 5 C -0.108 4.108 6 C -0.088 4.088 7 C -0.156 4.156 8 C -0.146 4.146 9 C 0.485 3.515 10 O -0.544 6.544 11 N -0.647 5.647 12 C 0.075 3.925 13 C -0.065 4.065 14 C -0.192 4.192 15 C 0.116 3.884 16 F -0.146 7.146 17 C -0.254 4.254 18 C 0.139 3.861 19 O -0.219 6.219 20 C -0.402 4.402 21 H 0.077 0.923 22 C 0.013 3.987 23 N -0.919 5.919 24 Si 0.968 3.032 25 H -0.261 1.261 26 H -0.274 1.274 27 H -0.242 1.242 28 H 0.064 0.936 29 H 0.028 0.972 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.420 0.580 41 H 0.162 0.838 42 H 0.159 0.841 43 H 0.128 0.872 44 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.763 -16.914 11.587 20.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.284 6.284 3 C 0.021 3.979 4 H 0.127 0.873 5 C -0.145 4.145 6 C -0.106 4.106 7 C -0.213 4.213 8 C -0.204 4.204 9 C 0.274 3.726 10 O -0.422 6.422 11 N -0.293 5.293 12 C -0.021 4.021 13 C -0.085 4.085 14 C -0.211 4.211 15 C 0.097 3.903 16 F -0.125 7.125 17 C -0.275 4.275 18 C 0.086 3.914 19 O -0.125 6.125 20 C -0.478 4.478 21 H 0.095 0.905 22 C -0.187 4.187 23 N -0.558 5.558 24 Si 0.789 3.211 25 H -0.186 1.186 26 H -0.199 1.199 27 H -0.166 1.166 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.257 0.743 41 H 0.179 0.821 42 H 0.177 0.823 43 H 0.145 0.855 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.624 -17.444 11.250 20.766 hybrid contribution -0.228 1.475 -0.208 1.507 sum 0.396 -15.969 11.042 19.419 Atomic orbital electron populations 1.23044 0.79605 1.04355 1.00396 1.87963 1.21280 1.25039 1.94131 1.22196 0.99182 0.87314 0.89247 0.87339 1.21805 0.92881 1.03715 0.96141 1.21015 0.97619 0.99719 0.92274 1.21986 0.99905 0.98577 1.00867 1.21826 0.95966 1.01892 1.00694 1.22225 0.75802 0.80750 0.93837 1.90611 1.50234 1.54481 1.46839 1.43354 1.64264 1.14598 1.07124 1.17120 1.08664 0.89006 0.87267 1.21067 0.96321 0.99996 0.91097 1.20957 1.08659 0.93407 0.98099 1.17516 1.00988 0.93314 0.78530 1.91431 1.91194 1.92538 1.37307 1.20985 1.12378 1.00508 0.93618 1.18721 0.95980 0.88169 0.88492 1.83438 1.79197 1.16441 1.33467 1.20610 1.51999 0.79881 0.95306 0.90513 1.25365 0.95027 0.93193 1.05090 1.69743 1.47967 1.00083 1.38019 0.85256 0.79377 0.79814 0.76671 1.18552 1.19924 1.16554 0.91702 0.95279 0.87676 0.89107 0.90831 0.90492 0.92299 0.92751 0.91533 0.92502 0.91693 0.92666 0.74315 0.82061 0.82314 0.85460 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.81 113.37 1.23 1.63 16 2 O -0.37 -8.52 9.25 -129.99 -1.20 -9.72 16 3 C 0.08 1.79 2.37 29.85 0.07 1.86 16 4 H 0.11 1.98 6.09 -2.39 -0.01 1.96 16 5 C -0.11 -1.95 4.36 30.59 0.13 -1.81 16 6 C -0.09 -1.30 2.86 -10.79 -0.03 -1.33 16 7 C -0.16 -2.11 8.96 71.98 0.65 -1.46 16 8 C -0.15 -1.92 9.19 71.98 0.66 -1.26 16 9 C 0.49 14.33 6.95 87.66 0.61 14.94 16 10 O -0.54 -19.32 13.60 15.91 0.22 -19.10 16 11 N -0.65 -20.38 5.22 -303.04 -1.58 -21.96 16 12 C 0.07 2.80 6.47 38.23 0.25 3.05 16 13 C -0.06 -2.24 8.73 22.37 0.20 -2.05 16 14 C -0.19 -6.43 10.02 22.33 0.22 -6.21 16 15 C 0.12 4.50 7.29 22.37 0.16 4.66 16 16 F -0.15 -5.49 17.26 44.97 0.78 -4.72 16 17 C -0.25 -11.20 9.11 22.42 0.20 -11.00 16 18 C 0.14 6.06 6.66 22.69 0.15 6.22 16 19 O -0.22 -10.49 7.98 -22.74 -0.18 -10.67 16 20 C -0.40 -21.95 9.90 67.91 0.67 -21.28 16 21 H 0.08 4.53 5.52 -2.91 -0.02 4.52 16 22 C 0.01 0.68 5.49 84.83 0.47 1.14 16 23 N -0.92 -52.14 13.96 21.61 0.30 -51.84 16 24 Si 0.97 39.85 28.62 68.60 1.96 41.81 16 25 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 26 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 27 H -0.24 -9.13 7.11 99.48 0.71 -8.42 16 28 H 0.06 0.90 8.09 -2.38 -0.02 0.88 16 29 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.09 1.51 8.01 -2.39 -0.02 1.49 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 1.21 7.61 -2.39 -0.02 1.20 16 34 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.05 0.72 6.52 -2.39 -0.02 0.71 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 38 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.42 11.95 8.23 -92.71 -0.76 11.18 16 41 H 0.16 5.40 5.69 -2.91 -0.02 5.39 16 42 H 0.16 4.29 8.06 -2.91 -0.02 4.27 16 43 H 0.13 6.15 5.71 -2.91 -0.02 6.13 16 44 H 0.29 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -64.32 369.38 6.20 -58.12 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: 0.27 Total: 30.97 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 5.64 Total: -12.89 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -1.28 Total: -73.80 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -1.17 Total: -39.50 kcal Atomic # 9 Polarization: -5.49 SS G_CDS: 0.78 Total: -4.72 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 1.96 Total: 41.81 kcal Total: -64.32 6.20 -58.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841148483.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.976 kcal (2) G-P(sol) polarization free energy of solvation -64.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds