Wall clock time and date at job start Tue Mar 31 2020 14:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00307 * 2 1 4 4 H 1.08996 * 109.47233 * 18.23374 * 3 2 1 5 5 C 1.53002 * 109.47079 * 258.23328 * 3 2 1 6 6 C 1.52998 * 109.47326 * 62.71983 * 5 3 2 7 7 C 1.53001 * 109.47237 * 185.59997 * 6 5 3 8 8 C 1.53005 * 109.46854 * 65.59966 * 6 5 3 9 9 C 1.50702 * 109.47223 * 138.23276 * 3 2 1 10 10 O 1.21290 * 119.99963 * 4.99958 * 9 3 2 11 11 N 1.34773 * 119.99841 * 184.99924 * 9 3 2 12 12 C 1.40093 * 120.00081 * 184.17634 * 11 9 3 13 13 C 1.38712 * 120.07472 * 333.30301 * 12 11 9 14 14 C 1.38191 * 120.01887 * 179.69325 * 13 12 11 15 15 C 1.38554 * 120.17363 * 0.59943 * 14 13 12 16 16 F 1.35099 * 119.92280 * 179.69808 * 15 14 13 17 17 C 1.38343 * 120.15652 * 359.67662 * 15 14 13 18 18 C 1.38746 * 119.97680 * 0.02562 * 17 15 14 19 19 O 1.35770 * 120.08717 * 179.97438 * 18 17 15 20 20 C 1.34809 * 117.00205 * 5.67073 * 19 18 17 21 21 H 1.07997 * 119.99642 * 5.07640 * 20 19 18 22 22 C 1.38635 * 119.99868 * 185.07351 * 20 19 18 23 23 N 1.31567 * 120.00320 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99937 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46766 * 60.00394 * 24 22 20 26 26 H 1.48493 * 109.47482 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47147 * 300.00515 * 24 22 20 28 28 H 1.08995 * 109.47504 * 174.70738 * 1 2 3 29 29 H 1.08998 * 109.46923 * 294.71001 * 1 2 3 30 30 H 1.08997 * 109.46797 * 54.70666 * 1 2 3 31 31 H 1.09004 * 109.46922 * 302.72035 * 5 3 2 32 32 H 1.09002 * 109.46947 * 182.72383 * 5 3 2 33 33 H 1.09001 * 109.47042 * 305.60264 * 6 5 3 34 34 H 1.09001 * 109.46827 * 300.00279 * 7 6 5 35 35 H 1.08994 * 109.46765 * 59.99983 * 7 6 5 36 36 H 1.09002 * 109.47062 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.47098 * 180.02562 * 8 6 5 38 38 H 1.08995 * 109.46934 * 300.00015 * 8 6 5 39 39 H 1.09001 * 109.47053 * 60.00305 * 8 6 5 40 40 H 0.96999 * 120.00211 * 4.18331 * 11 9 3 41 41 H 1.08000 * 119.98918 * 359.97287 * 13 12 11 42 42 H 1.07993 * 119.91327 * 180.29770 * 14 13 12 43 43 H 1.08000 * 120.01187 * 180.02562 * 17 15 14 44 44 H 0.97005 * 120.00399 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2664 2.0343 0.3215 5 6 2.4864 1.6516 -1.4122 6 6 1.2861 1.6899 -2.3602 7 6 1.7756 1.8976 -3.7948 8 6 0.3608 2.8426 -1.9650 9 6 3.1827 1.3332 0.9464 10 8 3.5466 0.3125 1.4913 11 7 3.8269 2.4923 1.1873 12 6 4.9695 2.5033 1.9977 13 6 5.1407 1.5301 2.9712 14 6 6.2714 1.5384 3.7657 15 6 7.2307 2.5245 3.6015 16 9 8.3312 2.5312 4.3852 17 6 7.0646 3.5019 2.6367 18 6 5.9349 3.4961 1.8313 19 8 5.7693 4.4546 0.8841 20 6 6.7917 5.3131 0.6968 21 1 7.7208 5.1704 1.2285 22 6 6.6503 6.3791 -0.1782 23 7 5.5182 6.5532 -0.8255 24 14 8.0667 7.5692 -0.4371 25 1 9.2446 6.8306 -0.9589 26 1 7.6641 8.6130 -1.4135 27 1 8.4172 8.2102 0.8557 28 1 -0.3634 -1.0232 -0.0948 29 1 -0.3633 0.4296 0.9336 30 1 -0.3633 0.5937 -0.8388 31 1 3.1942 0.8957 -1.7525 32 1 2.9731 2.6269 -1.4026 33 1 0.7414 0.7480 -2.2949 34 1 2.3203 2.8395 -3.8600 35 1 2.4348 1.0765 -4.0762 36 1 0.9204 1.9253 -4.4701 37 1 -0.4946 2.8696 -2.6401 38 1 0.0121 2.6945 -0.9430 39 1 0.9055 3.7845 -2.0303 40 1 3.4993 3.3189 0.7996 41 1 4.3923 0.7631 3.1052 42 1 6.4052 0.7770 4.5199 43 1 7.8141 4.2692 2.5104 44 1 5.4191 7.2993 -1.4375 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841148484.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:14 Heat of formation + Delta-G solvation = -134.496369 kcal Electronic energy + Delta-G solvation = -28238.951872 eV Core-core repulsion = 24071.827543 eV Total energy + Delta-G solvation = -4167.124328 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.25542 -40.41012 -39.08849 -37.88011 -36.24439 -35.67178 -34.09022 -32.43548 -30.74177 -29.37813 -28.13305 -27.39668 -26.42843 -25.54956 -24.36809 -22.42464 -21.56715 -20.15431 -20.00111 -18.38974 -18.01907 -17.19697 -17.01069 -16.37963 -15.79063 -15.25470 -15.22105 -15.06919 -14.81390 -14.47454 -14.35502 -14.18586 -13.84465 -13.61630 -13.60447 -13.45489 -13.17072 -12.88831 -12.44148 -12.32336 -12.21050 -12.20000 -11.77317 -11.68167 -11.42197 -11.36256 -11.04964 -10.99580 -10.87090 -10.71477 -10.58041 -10.53017 -9.93248 -9.84463 -9.67518 -9.05642 -8.96151 -7.90676 -7.11080 -6.63474 -4.20724 1.78167 2.10548 2.83005 3.05977 3.06245 3.08621 3.12507 3.82445 4.01683 4.31474 4.63328 4.74576 4.80663 4.84828 4.91269 4.92921 5.03432 5.09625 5.18808 5.26989 5.37790 5.51881 5.58286 5.60313 5.62670 5.70035 5.73940 5.80965 5.89641 5.94572 6.01557 6.15446 6.18707 6.24546 6.35300 6.55268 6.71210 6.89139 6.94874 6.97056 7.04271 7.17032 7.63996 7.80027 7.87371 8.48111 8.82791 9.42890 10.53503 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009330 B = 0.004637 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3000.466115 B = 6037.446767 C = 8714.899196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.355 6.355 3 C 0.077 3.923 4 H 0.089 0.911 5 C -0.131 4.131 6 C -0.097 4.097 7 C -0.147 4.147 8 C -0.156 4.156 9 C 0.504 3.496 10 O -0.516 6.516 11 N -0.644 5.644 12 C 0.061 3.939 13 C -0.063 4.063 14 C -0.227 4.227 15 C 0.128 3.872 16 F -0.152 7.152 17 C -0.258 4.258 18 C 0.156 3.844 19 O -0.169 6.169 20 C -0.392 4.392 21 H 0.093 0.907 22 C 0.045 3.955 23 N -0.859 5.859 24 Si 0.941 3.059 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.269 1.269 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.416 0.584 41 H 0.153 0.847 42 H 0.123 0.877 43 H 0.143 0.857 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.853 -5.948 -1.728 11.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.273 6.273 3 C 0.016 3.984 4 H 0.107 0.893 5 C -0.169 4.169 6 C -0.115 4.115 7 C -0.204 4.204 8 C -0.213 4.213 9 C 0.291 3.709 10 O -0.392 6.392 11 N -0.289 5.289 12 C -0.033 4.033 13 C -0.083 4.083 14 C -0.248 4.248 15 C 0.108 3.892 16 F -0.130 7.130 17 C -0.279 4.279 18 C 0.101 3.899 19 O -0.073 6.073 20 C -0.467 4.467 21 H 0.111 0.889 22 C -0.161 4.161 23 N -0.494 5.494 24 Si 0.765 3.235 25 H -0.194 1.194 26 H -0.202 1.202 27 H -0.194 1.194 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.253 0.747 41 H 0.171 0.829 42 H 0.141 0.859 43 H 0.161 0.839 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.778 -6.624 -1.706 11.933 hybrid contribution 0.704 1.339 -0.145 1.520 sum -9.074 -5.284 -1.852 10.662 Atomic orbital electron populations 1.23037 0.81150 1.03065 1.00286 1.88024 1.19279 1.25183 1.94769 1.21970 0.94374 0.86941 0.95156 0.89282 1.22114 0.98743 1.03588 0.92445 1.21150 0.95979 0.99191 0.95215 1.21818 1.00994 1.02299 0.95305 1.22008 0.99478 0.99013 1.00844 1.20592 0.84595 0.83278 0.82454 1.90603 1.65627 1.33235 1.49705 1.43096 1.26546 1.10499 1.48796 1.16935 0.89299 0.99441 0.97669 1.21007 0.97803 0.97756 0.91729 1.20534 0.96517 1.01841 1.05859 1.17492 0.83847 0.96614 0.91266 1.91410 1.52064 1.96393 1.73169 1.20846 1.02410 1.03556 1.01056 1.18754 0.91483 0.90299 0.89402 1.83904 1.41182 1.36220 1.45947 1.21282 0.92217 1.06275 1.26960 0.88921 1.25254 0.98336 0.96959 0.95512 1.69986 1.24286 1.29803 1.25284 0.85765 0.79691 0.79219 0.78787 1.19358 1.20176 1.19359 0.89430 0.94037 0.93112 0.90317 0.89393 0.90695 0.92148 0.92622 0.92821 0.92599 0.92933 0.91705 0.74747 0.82941 0.85918 0.83943 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.21 101.05 1.03 1.24 16 2 O -0.36 -4.99 9.55 -55.09 -0.53 -5.52 16 3 C 0.08 1.05 2.53 -27.88 -0.07 0.98 16 4 H 0.09 1.01 6.01 -51.93 -0.31 0.70 16 5 C -0.13 -1.69 4.36 -26.73 -0.12 -1.81 16 6 C -0.10 -1.01 2.40 -90.62 -0.22 -1.23 16 7 C -0.15 -1.50 9.19 37.16 0.34 -1.16 16 8 C -0.16 -1.47 8.44 37.16 0.31 -1.16 16 9 C 0.50 8.78 7.06 -10.99 -0.08 8.70 16 10 O -0.52 -10.49 13.48 -14.31 -0.19 -10.68 16 11 N -0.64 -11.71 5.20 -9.72 -0.05 -11.77 16 12 C 0.06 1.26 6.46 -83.45 -0.54 0.72 16 13 C -0.06 -1.23 8.78 -39.42 -0.35 -1.58 16 14 C -0.23 -4.29 10.02 -39.48 -0.40 -4.68 16 15 C 0.13 2.57 7.29 -39.43 -0.29 2.28 16 16 F -0.15 -2.92 17.26 2.25 0.04 -2.88 16 17 C -0.26 -5.61 9.11 -39.36 -0.36 -5.97 16 18 C 0.16 3.57 6.66 -38.93 -0.26 3.31 16 19 O -0.17 -4.32 9.19 0.05 0.00 -4.31 16 20 C -0.39 -10.13 9.44 30.88 0.29 -9.84 16 21 H 0.09 2.27 5.29 -52.49 -0.28 1.99 16 22 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 23 N -0.86 -22.77 13.67 55.48 0.76 -22.01 16 24 Si 0.94 19.37 29.55 -169.99 -5.02 14.35 16 25 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 26 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 27 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.41 4.85 -51.93 -0.25 0.16 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.09 1.21 7.98 -51.93 -0.41 0.80 16 33 H 0.07 0.76 5.91 -51.93 -0.31 0.45 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.45 5.83 -51.93 -0.30 0.15 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.42 7.18 8.26 -40.82 -0.34 6.84 16 41 H 0.15 2.95 5.60 -52.49 -0.29 2.66 16 42 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 43 H 0.14 3.09 5.71 -52.49 -0.30 2.79 16 44 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 363.63 15.07 5.48 5.48 Total: -1.00 -29.54 363.63 -6.04 -35.58 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -5.74 Total: 10.92 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -0.79 Total: -9.16 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.71 Total: -33.77 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.72 Total: -20.51 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.54 -6.04 -35.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841148484.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.916 kcal (2) G-P(sol) polarization free energy of solvation -29.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds