Wall clock time and date at job start Tue Mar 31 2020 14:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38216 * 120.42456 * 2 1 4 4 N 1.31853 * 120.76973 * 179.97438 * 3 2 1 5 5 C 1.31886 * 121.72090 * 0.02562 * 4 3 2 6 6 C 1.38181 * 120.76813 * 359.97438 * 5 4 3 7 7 C 1.38632 * 120.41630 * 179.97438 * 2 1 3 8 8 C 1.50706 * 120.79032 * 0.04249 * 7 2 1 9 9 C 1.53000 * 109.46809 * 84.97901 * 8 7 2 10 10 O 1.45196 * 109.46843 * 179.97438 * 9 8 7 11 11 C 1.34233 * 116.99837 * 179.97438 * 10 9 8 12 12 O 1.20821 * 120.00273 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.99869 * 180.02562 * 11 10 9 14 14 C 1.50702 * 109.46932 * 180.02562 * 13 11 10 15 15 C 1.37636 * 120.12653 * 264.99725 * 14 13 11 16 16 C 1.38614 * 120.24864 * 179.97438 * 15 14 13 17 17 C 1.38652 * 120.50043 * 0.02562 * 16 15 14 18 18 C 1.37603 * 120.24826 * 0.02562 * 17 16 15 19 19 C 1.40698 * 120.12572 * 84.72749 * 14 13 11 20 20 C 1.41395 * 120.24612 * 359.97438 * 19 14 13 21 21 H 1.07995 * 119.99801 * 329.70031 * 20 19 14 22 22 C 1.39948 * 119.99873 * 149.70342 * 20 19 14 23 23 N 1.30824 * 119.99817 * 162.01085 * 22 20 19 24 24 Si 1.86799 * 119.99907 * 342.01717 * 22 20 19 25 25 H 1.48497 * 109.47429 * 95.40093 * 24 22 20 26 26 H 1.48501 * 109.46938 * 215.40203 * 24 22 20 27 27 H 1.48498 * 109.46998 * 335.39739 * 24 22 20 28 28 H 1.08997 * 109.47516 * 270.02631 * 1 2 3 29 29 H 1.09011 * 109.46749 * 30.02202 * 1 2 3 30 30 H 1.08999 * 109.47502 * 150.01740 * 1 2 3 31 31 H 1.08001 * 119.61770 * 0.02562 * 3 2 1 32 32 H 1.08007 * 119.61735 * 179.97438 * 5 4 3 33 33 H 1.08003 * 120.41856 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.47130 * 204.98109 * 8 7 2 35 35 H 1.08999 * 109.46796 * 324.98348 * 8 7 2 36 36 H 1.08999 * 109.46975 * 300.00003 * 9 8 7 37 37 H 1.08999 * 109.46976 * 59.99838 * 9 8 7 38 38 H 1.09001 * 109.47041 * 300.00074 * 13 11 10 39 39 H 1.09004 * 109.46962 * 60.00426 * 13 11 10 40 40 H 1.08001 * 119.87408 * 0.02562 * 15 14 13 41 41 H 1.07994 * 119.74916 * 180.02562 * 16 15 14 42 42 H 1.08004 * 119.87886 * 179.97438 * 17 16 15 43 43 H 1.08000 * 120.12230 * 179.97438 * 18 17 16 44 44 H 0.97001 * 119.99922 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1918 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2256 0.0821 0.0005 6 6 3.5947 -1.1473 0.0005 7 6 2.2088 -1.1955 0.0005 8 6 1.4830 -2.5163 0.0002 9 6 1.1276 -2.9024 -1.4370 10 8 0.4288 -4.1752 -1.4374 11 6 0.0440 -4.6586 -2.6291 12 8 0.2835 -4.0391 -3.6383 13 6 -0.6869 -5.9742 -2.7080 14 6 -1.0026 -6.2879 -4.1479 15 6 -2.2283 -5.9511 -4.6756 16 6 -2.5211 -6.2379 -5.9997 17 6 -1.5855 -6.8665 -6.8071 18 6 -0.3540 -7.2132 -6.3005 19 6 -0.0433 -6.9209 -4.9594 20 6 1.2216 -7.2659 -4.4299 21 1 1.6574 -6.6707 -3.6412 22 6 1.9087 -8.3787 -4.9279 23 7 3.1929 -8.5048 -4.7123 24 14 0.9923 -9.6838 -5.9006 25 1 1.1277 -9.4051 -7.3529 26 1 1.5648 -11.0201 -5.5976 27 1 -0.4441 -9.6639 -5.5246 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8899 -0.5142 30 1 -0.3634 -0.8901 -0.5135 31 1 1.6676 2.1275 0.0004 32 1 5.3047 0.1283 0.0005 33 1 4.1737 -2.0590 0.0001 34 1 2.1240 -3.2833 0.4346 35 1 0.5700 -2.4292 0.5893 36 1 0.4866 -2.1353 -1.8714 37 1 2.0406 -2.9893 -2.0261 38 1 -0.0599 -6.7636 -2.2936 39 1 -1.6139 -5.9096 -2.1382 40 1 -2.9645 -5.4608 -4.0558 41 1 -3.4853 -5.9697 -6.4056 42 1 -1.8244 -7.0856 -7.8374 43 1 0.3731 -7.7032 -6.9311 44 1 3.6691 -9.2763 -5.0572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842399584.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:20 Heat of formation + Delta-G solvation = -49.296789 kcal Electronic energy + Delta-G solvation = -26242.755243 eV Core-core repulsion = 22510.094670 eV Total energy + Delta-G solvation = -3732.660573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.63188 -39.91269 -37.95634 -36.24744 -34.86150 -33.64411 -32.76152 -32.03195 -30.39614 -30.09608 -27.62670 -27.20650 -25.06376 -24.25350 -22.70622 -21.58165 -21.32169 -21.02547 -19.44953 -17.41252 -17.25042 -17.10258 -16.44950 -16.11045 -15.99087 -15.51919 -15.29922 -14.59496 -14.43820 -14.35016 -13.80822 -13.70093 -13.49584 -13.14420 -13.00902 -12.88055 -12.74504 -12.57298 -12.21911 -12.08454 -11.96124 -11.71061 -11.56082 -11.40860 -11.16779 -10.85933 -10.79344 -10.29682 -10.26081 -9.89832 -9.76071 -9.68600 -9.65714 -9.58999 -9.16850 -9.12385 -7.67181 -7.58069 -6.98486 -4.54221 0.89531 0.97878 2.42424 2.66483 2.89319 3.08955 3.11627 3.24358 3.29609 3.58981 3.95275 4.24380 4.43040 4.46576 4.51306 4.68083 4.72607 4.93329 4.97501 5.19405 5.24372 5.29603 5.32643 5.45707 5.49180 5.55645 5.62741 5.71608 5.74977 5.80460 5.91846 5.99239 6.03451 6.13935 6.15549 6.24556 6.49681 6.51251 6.66739 6.87190 6.91570 7.14856 7.38304 7.59932 7.69284 7.75888 7.84158 8.08060 8.28996 8.41146 8.61522 8.76350 10.03457 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016808 B = 0.002802 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.506280 B = 9990.255674 C =11029.564285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.131 4.131 3 C 0.097 3.903 4 N -0.485 5.485 5 C 0.092 3.908 6 C -0.160 4.160 7 C -0.039 4.039 8 C -0.082 4.082 9 C 0.072 3.928 10 O -0.367 6.367 11 C 0.461 3.539 12 O -0.491 6.491 13 C -0.044 4.044 14 C -0.181 4.181 15 C -0.064 4.064 16 C -0.243 4.243 17 C -0.076 4.076 18 C -0.232 4.232 19 C 0.110 3.890 20 C -0.445 4.445 21 H 0.088 0.912 22 C 0.085 3.915 23 N -0.806 5.806 24 Si 0.911 3.089 25 H -0.271 1.271 26 H -0.291 1.291 27 H -0.243 1.243 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.138 0.862 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.148 10.509 10.853 15.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.133 4.133 3 C -0.060 4.060 4 N -0.194 5.194 5 C -0.065 4.065 6 C -0.180 4.180 7 C -0.047 4.047 8 C -0.119 4.119 9 C -0.002 4.002 10 O -0.285 6.285 11 C 0.303 3.697 12 O -0.376 6.376 13 C -0.081 4.081 14 C -0.183 4.183 15 C -0.082 4.082 16 C -0.263 4.263 17 C -0.095 4.095 18 C -0.251 4.251 19 C 0.107 3.893 20 C -0.474 4.474 21 H 0.106 0.894 22 C -0.134 4.134 23 N -0.430 5.430 24 Si 0.737 3.263 25 H -0.197 1.197 26 H -0.219 1.219 27 H -0.166 1.166 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.172 0.828 32 H 0.174 0.826 33 H 0.156 0.844 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.130 0.870 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.118 0.882 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.322 11.419 10.563 15.728 hybrid contribution -0.371 -1.228 -0.664 1.444 sum -2.693 10.191 9.899 14.461 Atomic orbital electron populations 1.20833 0.90121 1.03664 1.02816 1.20857 0.97709 0.93604 1.01133 1.22657 0.89948 0.97337 0.96052 1.67661 1.08335 1.31528 1.11835 1.22746 1.00423 0.87577 0.95715 1.22152 0.94492 1.00070 1.01291 1.19995 0.93714 0.94543 0.96475 1.20527 1.01379 0.93449 0.96589 1.22787 0.97135 0.83958 0.96364 1.86491 1.69227 1.37237 1.35556 1.24353 0.76842 0.88025 0.80485 1.90658 1.51649 1.59123 1.36173 1.20001 0.99606 0.91180 0.97336 1.19060 0.94929 1.11349 0.92944 1.20457 0.95491 0.97397 0.94885 1.20341 0.99577 1.11362 0.94970 1.20630 0.93897 0.97387 0.97566 1.21013 0.97714 1.10497 0.95920 1.17484 0.91750 0.89472 0.90554 1.19424 0.99303 1.10194 1.18447 0.89408 1.26170 0.94240 0.99372 0.93629 1.69700 1.08339 1.28198 1.36719 0.86321 0.82119 0.78106 0.79727 1.19692 1.21851 1.16576 0.90614 0.90942 0.90787 0.82822 0.82646 0.84382 0.89164 0.89221 0.91409 0.91132 0.87020 0.89057 0.88880 0.88839 0.88858 0.88194 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.30 36.00 0.33 -0.58 16 2 C -0.13 -1.31 5.90 -104.49 -0.62 -1.92 16 3 C 0.10 1.00 10.86 -17.55 -0.19 0.81 16 4 N -0.49 -5.70 10.36 -13.25 -0.14 -5.83 16 5 C 0.09 0.95 11.18 -17.55 -0.20 0.76 16 6 C -0.16 -1.64 9.80 -39.44 -0.39 -2.02 16 7 C -0.04 -0.42 5.17 -104.31 -0.54 -0.95 16 8 C -0.08 -0.87 5.07 -27.88 -0.14 -1.01 16 9 C 0.07 1.01 5.29 37.16 0.20 1.21 16 10 O -0.37 -6.08 10.22 -39.27 -0.40 -6.48 16 11 C 0.46 9.11 7.55 36.01 0.27 9.38 16 12 O -0.49 -11.46 15.78 -18.75 -0.30 -11.76 16 13 C -0.04 -0.83 5.30 -29.03 -0.15 -0.99 16 14 C -0.18 -4.08 4.43 -103.91 -0.46 -4.54 16 15 C -0.06 -1.34 9.66 -39.66 -0.38 -1.72 16 16 C -0.24 -5.09 10.05 -39.29 -0.39 -5.49 16 17 C -0.08 -1.69 10.02 -39.66 -0.40 -2.08 16 18 C -0.23 -5.68 7.17 -38.87 -0.28 -5.96 16 19 C 0.11 2.78 5.10 -106.83 -0.54 2.24 16 20 C -0.45 -11.80 8.55 -37.74 -0.32 -12.12 16 21 H 0.09 2.45 6.99 -52.49 -0.37 2.08 16 22 C 0.09 2.20 5.41 -17.34 -0.09 2.10 16 23 N -0.81 -21.20 13.93 55.55 0.77 -20.42 16 24 Si 0.91 20.51 24.52 -169.99 -4.17 16.34 16 25 H -0.27 -6.00 6.71 56.52 0.38 -5.62 16 26 H -0.29 -6.30 7.11 56.52 0.40 -5.89 16 27 H -0.24 -5.54 6.85 56.52 0.39 -5.16 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.48 8.10 -51.92 -0.42 0.06 16 30 H 0.07 0.64 5.63 -51.93 -0.29 0.34 16 31 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 32 H 0.16 1.22 8.06 -52.48 -0.42 0.79 16 33 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 34 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 35 H 0.09 0.83 7.10 -51.93 -0.37 0.46 16 36 H 0.07 0.94 6.97 -51.93 -0.36 0.58 16 37 H 0.07 1.10 8.13 -51.93 -0.42 0.67 16 38 H 0.11 2.13 7.15 -51.93 -0.37 1.75 16 39 H 0.09 1.40 8.05 -51.93 -0.42 0.98 16 40 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 41 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 42 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 43 H 0.10 2.44 4.74 -52.49 -0.25 2.19 16 44 H 0.29 6.80 8.30 -40.82 -0.34 6.46 16 LS Contribution 367.02 15.07 5.53 5.53 Total: -1.00 -31.06 367.02 -8.82 -39.88 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.82 Total: 5.65 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: -4.30 Total: -22.91 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: 0.64 Total: -26.26 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.70 Total: -18.23 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.17 Total: 16.34 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.06 -8.82 -39.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842399584.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.422 kcal (2) G-P(sol) polarization free energy of solvation -31.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds