Wall clock time and date at job start Tue Mar 31 2020 14:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38216 * 120.42456 * 2 1 4 4 N 1.31853 * 120.76973 * 179.97438 * 3 2 1 5 5 C 1.31886 * 121.72090 * 0.02562 * 4 3 2 6 6 C 1.38181 * 120.76813 * 359.97438 * 5 4 3 7 7 C 1.38632 * 120.41630 * 179.97438 * 2 1 3 8 8 C 1.50706 * 120.79032 * 0.04249 * 7 2 1 9 9 C 1.53000 * 109.46809 * 84.97901 * 8 7 2 10 10 O 1.45196 * 109.46843 * 179.97438 * 9 8 7 11 11 C 1.34233 * 116.99837 * 179.97438 * 10 9 8 12 12 O 1.20821 * 120.00273 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.99869 * 180.02562 * 11 10 9 14 14 C 1.50702 * 109.46932 * 180.02562 * 13 11 10 15 15 C 1.37636 * 120.12653 * 264.99725 * 14 13 11 16 16 C 1.38614 * 120.24864 * 179.97438 * 15 14 13 17 17 C 1.38652 * 120.50043 * 0.02562 * 16 15 14 18 18 C 1.37603 * 120.24826 * 0.02562 * 17 16 15 19 19 C 1.40698 * 120.12572 * 84.72749 * 14 13 11 20 20 C 1.41395 * 120.24612 * 359.97438 * 19 14 13 21 21 H 1.07995 * 119.99801 * 329.70031 * 20 19 14 22 22 C 1.39948 * 119.99873 * 149.70342 * 20 19 14 23 23 N 1.30824 * 119.99817 * 162.01085 * 22 20 19 24 24 Si 1.86799 * 119.99907 * 342.01717 * 22 20 19 25 25 H 1.48497 * 109.47429 * 95.40093 * 24 22 20 26 26 H 1.48501 * 109.46938 * 215.40203 * 24 22 20 27 27 H 1.48498 * 109.46998 * 335.39739 * 24 22 20 28 28 H 1.08997 * 109.47516 * 270.02631 * 1 2 3 29 29 H 1.09011 * 109.46749 * 30.02202 * 1 2 3 30 30 H 1.08999 * 109.47502 * 150.01740 * 1 2 3 31 31 H 1.08001 * 119.61770 * 0.02562 * 3 2 1 32 32 H 1.08007 * 119.61735 * 179.97438 * 5 4 3 33 33 H 1.08003 * 120.41856 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.47130 * 204.98109 * 8 7 2 35 35 H 1.08999 * 109.46796 * 324.98348 * 8 7 2 36 36 H 1.08999 * 109.46975 * 300.00003 * 9 8 7 37 37 H 1.08999 * 109.46976 * 59.99838 * 9 8 7 38 38 H 1.09001 * 109.47041 * 300.00074 * 13 11 10 39 39 H 1.09004 * 109.46962 * 60.00426 * 13 11 10 40 40 H 1.08001 * 119.87408 * 0.02562 * 15 14 13 41 41 H 1.07994 * 119.74916 * 180.02562 * 16 15 14 42 42 H 1.08004 * 119.87886 * 179.97438 * 17 16 15 43 43 H 1.08000 * 120.12230 * 179.97438 * 18 17 16 44 44 H 0.97001 * 119.99922 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1918 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2256 0.0821 0.0005 6 6 3.5947 -1.1473 0.0005 7 6 2.2088 -1.1955 0.0005 8 6 1.4830 -2.5163 0.0002 9 6 1.1276 -2.9024 -1.4370 10 8 0.4288 -4.1752 -1.4374 11 6 0.0440 -4.6586 -2.6291 12 8 0.2835 -4.0391 -3.6383 13 6 -0.6869 -5.9742 -2.7080 14 6 -1.0026 -6.2879 -4.1479 15 6 -2.2283 -5.9511 -4.6756 16 6 -2.5211 -6.2379 -5.9997 17 6 -1.5855 -6.8665 -6.8071 18 6 -0.3540 -7.2132 -6.3005 19 6 -0.0433 -6.9209 -4.9594 20 6 1.2216 -7.2659 -4.4299 21 1 1.6574 -6.6707 -3.6412 22 6 1.9087 -8.3787 -4.9279 23 7 3.1929 -8.5048 -4.7123 24 14 0.9923 -9.6838 -5.9006 25 1 1.1277 -9.4051 -7.3529 26 1 1.5648 -11.0201 -5.5976 27 1 -0.4441 -9.6639 -5.5246 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8899 -0.5142 30 1 -0.3634 -0.8901 -0.5135 31 1 1.6676 2.1275 0.0004 32 1 5.3047 0.1283 0.0005 33 1 4.1737 -2.0590 0.0001 34 1 2.1240 -3.2833 0.4346 35 1 0.5700 -2.4292 0.5893 36 1 0.4866 -2.1353 -1.8714 37 1 2.0406 -2.9893 -2.0261 38 1 -0.0599 -6.7636 -2.2936 39 1 -1.6139 -5.9096 -2.1382 40 1 -2.9645 -5.4608 -4.0558 41 1 -3.4853 -5.9697 -6.4056 42 1 -1.8244 -7.0856 -7.8374 43 1 0.3731 -7.7032 -6.9311 44 1 3.6691 -9.2763 -5.0572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842399584.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:19 Heat of formation + Delta-G solvation = -65.284994 kcal Electronic energy + Delta-G solvation = -26243.448543 eV Core-core repulsion = 22510.094670 eV Total energy + Delta-G solvation = -3733.353873 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.63275 -41.22904 -39.64476 -37.67430 -35.83382 -35.51354 -33.72263 -33.47152 -32.19876 -31.10862 -28.95359 -28.18437 -26.82932 -25.35298 -23.52429 -23.26907 -22.63815 -22.16923 -21.09134 -19.28063 -18.69423 -18.06269 -17.70241 -17.35244 -17.26340 -17.06651 -16.24867 -16.04104 -15.95152 -15.50237 -15.32427 -14.99189 -14.60291 -14.36859 -14.29862 -13.99574 -13.81356 -13.68614 -13.62554 -13.42533 -13.20863 -13.00586 -12.81480 -12.74048 -12.70469 -12.53407 -12.32314 -12.00946 -11.56516 -11.54947 -11.47577 -11.40489 -10.98692 -10.54379 -10.46248 -9.87134 -9.42587 -9.35790 -8.88799 -6.48916 0.12538 0.15587 0.71946 0.88570 1.27377 1.32351 1.39572 1.49615 1.81942 2.13027 2.62898 2.77669 3.45797 3.54176 3.65417 3.67340 3.86944 3.93233 3.97030 4.02003 4.07698 4.18472 4.24769 4.35600 4.45015 4.50679 4.53866 4.61970 4.71139 4.73055 4.77019 4.81330 4.89576 4.91400 4.94357 5.05397 5.14104 5.21818 5.34519 5.36824 5.42374 5.65668 5.75160 5.84134 5.92264 6.02500 6.25788 6.42936 6.75690 6.86850 6.88469 6.97500 8.19021 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016808 B = 0.002802 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.506280 B = 9990.255674 C =11029.564285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.133 4.133 3 C 0.087 3.913 4 N -0.508 5.508 5 C 0.080 3.920 6 C -0.168 4.168 7 C -0.054 4.054 8 C -0.069 4.069 9 C 0.071 3.929 10 O -0.358 6.358 11 C 0.466 3.534 12 O -0.534 6.534 13 C -0.046 4.046 14 C -0.186 4.186 15 C -0.072 4.072 16 C -0.230 4.230 17 C -0.087 4.087 18 C -0.256 4.256 19 C 0.085 3.915 20 C -0.473 4.473 21 H 0.056 0.944 22 C 0.049 3.951 23 N -0.850 5.850 24 Si 0.964 3.036 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.248 1.248 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.177 0.823 32 H 0.175 0.825 33 H 0.149 0.851 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.105 0.895 39 H 0.137 0.863 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.092 0.908 44 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.083 11.103 11.263 16.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.135 4.135 3 C -0.070 4.070 4 N -0.217 5.217 5 C -0.076 4.076 6 C -0.188 4.188 7 C -0.062 4.062 8 C -0.106 4.106 9 C -0.003 4.003 10 O -0.275 6.275 11 C 0.310 3.690 12 O -0.423 6.423 13 C -0.083 4.083 14 C -0.187 4.187 15 C -0.089 4.089 16 C -0.249 4.249 17 C -0.105 4.105 18 C -0.275 4.275 19 C 0.082 3.918 20 C -0.503 4.503 21 H 0.074 0.926 22 C -0.166 4.166 23 N -0.476 5.476 24 Si 0.788 3.212 25 H -0.193 1.193 26 H -0.205 1.205 27 H -0.171 1.171 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.194 0.806 32 H 0.192 0.808 33 H 0.167 0.833 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.123 0.877 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.141 0.859 43 H 0.109 0.891 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.260 12.013 11.000 17.117 hybrid contribution 0.384 -1.222 -0.766 1.493 sum -4.876 10.790 10.234 15.651 Atomic orbital electron populations 1.20882 0.88509 1.03907 1.03976 1.21119 0.98924 0.93220 1.00211 1.23076 0.89753 0.98465 0.95712 1.67685 1.09245 1.32228 1.12564 1.23101 1.01483 0.87398 0.95603 1.22366 0.94739 1.00616 1.01029 1.20103 0.94016 0.94740 0.97375 1.20450 1.02360 0.93647 0.94166 1.22987 0.95935 0.82745 0.98682 1.86468 1.68875 1.38359 1.33802 1.24433 0.76089 0.87904 0.80570 1.90639 1.53500 1.60493 1.37649 1.20084 1.01522 0.90504 0.96157 1.19488 0.95077 1.09816 0.94353 1.20943 0.95519 0.96842 0.95639 1.20902 1.00549 1.08642 0.94792 1.21022 0.93132 0.97004 0.99324 1.21157 0.98994 1.11627 0.95761 1.17728 0.91918 0.90639 0.91470 1.19347 1.00784 1.11162 1.19009 0.92633 1.26803 0.94731 1.00645 0.94420 1.69736 1.09388 1.29452 1.39036 0.85507 0.80616 0.76475 0.78618 1.19317 1.20481 1.17092 0.88898 0.89645 0.91560 0.80643 0.80780 0.83307 0.88634 0.87367 0.91124 0.93305 0.87651 0.84556 0.85014 0.85123 0.85928 0.89051 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 9.30 71.24 0.66 -0.91 16 2 C -0.13 -2.48 5.90 -19.78 -0.12 -2.59 16 3 C 0.09 1.68 10.86 84.68 0.92 2.60 16 4 N -0.51 -11.65 10.36 -195.85 -2.03 -13.68 16 5 C 0.08 1.64 11.18 84.67 0.95 2.58 16 6 C -0.17 -3.38 9.80 22.36 0.22 -3.16 16 7 C -0.05 -1.11 5.17 -19.67 -0.10 -1.21 16 8 C -0.07 -1.39 5.07 29.85 0.15 -1.24 16 9 C 0.07 1.98 5.29 71.98 0.38 2.36 16 10 O -0.36 -11.69 10.22 -51.45 -0.53 -12.21 16 11 C 0.47 18.37 7.55 71.24 0.54 18.91 16 12 O -0.53 -25.33 15.78 21.98 0.35 -24.98 16 13 C -0.05 -1.69 5.30 29.10 0.15 -1.53 16 14 C -0.19 -8.14 4.43 -19.40 -0.09 -8.22 16 15 C -0.07 -2.74 9.66 22.22 0.21 -2.52 16 16 C -0.23 -8.68 10.05 22.46 0.23 -8.46 16 17 C -0.09 -3.59 10.02 22.22 0.22 -3.37 16 18 C -0.26 -12.41 7.17 22.73 0.16 -12.25 16 19 C 0.08 4.32 5.10 -21.29 -0.11 4.21 16 20 C -0.47 -26.23 8.55 23.46 0.20 -26.03 16 21 H 0.06 3.31 6.99 -2.91 -0.02 3.29 16 22 C 0.05 2.60 5.41 85.26 0.46 3.06 16 23 N -0.85 -46.78 13.93 21.83 0.30 -46.48 16 24 Si 0.96 43.00 24.52 68.60 1.68 44.68 16 25 H -0.27 -11.60 6.71 99.48 0.67 -10.93 16 26 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 27 H -0.25 -11.07 6.85 99.48 0.68 -10.39 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 0.94 8.10 -2.38 -0.02 0.92 16 30 H 0.07 1.01 5.63 -2.39 -0.01 1.00 16 31 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 32 H 0.18 2.65 8.06 -2.91 -0.02 2.63 16 33 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 34 H 0.10 1.82 8.07 -2.39 -0.02 1.80 16 35 H 0.11 1.78 7.10 -2.39 -0.02 1.76 16 36 H 0.07 1.95 6.97 -2.39 -0.02 1.93 16 37 H 0.05 1.58 8.13 -2.39 -0.02 1.56 16 38 H 0.11 4.06 7.15 -2.39 -0.02 4.04 16 39 H 0.14 3.71 8.05 -2.39 -0.02 3.69 16 40 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 41 H 0.13 3.98 8.06 -2.91 -0.02 3.95 16 42 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 43 H 0.09 4.48 4.74 -2.91 -0.01 4.47 16 44 H 0.29 14.50 8.30 -92.71 -0.77 13.73 16 Total: -1.00 -69.60 367.02 5.78 -63.82 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 0.95 Total: 26.62 kcal Atomic # 6 Polarization: -42.81 SS G_CDS: 5.05 Total: -37.77 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -1.73 Total: -60.16 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -0.18 Total: -37.20 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.68 Total: 44.68 kcal Total: -69.60 5.78 -63.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842399584.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.463 kcal (2) G-P(sol) polarization free energy of solvation -69.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds